BAC Information

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BAC

Clone NameB6Ng01-109I01
Chromosome13 (Build37)
Map Location 81,775,739 - 81,937,813
singlet/doubletdoublet
Overlap geneLysmd3, Polr3g, 2900024O10Rik, Cetn3
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
Downstream geneLOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109I01.bB6Ng01-109I01.g
ACCDH916393DH916394
length1,106990
definitionDH916393|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I01, 5' end.DH916394|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,936,705 - 81,937,813)(81,775,739 - 81,776,729)
sequence
gaattcttaaaatacaaatctttcctcttttccccaactagttttgaggg
agttactttgtttttattgccactgttgaaaattatcctactatcccttg
ggatttagattcataacaattatcgcccagcaagacagctagagaagaaa
tctcccataaattatcgtctgggccagttactgagatttaattgaacaca
taatcttcaaagaaaatgaaaaaggaaatatagatcttgcttaaaatatg
gttgcatctacctgtttggcagagactttaaatgcatgaactttgagaat
aatcaaaatgcgcattttacaataaaagattactcctcagtaggccaacc
ccaaacctttaccctgctgttaaatctgaggtgctttcaatggtagaaaa
catgatttggaaatatttttatcactcagcatttagttgatgtacactga
gtggtttttattctaaagagccatctatcagtaggctctcaccgctaggt
cacgggagttcacgttctacagtgcgcacgtttccttgcagtcaggtttg
catggacctttcggaagaccctggggataggccgtctatggtaatgccac
acagagaaaatggtcgctttttttagagaacacagtggtatgttggtcaa
atgttacaagcatattaaaatcagaaatgtcgaactccagggattctatt
aagtatccctgatttcttttattatggaataaagaaagtctattctaaaa
tattgttaattaagtataaaatgaaggtaacctgctgatcttcagttcta
taaaaggtcatattcctaaaaatcactgcatactgagaaatgtttgtgta
ttctcagcataaaatttataattttctaaagttctaataaaaagcaactt
agatttttatatatagttacctaataactaattaactttatattttgagt
gttcctcattggggcaactctcacaaatacatcagataaaacaaagccct
gactttacttttgaaactactttaacggacctccaaagtatttcactacc
tcctattggatgtttgtcttggctttgcttgcttgtttctttctataatt
aaagaa
gaattctgggattagccctgggaagatgtatggtacctaagcgaaggtaa
ccagctatgtgacagaatgtagattagagtgaatgggttattttaagtta
tgatctagtcagagaagagtgtagatatatggccaagttatttgtaaatg
tattttgagtctgagtcttatttctgggatcctgggtctggaaagcagaa
ccagacctaacttcttcacaacaatccacgtcaggaacaaaaaatacgta
ttgttgagccttcagtcattgcaacgtctcagaaagagtattgtttcaca
cagagctatggcatgctaccaccattcagtcaaacactgtcccaagctgg
ttttcaggtcaccatgctgtgttgacaagcagagtccctctgccagacag
tccctgcttgtctctttcctctgctgcaacaatactgttactacaatgta
tgtttattgaatagtcacttgctcagaaactttactgaatactaacagat
gggtcatgggcaaagtgcagtctctgtccccatagagtccacattgtgtc
agagaaaggacataaatccaaagcacaagaaggcctgtgctgtcaaagaa
atgtgaaataagatggctcagagttacagagaagactacatgttagcttg
gctctaatggtgctctcacacctgccttcttttggtgccctggttgctgc
tatcttttagaccagaggttctcaaccttattaaggccatggccctttaa
tgcagtttctcatgttcccaaccataaaattatttcattgttacttcata
actataattttgctactgttttgaatcctgatataaatatctgtgtttgc
tggtggtgttaggtgaccctatgaaaggtgactcagatggctcttgacgc
acaggctgagaaccacatggattacatacacccacctggggctcttggtt
cccttacctgtctctgcttgggagcactccggccacacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81936705_81937813
seq2: B6Ng01-109I01.b_46_1151 (reverse)

seq1  TTCTTTAAATTATAAAAACAAACAAGCAAGCAAAAGCAAGACAAACAATA  50
      |||||| ||||||| ||| |||||||||||||||  |||||||||| || 
seq2  TTCTTT-AATTATAGAAAGAAACAAGCAAGCAAAGCCAAGACAAAC-ATC  48

seq1  CAATTAGAGGTAGTTGAAATACTTTG--AGTCTGTTAAAGTAGTTTCAAA  98
      ||||  ||||||| ||||||||||||   ||| |||||||||||||| ||
seq2  CAATAGGAGGTAG-TGAAATACTTTGGAGGTCCGTTAAAGTAGTTTC-AA  96

