BAC Information

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BAC

Clone NameB6Ng01-110D03
Chromosome13 (Build37)
Map Location 17,105,506 - 17,228,837
singlet/doubletdoublet
Overlap gene5033411D12Rik
Upstream geneInhba, LOC625181, LOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110D03.bB6Ng01-110D03.g
ACCDH916889DH916890
length1,1521,027
definitionDH916889|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D03, 5' end.DH916890|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,105,506 - 17,106,662)(17,227,800 - 17,228,837)
sequence
gaattctcaactgaggaatcatgaatggccaagaagcaccttaaagaaat
attcaacatcattactaatcagggaaatgcagaataaaatgaccctgaga
ttccaccctcagattataatggctaagatttaaaaaacaaaaacaaaaaa
accctcaggcaacagcagatgctggcaaggatgtggagaaagagaaaggc
tccttcattgctccattgctgttgcatttgcaagctggtataaccacttt
ggaaaacaatctggtagttaaaaaattgtaaatagctcttcctgaagacc
caactataccactcctgggtatatacccaaaagacactcatatatatcat
ataaatcatatctgtcattcatatatatatacatatataatgtacattat
atatcatatataatatatcataccatatatgataatatataacaaggatg
catgtccgactatgttcatggcagccttatttataatagccagaagctgg
aaataacacagttatttaaatgactttgattccaataaaagccaaggttt
tatctgtgagataaacacatacaatattatgaacactcttaaaacaaatt
tatattattaatttaacctctttaaattgcaacacagacttcagatgaga
ggtcaatagtcatatcctgcatttggactgtaatcctaagccattgtctt
cagctccaaatgtcttaacaagagagagaatgaccaagaataatgtcctt
ccatttgccagcactccagcccatatgaagacatcactgagatacttcaa
aggcttgttttgtcatatagttacaactagtgcttgagtgatctcagccc
agcctggcctttgtataaatacattttcattttcctcatatagtctctgg
tcttaattttttctttcctcagtttaaatgttctgtttcacatatgttta
ttataaattgctttaaacttttgggggaagcagacagaaatgcataatta
tctatttgttcatttagcacagtttcaaatgtccattaggtgttaaacac
tagaagagcaaatgagatctatgtctgaggtgcaataacagtgccatcat
ggagcttggttcctcatttacaggcctcatcttcttttattcatggcaca
ag
gaattcatgtcataaataagatcgatctaggtaagtgtctctgaggtaac
catagtccttggctaggctgagtggctggtaggacaaagagacaatgact
tttaaggatatatccaaagaagaagacagatggccaatggattgttaaga
atccagatccagtgaggcagaaatagcctaggagtacagactggagaaag
ctggagataacatcaccgtctatttctcttctctgctatcccaagctcat
gcattgcatatttttattccctatgataaaggtaggtaaagaaactcttt
atctcatggctatttttcctgtctatatatctgtggtggctattcttggt
tgtcaacttgactacatctggaatgaactgcaattcagaaatggaaggca
tacttttgagagatttttttgcttggattgaagtaggtgaatctaattct
aatcctgatctttgaggtagaaagacacaggtctttgatcttgagatggg
agacacacctttaatctgggttatgccttctgtcagaagcctatataaac
acatagaaggaagcttttgctctttcctggtttgctcttgccttgttagc
gagtccatcccttcatttgcattagaatctatttctttgggattccatca
tctattcaataccacctgagacatctagatatgtggagtgagcaactttt
gtgtttttgaactttctattcataacctgcccctgttgatttaagtggac
cataacaggtaagtgattctaatatgtatgtatgcatatatatatatata
tatatatatatatatatattttagagagagagagagagagagagagaccg
agagagacagagacttagacagagacagagaggagagagagtgatattat
tccataatatcctcctcctgtggagctgtgattttgtggattttgtttat
actgttctgagtgtgcgggcattccgacccgttacccctttacggactag
agggatgtcgactgcgaatcttgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17105506_17106662
seq2: B6Ng01-110D03.b_53_1193

seq1  TGAGGAATCATGAATGGCCAAGAAGCACCTTAAAGAAATATTCAACATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATCATGAATGGCCAAGAAGCACCTTAAAGAAATATTCAACATCA  50

seq1  TTACTAATCAGGGAAATGCAGAATAAAATGACCCTGAGATTCCACCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATCAGGGAAATGCAGAATAAAATGACCCTGAGATTCCACCCTCA  100

seq1  GATTATAATGGCTAAGATTTAAAAAACAAAAACAAAAAAACCCTCAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAATGGCTAAGATTTAAAAAACAAAAACAAAAAAACCCTCAGGCA  150

seq1  ACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGAAAGGCTCCTTCATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGAAAGGCTCCTTCATTGC  200

