BAC Information

Click to search

BAC

Clone NameB6Ng01-108A24
Chromosome13 (Build37)
Map Location 81,238,129 - 81,405,927
singlet/doubletdoublet
Overlap geneGpr98
Upstream geneLOC382780, EG666933, Arrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A24.bB6Ng01-108A24.g
ACCDH915346DH915347
length545660
definitionDH915346|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A24, 5' end.DH915347|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,238,129 - 81,238,679)(81,405,269 - 81,405,927)
sequence
ccatcttcttgcagtagatgggaatgaacagataactacacttggacaat
gtgcaaagcatggaagagtctgaagcactcagccctaagtgggttgtctt
tatcaagcccttcccttcaaagctcaggaagttatgtgaacaagaaagta
gaaaggctgcaagacctggtgatgttagatgactccaaggaaactgcatt
gttcagacacaacagggctaatgtacatgaacttccagagagactgtgac
agtttgcactggacccaacaagttcaaaccaaacaaaatctcagcacaga
aaaggggaagtggccatagagtgctattcctatctaagaactattctcaa
ttttctgggaaaaaggaaaatcatgttttcctggggtgtgtcactgggca
cattagccacactccaggctagacccacgtccaggaggagttgagcaaca
caaaatggactctgtgttttttatgtgtttgttttgcattttttaaattt
gatttttaaaaatgtttgtttttcagatgggggaagaggggaagg
gaattctccttttcaatagagctacagtctcagcttaagagcagacatta
gttcttatttgtattaaagtattgcaaacctgaatcttcatgtcatagca
tgctaccttgaagtctcttggtaggaactatggatgtgtgaaatgcatgg
tagttatcttctgaatggtgatggcttgacagttatgatctgctttcttg
tgaggagatttttgtaattaaacctctaaggctttaatatgtaaacgctc
ctagttttctagtagcttgtcaagttgaaggtcatgttgatttcataaga
taccaaaggtctagtgtcatatcttcattagaatgttggaagacagcatg
tgtgaaaccgtccactcctaagattattctttgcagggttgcttttaatt
agcattgtgttttctttaaagtatctcactattcatagcctctttccagc
tttaagaatgtggtaagttgccatctctatgaaattttccatctcattta
gccaagcacatgttaatgtttataagctccagtgatctctccttttccat
tctttttattaatacttttattcccacctctgtctctctgtgtctctctc
tctgtgtctctgtctctctatctctctctgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81238129_81238679
seq2: B6Ng01-108A24.b_45_595

seq1  GAATTCCCATCTTCTTGCAGTAGATGGGAATGAACAGATAACTACACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCTTCTTGCAGTAGATGGGAATGAACAGATAACTACACTTG  50

seq1  GACAATGTGCAAAGCATGGAAGAGTCTGAAGCACTCAGCCCTAAGTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTGCAAAGCATGGAAGAGTCTGAAGCACTCAGCCCTAAGTGGGT  100

seq1  TGTCTTTATCAAGCCCTTCCCTTCAAAGCTCAGGAAGTTATGTGAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATCAAGCCCTTCCCTTCAAAGCTCAGGAAGTTATGTGAACAAG  150

seq1  AAAGTAGAAAGGCTGCAAGACCTGGTGATGTTAGATGACTCCAAGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAAAGGCTGCAAGACCTGGTGATGTTAGATGACTCCAAGGAAAC  200

seq1  TGCATTGTTCAGACACAACAGGGCTAATGTACATGAACTTCCAGAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTTCAGACACAACAGGGCTAATGTACATGAACTTCCAGAGAGAC  250

seq1  TGTGACAGTTTGCACTGGACCCAACAAGTTCAAACCAAACAAAATCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGTTTGCACTGGACCCAACAAGTTCAAACCAAACAAAATCTCAG  300

seq1  CACAGAAAAGGGGAAGTGGCCATAGAGTGCTATTCCTATCTAAGAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAAGGGGAAGTGGCCATAGAGTGCTATTCCTATCTAAGAACTAT  350

