BAC Information

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BAC

Clone NameB6Ng01-109D21
Chromosome13 (Build37)
Map Location 18,836,088 - 18,837,178
singlet/doubletsinglet
Overlap geneVps41
Upstream geneCdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109D21.bB6Ng01-109D21.g
ACCDH916201DH916202
length1,2131,070
definitionDH916201|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D21, 5' end.DH916202|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaagagctgagaagcacctaaagaaatg
ttcaacatccttagtaatcaggaaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaactcaggtcacagc
agatgttggcaaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaatctggtacaaccactcttcaaatcagtttggtggatcctca
gaaaattggacatagtactacctgaggacccagcaatacctctcctgggc
atatatccagaagatgctctaacatgtaataagaacacatgctcctctat
gttcatagcagccatatttataatagccagaagctagaaagaacccaaat
gtccctcaacagaggaatggatacagaacatgtagtatatttacacaatg
gagtactactcagtagtactaaaaacaatgactacgtgcaaatggatgga
actagaaaatgtcttcctgagtgaggtaactcagtcacaaaagaaaacac
atggcatgcactaactaattggtagatattagcccaaaagcttggaatac
ccaagatacaattcacagaccatatgaagctcaagaagaaggaagaccaa
agtgtggatccttcagttcttcttagaaggaacaaaataatcacagaagg
aaatacagggacaaactgtggtgcagagattgaaggaaaggccatccaga
gactggggatccatcccatatacagacaccaaacccagacactattgtgg
atgtcaagaagtgcttactgacaggagcctgatatagctgtctcctgaga
ggctctgctagattctgataaatacataggtggatactcacagccaaaca
ttgaactgagcacagggtcccaaatggaggaaataggcaaaggacccaag
gagctgaaggggtttgcagccccataggaggacaacatatgaccaaccag
tacccctagagctccagggactaaaccatcaccagagagagcacatgtga
gaactcatggctccagctgcatatgtagcgagatggactagtcggtcatc
atgagaagggagaggttcctgttcttttaggttcttatgcctaatgttag
ggaatatcagctagagcaaggatgggtgggtatatggaccagaaaagttg
tagtaatatgatg
gaattcctaatgagccccttccccttcttgtggttcctctttaatgtagc
ttcgtattttaagtgtctgaattgaaatttcatttttagcaattctattt
tgataaatcccttcaaaccttggctttctgtgaggttatttttttttttt
ttttttaaagattgtcctgcttgactgaaatgcctagtagtgcctgtgaa
ttcgagcatttcattataggctgcaatgaagcatgctcgcatgcagtgaa
atacagagggttctggactatttgagtaaagcttagagaaatgaaaagga
agaaaaatctcatgtcgtatttcaggtagtctgtaagtttcttctggctt
gtttaggatcagttcagaggaataaagagacagtgggatgcatgaactag
tgtgatatcataaaatgaatatgtagcccagcagtcactaagtgacagga
aaggattatttttgcattggaatataaacatttatgctcagggttatgtg
gaaccatttatagagatattctaaggctgatgatacaagtacatctgagg
gttttcatccctcaatatggcatggatttttccattcagaaacaatattt
tcttgtttttaagcattttcccctcccccattggcctgaaatgacgccca
gattttcacatttcccttaaattaggtagagtttcttaatcatttcctct
gactttgggtttgactgtagcactgttgagctttttactgctccattttt
aatttactgcctcagtccatcaggcattgtgtaccgagcacatccaaacc
attagttgtcagtagatgagggtcctcatgagtcattttgacagctggga
tgcactagcacgggaaaacagcctgggttctgtcattttcccagctggag
catgcctttctagggatgtgtatcttccagatatttcagattttttatgc
cctaagtgttttcactttgaagttttatactgcatgctaataccagccaa
tttatatgacattctcatttttctacagttttggacttggaccattatgt
caggttatttacttgatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18836088_18837178
seq2: B6Ng01-109D21.g_67_1136

seq1  GAATTCCTAATGAGCCCCTTCCCCTTCTTGTGGTTCCTCTTTAATGTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATGAGCCCCTTCCCCTTCTTGTGGTTCCTCTTTAATGTAGC  50

seq1  TTCGTATTTTAAGTGTCTGAATTGAAATTTCATTTTTAGCAATTCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTATTTTAAGTGTCTGAATTGAAATTTCATTTTTAGCAATTCTATTT  100

seq1  TGATAAATCCCTTCAAACCTTGGCTTTCTGTGAGGTTATTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATCCCTTCAAACCTTGGCTTTCTGTGAGGTTATTTTTTTTTTTT  150