seq1  AAGTAAAGTCAGGGCTTTGTTTTATCTGATGTATTTGTGAGAGTTGCCCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGTCAGGGCTTTGTTTTATCTGATGTATTTGTGAGAGTTGCCCC  146

seq1  AATGAGGAACACTCAAAATATTAAGTGTAATTAGTTATTAGGTAACTATA  198
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  AATGAGGAACACTCAAAATATAAAGT-TAATTAGTTATTAGGTAACTATA  195

seq1  TATAAAAATCTAAGTTGCTTTTTTATTAGAACTTTAG-AAATTATAAATT  247
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TATAAAAATCTAAGTTGC-TTTTTATTAGAACTTTAGAAAATTATAAATT  244

seq1  TTATGCTGAGAATACACAAACATTTCTCAGTATGCAGTGATTTTTAGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGAGAATACACAAACATTTCTCAGTATGCAGTGATTTTTAGGAA  294

seq1  TATGACCTTTTATAGAACTGAAGATCAGCAGGTTACCTTCATTTTATACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTTTTATAGAACTGAAGATCAGCAGGTTACCTTCATTTTATACT  344

seq1  TAATTAACAATATTTTAGAATAGACTTTCTTTATTCCATAATAAAAGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACAATATTTTAGAATAGACTTTCTTTATTCCATAATAAAAGAAA  394

seq1  TCAGGGATACTTAATAGAATCCCTGGAGTTCGACATTTCTGATTTTAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATACTTAATAGAATCCCTGGAGTTCGACATTTCTGATTTTAATA  444

seq1  TGCTTGTAACATTTGACCAACATACCACTGTGTTCTCTAAAAAAAGCGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTAACATTTGACCAACATACCACTGTGTTCTCTAAAAAAAGCGAC  494

seq1  CATTTTCTCTGTGTGGCATTACCATAGACGGCCTATCCCCAGGGTCTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCTGTGTGGCATTACCATAGACGGCCTATCCCCAGGGTCTTCC  544

seq1  GAAAGGTCCATGCAAACCTGACTGCAAGGAAACGTGCGCACTGTAGAACG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTCCATGCAAACCTGACTGCAAGGAAACGTGCGCACTGTAGAACG  594

seq1  TGAACTCCCGTGACCTAGCGGTGAGAGCCTACTGATAGATGGCTCTTTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCCGTGACCTAGCGGTGAGAGCCTACTGATAGATGGCTCTTTAG  644

seq1  AATAAAAACCACTCAGTGTACATCAACTAAATGCTGAGTGATAAAAATAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACCACTCAGTGTACATCAACTAAATGCTGAGTGATAAAAATAT  694

seq1  TTCCAAATCATGTTTTCTACCATTGAAAGCACCTCAGATTTAACAGCAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATCATGTTTTCTACCATTGAAAGCACCTCAGATTTAACAGCAGG  744

seq1  GTAAAGGTTTGGGGTTGGCCTACTGAGGAGTAATCTTTTATTGTAAAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTTTGGGGTTGGCCTACTGAGGAGTAATCTTTTATTGTAAAATG  794

seq1  CGCATTTTGATTATTCTCAAAGTTCATGCATTTAAAGTCTCTGCCAAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTTTGATTATTCTCAAAGTTCATGCATTTAAAGTCTCTGCCAAACA  844

seq1  GGTAGATGCAACCATATTTTAAGCAAGATCTATATTTCCTTTTTCATTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGCAACCATATTTTAAGCAAGATCTATATTTCCTTTTTCATTTT  894

seq1  CTTTGAAGATTATGTGTTCAATTAAATCTCAGTAACTGGCCCAGACGATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGATTATGTGTTCAATTAAATCTCAGTAACTGGCCCAGACGATA  944

seq1  ATTTATGGGAGATTTCTTCTCTAGCTGTCTTGCTGGGCGATAATTGTTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGGAGATTTCTTCTCTAGCTGTCTTGCTGGGCGATAATTGTTAT  994

seq1  GAATCTAAATCCCAAGGGATAGTAGGATAATTTTCAACAGTGGCAATAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAAATCCCAAGGGATAGTAGGATAATTTTCAACAGTGGCAATAAA  1044

seq1  AACAAAGTAACTCCCTCAAAACTAGTTGGGGAAAAGAGGAAAGATTTGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTAACTCCCTCAAAACTAGTTGGGGAAAAGAGGAAAGATTTGTA  1094