seq1  TCCATTGCTGTTGCATTTGCAAGCTGGTATAACCACTTTGGAAAACAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCTGTTGCATTTGCAAGCTGGTATAACCACTTTGGAAAACAATC  250

seq1  TGGTAGTTAAAAAATTGTAAATAGCTCTTCCTGAAGACCCAACTATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTAAAAAATTGTAAATAGCTCTTCCTGAAGACCCAACTATACCA  300

seq1  CTCCTGGGTATATACCCAAAAGACACTCATATATATCATATAAATCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGTATATACCCAAAAGACACTCATATATATCATATAAATCATAT  350

seq1  CTGTCATTCATATATATATACATATATAATGTACATTATATATCATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTCATATATATATACATATATAATGTACATTATATATCATATAT  400

seq1  AATATATCATACCATATATGATAATATATAACAAGGATGCATGTCCGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCATACCATATATGATAATATATAACAAGGATGCATGTCCGACT  450

seq1  ATGTTCATGGCAGCCTTATTTATAATAGCCAGAAGCTGGAAATAACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGGCAGCCTTATTTATAATAGCCAGAAGCTGGAAATAACACAG  500

seq1  TTATTTAAATGACTTTGATTCCAATAAAAGCCAAGGTTTTATCTGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAATGACTTTGATTCCAATAAAAGCCAAGGTTTTATCTGTGAGA  550

seq1  TAAACACATACAATATTATGAACACTCTTAAAACAAATTTATATTATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACATACAATATTATGAACACTCTTAAAACAAATTTATATTATTAA  600

seq1  TTTAACCTCTTTAAATTGCAACACAGACTTCAGATGAGAGGTCAATAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTCTTTAAATTGCAACACAGACTTCAGATGAGAGGTCAATAGTC  650

seq1  ATATCCTGCATTTGGACTGTAATCCTAAGCCATTGTCTTCAGCTCCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGCATTTGGACTGTAATCCTAAGCCATTGTCTTCAGCTCCAAAT  700

seq1  GTCTTAACAAGAGAGAGAATGACCAAGAATAATGTCCTTCCATTTGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAACAAGAGAGAGAATGACCAAGAATAATGTCCTTCCATTTGCCAG  750

seq1  CACTCCAGCCCATATGAAGACATCACTGAGATACTTCAAAGGCTTGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGCCCATATGAAGACATCACTGAGATACTTCAAAGGCTTGTTTT  800

seq1  GTCATATAGTTACAACTAGTGCTTGAGTGATCTCAGCCCAGCCTGGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATAGTTACAACTAGTGCTTGAGTGATCTCAGCCCAGCCTGGCCTT  850

seq1  TGTATAAATACATTTTCATTTTCCTCATATAGTCTCTGGTCTTAATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATACATTTTCATTTTCCTCATATAGTCTCTGGTCTTAATTTTT  900

seq1  TCTTTCCTCAGTTTAAATGTTCTGTTTCACATATGTTTATTATAAATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCAGTTTAAATGTTCTGTTTCACATATGTTTATTATAAATTGC  950

seq1  TTTAAAACTTTTGGGGGAAGCAGACAAGAAATGCATAATTAATCTATTTG  1000
      ||| ||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TTT-AAACTTTTGGGGGAAGCAGAC-AGAAATGCATAATT-ATCTATTTG  997

seq1  TTCATTTAGCCAACAGTTTCCAAATGTCCATTAGGTGTTAAAACACTAAG  1050
      ||||||||||  ||||||| ||||||||||||||||||| ||||||||  
seq2  TTCATTTAGC--ACAGTTT-CAAATGTCCATTAGGTGTT-AAACACTA--  1041

seq1  GACAGAGGCAAATGAGATCCTATGTCCTGAAGTTGCAAATAACAAGTGCC  1100
      || ||| ||||||||||| |||||| ||| || ||| |||||| ||||||
seq2  GA-AGA-GCAAATGAGAT-CTATGT-CTG-AGGTGC-AATAAC-AGTGCC  1084

seq1  CAATCATGGAGC-TGTGTCCTCATCTACA-GCCTCATCTTCTATTATTCA  1148
        |||||||||| ||  ||||||| |||| |||||||||||| |||||||
seq2  --ATCATGGAGCTTGGTTCCTCATTTACAGGCCTCATCTTCTTTTATTCA  1132

seq1  TGGCACAAG  1157
      |||||||||
seq2  TGGCACAAG  1141

seq1: chr13_17227800_17228837
seq2: B6Ng01-110D03.g_66_1092 (reverse)