seq1  TTTTTTAAAGATTGTCCTGCTTGACTGAAATGCCTAGTAGTGCCTGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGATTGTCCTGCTTGACTGAAATGCCTAGTAGTGCCTGTGAA  200

seq1  TTCGAGCATTTCATTATAGGCTGCAATGAAGCATGCTCGCATGCAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGCATTTCATTATAGGCTGCAATGAAGCATGCTCGCATGCAGTGAA  250

seq1  ATACAGAGGGTTCTGGACTATTTGAGTAAAGCTTAGAGAAATGAAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGGGTTCTGGACTATTTGAGTAAAGCTTAGAGAAATGAAAAGGA  300

seq1  AGAAAAATCTCATGTCGTATTTCAGGTAGTCTGTAAGTTTCTTCTGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCTCATGTCGTATTTCAGGTAGTCTGTAAGTTTCTTCTGGCTT  350

seq1  GTTTAGGATCAGTTCAGAGGAATAAAGAGACAGTGGGATGCATGAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGATCAGTTCAGAGGAATAAAGAGACAGTGGGATGCATGAACTAG  400

seq1  TGTGATATCATAAAATGAATATGTAGCCCAGCAGTCACTAAGTGACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATCATAAAATGAATATGTAGCCCAGCAGTCACTAAGTGACAGGA  450

seq1  AAGGATTATTTTTGCATTGGAATATAAACATTTATGCTCAGGGTTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTATTTTTGCATTGGAATATAAACATTTATGCTCAGGGTTATGTG  500

seq1  GAACCATTTATAGAGATATTCTAAGGCTGATGATACAAGTACATCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATTTATAGAGATATTCTAAGGCTGATGATACAAGTACATCTGAGG  550

seq1  GTTTTCATCCCTCAATATGGCATGGATTTTTCCATTCAGAAACAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATCCCTCAATATGGCATGGATTTTTCCATTCAGAAACAATATTT  600

seq1  TCTTGTTTTTAAGCATTTTCCCCTCCCCCATTGGCCTGAAATGACGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTTAAGCATTTTCCCCTCCCCCATTGGCCTGAAATGACGCCCA  650

seq1  GATTTTCACATTTCCCTTAAATTAGGTAGAGTTTCTTAATCATTTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCACATTTCCCTTAAATTAGGTAGAGTTTCTTAATCATTTCCTCT  700

seq1  GACTTTGGGTTTGACTGTAGCACTGTTGAGCTTTTTACTGCTCCATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGGTTTGACTGTAGCACTGTTGAGCTTTTTACTGCTCCATTTTT  750

seq1  AATTTACTGCCTCAGTCCATCAGGCATTGTGTACCGAGCACATCCAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTGCCTCAGTCCATCAGGCATTGTGTACCGAGCACATCCAAACC  800

seq1  ATTAGTTGTCAGTAGATGAGGGTCCTCATGAGTCATTTTGACAGCTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTGTCAGTAGATGAGGGTCCTCATGAGTCATTTTGACAGCTGGGA  850

seq1  TGCACTAGCACGGGAAAACAGGCCTGGTTCTGTCATTTTCCCCAGGCTGG  900
      ||||||||||||||||||||| |  |||||||||||||||||   |||||
seq2  TGCACTAGCACGGGAAAACAGCCTGGGTTCTGTCATTTTCCC--AGCTGG  898

seq1  AGCCATGCCTTTTCTAGGGAATGTGTATCTTCCAAGATATTTCAGA-TAT  949
      || |||||| ||||||||| ||||||||||||| |||||||||||| | |
seq2  AG-CATGCC-TTTCTAGGG-ATGTGTATCTTCC-AGATATTTCAGATTTT  944

seq1  TTATGCACTAAGTGTTTTCACTTTGAAAGGTTTCTATTAACTGCATGCTA  999
      |||||| ||||||||||||||||||||  |||| |||  |||||||||||
seq2  TTATGCCCTAAGTGTTTTCACTTTGAA--GTTT-TAT--ACTGCATGCTA  989

seq1  ATACACAGCATATTTATTAATTGACATCTCCATTTTTCTTACAGTTTTTG  1049
      |||| ||||  ||||||    ||||||   |||||||| |||||||||  
seq2  ATAC-CAGCCAATTTAT---ATGACATTCTCATTTTTC-TACAGTTTT--  1032

seq1  GCACTGGGAACACATTATGGCAAGGTTTATTTACTTGATGTC  1091
      | ||| |||   ||||||| ||  | ||||||||||||||||
seq2  GGACTTGGA--CCATTATGTCA--GGTTATTTACTTGATGTC  1070