seq1  TTTTAAGAATTC  1109
      ||||||||||||
seq2  TTTTAAGAATTC  1106

seq1: chr13_81775739_81776729
seq2: B6Ng01-109I01.g_67_1056

seq1  GAATTCTGGGATTAGCCCTGGGAAGATGTATGGTACCTAAGCGAAGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGATTAGCCCTGGGAAGATGTATGGTACCTAAGCGAAGGTAA  50

seq1  CCAGCTATGTGACAGAATGTAGATTAGAGTGAATGGGTTATTTTAAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATGTGACAGAATGTAGATTAGAGTGAATGGGTTATTTTAAGTTA  100

seq1  TGATCTAGTCAGAGAAGAGTGTAGATATATGGCCAAGTTATTTGTAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGTCAGAGAAGAGTGTAGATATATGGCCAAGTTATTTGTAAATG  150

seq1  TATTTTGAGTCTGAGTCTTATTTCTGGGATCCTGGGTCTGGAAAGCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAGTCTGAGTCTTATTTCTGGGATCCTGGGTCTGGAAAGCAGAA  200

seq1  CCAGACCTAACTTCTTCACAACAATCCACGTCAGGAACAAAAAATACGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTAACTTCTTCACAACAATCCACGTCAGGAACAAAAAATACGTA  250

seq1  TTGTTGAGCCTTCAGTCATTGCAACGTCTCAGAAAGAGTATTGTTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGCCTTCAGTCATTGCAACGTCTCAGAAAGAGTATTGTTTCACA  300

seq1  CAGAGCTATGGCATGCTACCACCATTCAGTCAAACACTGTCCCAAGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTATGGCATGCTACCACCATTCAGTCAAACACTGTCCCAAGCTGG  350

seq1  TTTTCAGGTCACCATGCTGTGTTGACAAGCAGAGTCCCTCTGCCAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGTCACCATGCTGTGTTGACAAGCAGAGTCCCTCTGCCAGACAG  400

seq1  TCCCTGCTTGTCTCTTTCCTCTGCTGCAACAATACTGTTACTACAATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTTGTCTCTTTCCTCTGCTGCAACAATACTGTTACTACAATGTA  450

seq1  TGTTTATTGAATAGTCACTTGCTCAGAAACTTTACTGAATACTAACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTGAATAGTCACTTGCTCAGAAACTTTACTGAATACTAACAGAT  500

seq1  GGGTCATGGGCAAAGTGCAGTCTCTGTCCCCATAGAGTCCACATTGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATGGGCAAAGTGCAGTCTCTGTCCCCATAGAGTCCACATTGTGTC  550

seq1  AGAGAAAGGACATAAATCCAAAGCACAAGAAGGCCTGTGCTGTCAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGACATAAATCCAAAGCACAAGAAGGCCTGTGCTGTCAAAGAA  600

seq1  ATGTGAAATAAGATGGCTCAGAGTTACAGAGAAGACTACATGTTAGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAATAAGATGGCTCAGAGTTACAGAGAAGACTACATGTTAGCTTG  650

seq1  GCTCTAATGGTGCTCTCACACCTGCCTTCTTTTGGTGCCCTGGTTGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATGGTGCTCTCACACCTGCCTTCTTTTGGTGCCCTGGTTGCTGC  700

seq1  TATCTTTTAGACCAGAGGTTCTCAACCTTATTAAGGCCATGGCCCTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTAGACCAGAGGTTCTCAACCTTATTAAGGCCATGGCCCTTTAA  750

seq1  TGCAGTTTCTCATGTTCCCAACCATAAAATTATTTCATTGTTACTTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTCTCATGTTCCCAACCATAAAATTATTTCATTGTTACTTCATA  800

seq1  ACTATAATTTTGCTACTGTTTTGAATCCTGATATAAATATCTGTGTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTTTGCTACTGTTTTGAATCCTGATATAAATATCTGTGTTTGC  850

seq1  TGGTGGTGTTAGGTGACCCCTATGAAAGGTGACTCAGATGGCTCTTGACG  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGTGGTGTTAGGTGA-CCCTATGAAAGGTGACTCAGATGGCTCTTGACG  899

seq1  CACAGGCTGAGAACCACATGATTTACATACACCAACCTGGTGCTC-TGGT  949
      ||||||||||||||||||||  ||||||||||| |||||| |||| ||||
seq2  CACAGGCTGAGAACCACATGGATTACATACACCCACCTGGGGCTCTTGGT  949

seq1  TCTCCTTACCTGTCTCTGCTT-GGAGCACCCCGGCCAACACTA  991
      || |||||||||||||||||| ||||||| |||||| ||||||
seq2  TC-CCTTACCTGTCTCTGCTTGGGAGCACTCCGGCC-ACACTA  990