BAC Information

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BAC

Clone NameB6Ng01-109A07
Chromosome13 (Build37)
Map Location 25,865,031 - 26,000,562
singlet/doubletdoublet
Overlap genenone
Upstream geneBC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A07.bB6Ng01-109A07.g
ACCDH916047DH916048
length1,093983
definitionDH916047|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A07, 5' end.DH916048|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,865,031 - 25,866,137)(25,999,582 - 26,000,562)
sequence
gaattcttgggagctcgaggggtttgactaacaattgttaatgaggcttt
attaacccaggacagcaccttatggagtatttatataaaatagatgcatg
ccacagacttttgttttgttttgttttattaataccatgtcaggaaggca
tgtaaggccctgggggattaaaatggccaacttaatggtgggtatatctt
ttccttttagactagtatagtatatcactcctgattcaactcagattgaa
tcccaaatatctaaacacacatcatgatttcaatgccagatctgctttgt
caagcagatgatgacaagagcctactaattttatctcttcccaccccctt
tctctctcctctccatactttcccaggaagaatctttttctgttggggga
aaaaaacccctatttttaaaaatttacttttttgtacatcataggtgtgt
gtgtgtgtgcacgtgtgtgcacatgtgtgcatgtgcccgcctgtagtgga
tgtcaacggacagcctttataatttcgttaacttaaattctgcatctaca
ttatagttattttgttcatgataaatgaaaccagtagctttgggatgaaa
acaagattcctattggaaggtatacattgaagtgtaacaaatcacaggaa
gacaaatccagctgagaagaaggaaacactgtaggacacagcactatgcg
tgatgagtagtctccctcaaggttgggattgttgcaagaaagaggtgatg
tatctcaggaaatgcaggatgctgggtgaggactttagtgtctacagggg
actggctgtagtctgcctgaggcatgcaggaagacttatcgaacttattt
ctgaatcacacataatgagaaatgtatgtgatatgtaaataattgttaca
ttgcattgtttgtaaataatgacagaaaaaacaacaaacaaacaaaaacc
caaaacctttgcacttcagtttagacatagtggttttctagtagatatat
tatggcttgtaaggttgtagatgggaggaaactatgcacttgaaggcaaa
aaatgccttgtcactaataaaatggtcaagcaagaaacctact
gaattcactcatttttagcaacctttagttgattctttatgattctccac
atatgtatgcaaatgagggcaatattacttcatgcattatgatttgattg
gtgtctgtttctttctcttccctatgggttcttgtatgttacagtaccaa
aatgtggagagtaggttccacttctcagcttcgatctccaacatttcttg
tctcttccatgaataatagcaatgatgttttctctgtgattttcattaat
gctcttggacaggtggaagaaacctctgtttataatgctttatcaagaat
ttccaaaaataaaaaataaaatagaagaatttccaaatgctgaaacacgt
tggactttctcagaggctttggctgcatctactgagatgagagtctggtt
ctgccctcccaaacctttgtgactggctaagggtcattgaaccttgactt
ctgtcagaatcttatttagttttaagaaagcactgagaagcattaaatgg
cttagtctcaaaggccattcataggtcattctgatgcaaattgaatctga
cagtgaggttgaagaccaatatttgatgggtatgggcgtctgtaaaatac
aattatcccttgccccaaattaattcaaacctttatcaatgctcatttct
gaatattggatgacgtaatctttttgaagcagttaagagaaatttgacat
catacagactacatatcttaatgtgtgtcctattgttcttctttcaatgt
tgtcaagagggtaacacagccttatttacccttgagaatgattgacattt
ggaatatcatgccaagtcactgggtaaagatagatggaaaccttgtttag
ctatatttattttcctctttcccctcatacctctacccattacataccca
attttatgtgtctataactctgcatgacattgaaaagatttctgtttctg
aaaacaagtaataatgaacagcactggcatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25865031_25866137
seq2: B6Ng01-109A07.b_48_1140

seq1  GAATTCTTGGGAGCTCGAGGGGTTTGACTAACAATTGTTAATGAGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGAGCTCGAGGGGTTTGACTAACAATTGTTAATGAGGCTTT  50

seq1  ATTAACCCAGGACAGCACCTTATGGAGTATTTATATAAAATAGATGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCCAGGACAGCACCTTATGGAGTATTTATATAAAATAGATGCATG  100

seq1  CCACAGACTTTTGTTTTGTTTTGTTTTATTAATACCATGTCAGGAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACTTTTGTTTTGTTTTGTTTTATTAATACCATGTCAGGAAGGCA  150