seq1  TTTTCAAGATTCGGCAGTCATACTCCACTCTTAGCTCTGCTCATGGTGGT  50
      |||||||||||| ||||||  ||  | ||| ||| || | | | || |||
seq2  TTTTCAAGATTC-GCAGTC-GACATCCCTC-TAG-TCCG-TAAAGG-GGT  44

seq1  AACGGGTCGGAACTGCCCGGCACACCACAGAACAGTATAAACAAAATCCA  100
      |||||||||||| ||||| ||||| | |||||||||||||||||||||||
seq2  AACGGGTCGGAA-TGCCC-GCACA-CTCAGAACAGTATAAACAAAATCCA  91

seq1  CAAAATTCACAGCTCCACAGATGGAGTGATATTATGGAATAAATATCACT  150
      ||||| ||||||||||||||  |||| ||||||||||||| |||||||||
seq2  CAAAA-TCACAGCTCCACAGGAGGAG-GATATTATGGAAT-AATATCACT  138

seq1  CTCTCTCCTCTCTGTCTCTGTCTATGTCTCTGTCTCTCTCGGTCTCTCTC  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCTCTCCTCTCTGTCTCTGTCTAAGTCTCTGTCTCTCTCGGTCTCTCTC  188

seq1  TCTCTCTCTCTCTCTCT-AAATATATATATATATATATATATATATATAT  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTAAAATATATATATATATATATATATATATATAT  238

seq1  ATATGCATACATACATATTAGAATCACTTACCTGTTATGGTCCACTTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATACATACATATTAGAATCACTTACCTGTTATGGTCCACTTAAA  288

seq1  TCAACAGGGGCAGGTTATGAATAGAAAGTTCAAAAACACAAAAGTTGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGGGCAGGTTATGAATAGAAAGTTCAAAAACACAAAAGTTGCTC  338

seq1  ACTCCACATATCTAGATGTCTCAGGTGGTATTGAATAGATGATGGAATCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACATATCTAGATGTCTCAGGTGGTATTGAATAGATGATGGAATCC  388

seq1  CAAAGAAATAGATTCTAATGCAAATGAAGGGATGGACTCGCTAACAAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATAGATTCTAATGCAAATGAAGGGATGGACTCGCTAACAAGGC  438

seq1  AAGAGCAAACCAGGAAAGAGCAAAAGCTTCCTTCTATGTGTTTATATAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAACCAGGAAAGAGCAAAAGCTTCCTTCTATGTGTTTATATAGG  488

seq1  CTTCTGACAGAAGGCATAACCCAGATTAAAGGTGTGTCTCCCATCTCAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACAGAAGGCATAACCCAGATTAAAGGTGTGTCTCCCATCTCAAG  538

seq1  ATCAAAGACCTGTGTCTTTCTACCTCAAAGATCAGGATTAGAATTAGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGACCTGTGTCTTTCTACCTCAAAGATCAGGATTAGAATTAGATT  588

seq1  CACCTACTTCAATCCAAGCAAAAAAATCTCTCAAAAGTATGCCTTCCATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACTTCAATCCAAGCAAAAAAATCTCTCAAAAGTATGCCTTCCATT  638

seq1  TCTGAATTGCAGTTCATTCCAGATGTAGTCAAGTTGACAACCAAGAATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTGCAGTTCATTCCAGATGTAGTCAAGTTGACAACCAAGAATAG  688

seq1  CCACCACAGATATATAGACAGGAAAAATAGCCATGAGATAAAGAGTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACAGATATATAGACAGGAAAAATAGCCATGAGATAAAGAGTTTCT  738

seq1  TTACCTACCTTTATCATAGGGAATAAAAATATGCAATGCATGAGCTTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTACCTTTATCATAGGGAATAAAAATATGCAATGCATGAGCTTGGG  788

seq1  ATAGCAGAGAAGAGAAATAGACGGTGATGTTATCTCCAGCTTTCTCCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGAGAAGAGAAATAGACGGTGATGTTATCTCCAGCTTTCTCCAGT  838

seq1  CTGTACTCCTAGGCTATTTCTGCCTCACTGGATCTGGATTCTTAACAATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCCTAGGCTATTTCTGCCTCACTGGATCTGGATTCTTAACAATC  888

seq1  CATTGGCCATCTGTCTTCTTCTTTGGATATATCCTTAAAAGTCATTGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCCATCTGTCTTCTTCTTTGGATATATCCTTAAAAGTCATTGTCT  938

seq1  CTTTGTCCTACCAGCCACTCAGCCTAGCCAAGGACTATGGTTACCTCAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCTACCAGCCACTCAGCCTAGCCAAGGACTATGGTTACCTCAGA  988

seq1  GACACTTACCTAGATCGATCTTATTTATGACATGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||
seq2  GACACTTACCTAGATCGATCTTATTTATGACATGAATTC  1027