seq1  TCTCAATTTTCTGGGAAAAAGGAAAATCATGTTTTCCTGGGGTGTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTTTCTGGGAAAAAGGAAAATCATGTTTTCCTGGGGTGTGTCAC  400

seq1  TGGGCACATTAGCCACACTCCAGGCTAGACCCACGTCCAGGAGGAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACATTAGCCACACTCCAGGCTAGACCCACGTCCAGGAGGAGTTGA  450

seq1  GCAACACAAAATGGACTCTGTGTTTTTTATGTGTTTGTTTTGCATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACAAAATGGACTCTGTGTTTTTTATGTGTTTGTTTTGCATTTTTT  500

seq1  AAATTTGATTTTTAAAAATGTTTGTTTTTCAGATGGGGGAAGAGGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATTTTTAAAAATGTTTGTTTTTCAGATGGGGGAAGAGGGGAAG  550

seq1  G  551
      |
seq2  G  551

seq1: chr13_81405269_81405927
seq2: B6Ng01-108A24.g_67_725 (reverse)

seq1  ACACACACACACACACACACACACACACACAGAGAGAGATAGAGAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAGAGAGAGATAGAGAGACAG  50

seq1  AGACACAGAGAGAGAGACACAGAGAGACAGAGGTGGGAATAAAAGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGAGAGAGAGACACAGAGAGACAGAGGTGGGAATAAAAGTATTA  100

seq1  ATAAAAAGAATGGAAAAGGAGAGATCACTGGAGCTTATAAACATTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAATGGAAAAGGAGAGATCACTGGAGCTTATAAACATTAACAT  150

seq1  GTGCTTGGCTAAATGAGATGGAAAATTTCATAGAGATGGCAACTTACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGCTAAATGAGATGGAAAATTTCATAGAGATGGCAACTTACCAC  200

seq1  ATTCTTAAAGCTGGAAAGAGGCTATGAATAGTGAGATACTTTAAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAAGCTGGAAAGAGGCTATGAATAGTGAGATACTTTAAAGAAAA  250

seq1  CACAATGCTAATTAAAAGCAACCCTGCAAAGAATAATCTTAGGAGTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCTAATTAAAAGCAACCCTGCAAAGAATAATCTTAGGAGTGGAC  300

seq1  GGTTTCACACATGCTGTCTTCCAACATTCTAATGAAGATATGACACTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACACATGCTGTCTTCCAACATTCTAATGAAGATATGACACTAGA  350

seq1  CCTTTGGTATCTTATGAAATCAACATGACCTTCAACTTGACAAGCTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTATCTTATGAAATCAACATGACCTTCAACTTGACAAGCTACTA  400

seq1  GAAAACTAGGAGCGTTTACATATTAAAGCCTTAGAGGTTTAATTACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTAGGAGCGTTTACATATTAAAGCCTTAGAGGTTTAATTACAAAA  450

seq1  ATCTCCTCACAAGAAAGCAGATCATAACTGTCAAGCCATCACCATTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCACAAGAAAGCAGATCATAACTGTCAAGCCATCACCATTCAGA  500

seq1  AGATAACTACCATGCATTTCACACATCCATAGTTCCTACCAAGAGACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTACCATGCATTTCACACATCCATAGTTCCTACCAAGAGACTTC  550

seq1  AAGGTAGCATGCTATGACATGAAGATTCAGGTTTGCAATACTTTAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCATGCTATGACATGAAGATTCAGGTTTGCAATACTTTAATACA  600

seq1  AATAAGAACTAATGTCTGCTCTTAAGCTGAGACTGTAGCTCTATTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAACTAATGTCTGCTCTTAAGCTGAGACTGTAGCTCTATTGAAAA  650

seq1  GGAGAATTC  659
      |||||||||
seq2  GGAGAATTC  659