seq1  TGTAAGGCCCTGGGGGATTAAAATGGCCAACTTAATGGTGGGTATATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCCCTGGGGGATTAAAATGGCCAACTTAATGGTGGGTATATCTT  200

seq1  TTCCTTTTAGACTAGTATAGTATATCACTCCTGATTCAACTCAGATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTAGACTAGTATAGTATATCACTCCTGATTCAACTCAGATTGAA  250

seq1  TCCCAAATATCTAAACACACATCATGATTTCAATGCCAGATCTGCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATATCTAAACACACATCATGATTTCAATGCCAGATCTGCTTTGT  300

seq1  CAAGCAGATGATGACAAGAGCCTACTAATTTTATCTCTTCCCACCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGATGATGACAAGAGCCTACTAATTTTATCTCTTCCCACCCCCTT  350

seq1  TCTCTCTCCTCTCCATACTTTCCCAGGAAGAATCTTTTTCTGTTGGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCTCTCCATACTTTCCCAGGAAGAATCTTTTTCTGTTGGGGGA  400

seq1  AAAAAACCCCTATTTTTAAAAATTTACTTTTTTGTACATCATAGGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCCTATTTTTAAAAATTTACTTTTTTGTACATCATAGGTGTGT  450

seq1  GTGTGTGTGCACGTGTGTGCACATGTGTGCATGTGCCCGCCTGTAGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCACGTGTGTGCACATGTGTGCATGTGCCCGCCTGTAGTGGA  500

seq1  TGTCAACGGACAGCCTTTATAATTTCGTTAACTTAAATTCTGCATCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACGGACAGCCTTTATAATTTCGTTAACTTAAATTCTGCATCTACA  550

seq1  TTATAGTTATTTTGTTCATGATAAATGAAACCAGTAGCTTTGGGATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTATTTTGTTCATGATAAATGAAACCAGTAGCTTTGGGATGAAA  600

seq1  ACAAGATTCCTATTGGAAGGTATACATTGAAGTGTAACAAATCACAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTCCTATTGGAAGGTATACATTGAAGTGTAACAAATCACAGGAA  650

seq1  GACAAATCCAGCTGAGAAGAAGGAAACACTGTAGGACACAGCACTATGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATCCAGCTGAGAAGAAGGAAACACTGTAGGACACAGCACTATGCG  700

seq1  TGATGAGTAGTCTCCCTCAAGGTTGGGATTGTTGCAAGAAAGAGGTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGTAGTCTCCCTCAAGGTTGGGATTGTTGCAAGAAAGAGGTGATG  750

seq1  TATCTCAGGAAATGCAGGATGCTGGGTGAGGACTTTAGTGTCTACAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGGAAATGCAGGATGCTGGGTGAGGACTTTAGTGTCTACAGGGG  800

seq1  ACTGGCTGTAGGTCTGCCTGAGGCATGCAGGAAGACTTATCGAACTTATT  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGTA-GTCTGCCTGAGGCATGCAGGAAGACTTATCGAACTTATT  849

seq1  TCTGAATCACACATAATGAGAAATGTATGTGATATGTAAATAATTGTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATCACACATAATGAGAAATGTATGTGATATGTAAATAATTGTTAC  899

seq1  ATTGCATTGTTTTGTAAATAATGACAGAAAAAAACAAACAAACAAACAAA  950
      ||||||||| |||||||||||||||||||||||   ||||||||||| ||
seq2  ATTGCATTG-TTTGTAAATAATGACAGAAAAAA--CAACAAACAAAC-AA  945

seq1  AAACCCAAAACCTTTGCACTTCCAGTTTAGACATAGTGGTTTTTCTAGTA  1000
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  AAACCCAAAACCTTTGCACTT-CAGTTTAGACATAGTGG-TTTTCTAGTA  993

seq1  GATATATTATGGCTTGTTAGGTTTGTAGATGGGAAGGAAACCTATGCACT  1050
      ||||||||||||||||| ||| ||||||||||| |||||| |||||||||
seq2  GATATATTATGGCTTGTAAGG-TTGTAGATGGG-AGGAAA-CTATGCACT  1040

seq1  GGAAGGCAGACAATGCCATGTCACTAAATAAAATGTTCAAAGCAAAGAAA  1100
       ||||||| | |||||| ||||||| ||||||||| || |||| ||||||
seq2  TGAAGGCAAAAAATGCCTTGTCACT-AATAAAATGGTC-AAGC-AAGAAA  1087

seq1  CCCTACT  1107
       ||||||
seq2  -CCTACT  1093

seq1: chr13_25999582_26000562
seq2: B6Ng01-109A07.g_70_1048 (reverse)

seq1  TGCCAGTGCTGTTCATTATTACTTGTTTGTCAGAAACAGAAATCTGTTTC  50
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  TGCCAGTGCTGTTCATTATTACTTGTTT-TCAGAAACAGAAATCT-TTTC  48

seq1  AATGTCATGCAGAGTTATAGACACATAAAATTGGGTATGTAATGGGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATGCAGAGTTATAGACACATAAAATTGGGTATGTAATGGGTAGA  98

seq1  GGTATGAGGGGAAAGAGGAAAATAAATATAGCTAAACAAGGTTTCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAGGGGAAAGAGGAAAATAAATATAGCTAAACAAGGTTTCCATCT  148

seq1  ATCTTTACCCAGTGACTTGGCATGATATTCCAATTGTCAATCATTCTCAA  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCTTTACCCAGTGACTTGGCATGATATTCCAAATGTCAATCATTCTCAA  198

seq1  GGGTAAATAAGGCTGTGTTACCCTCTTGACAACATTGAAAGAAGAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATAAGGCTGTGTTACCCTCTTGACAACATTGAAAGAAGAACAAT  248

seq1  AGGACACACATTAAGATATGTAGTCTGTATGATGTCAAATTTCTCTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACACATTAAGATATGTAGTCTGTATGATGTCAAATTTCTCTTAAC  298

seq1  TGCTTCAAAAAGATTACGTCATCCAATATTCAGAAATGAGCATTGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAAAAGATTACGTCATCCAATATTCAGAAATGAGCATTGATAAA  348

seq1  GGTTTGAATTAATTTGGGGCAAGGGATAATTGTATTTTACAGACGCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAATTAATTTGGGGCAAGGGATAATTGTATTTTACAGACGCCCAT  398

seq1  ACCCATCAAATATTGGTCTTCAACCTCACTGTCAGATTCAATTTGCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCAAATATTGGTCTTCAACCTCACTGTCAGATTCAATTTGCATCA  448

seq1  GAATGACCTATGAATGGCCTTTGAGACTAAGCCATTTAATGCTTCTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCTATGAATGGCCTTTGAGACTAAGCCATTTAATGCTTCTCAGT  498

seq1  GCTTTCTTAAAACTAAATAAGATTCTGACAGAAGTCAAGGTTCAATGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTAAAACTAAATAAGATTCTGACAGAAGTCAAGGTTCAATGACC  548

seq1  CTTAGCCAGTCACAAAGGTTTGGGAGGGCAGAACCAGACTCTCATCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCAGTCACAAAGGTTTGGGAGGGCAGAACCAGACTCTCATCTCAG  598

seq1  TAGATGCAGCCAAAGCCTCTGAGAAAGTCCAACGTGTTTCAGCATTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCAGCCAAAGCCTCTGAGAAAGTCCAACGTGTTTCAGCATTTGGA  648

seq1  AATTCTTCTATTTTATTTTTTATTTTTGGAAATTCTTGATAAAGCATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCTATTTTATTTTTTATTTTTGGAAATTCTTGATAAAGCATTAT  698

seq1  AAACAGAGGTTTCTTCCACCTGTCCAAGAGCATTAATGAAAATCACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGGTTTCTTCCACCTGTCCAAGAGCATTAATGAAAATCACAGAG  748

seq1  AAAACATCATTGCTATTATTCATGGAAGAGACAAGAAATGTTGGAGATCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCATTGCTATTATTCATGGAAGAGACAAGAAATGTTGGAGATCG  798

seq1  AAGCTGAGAAGTGGAACCTACTCTCCACATTTTGGTACTGTAACATACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGAAGTGGAACCTACTCTCCACATTTTGGTACTGTAACATACAA  848

seq1  GAACCCATAGGGAAGAGAAAGAAACAGACACCAATCAAATCATAATGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATAGGGAAGAGAAAGAAACAGACACCAATCAAATCATAATGCAT  898

seq1  GAAGTAATATTGCCCTCATTTGCATACATATGTGGAGAATCATAAAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATATTGCCCTCATTTGCATACATATGTGGAGAATCATAAAGAAT  948

seq1  CAACTAAAGGTTGCTAAAAATGAGTGAATTC  981
      |||||||||||||||||||||||||||||||
seq2  CAACTAAAGGTTGCTAAAAATGAGTGAATTC  979