BAC Information

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BAC

Clone NameB6Ng01-111O06
Chromosome13 (Build37)
Map Location 18,640,036 - 18,641,198
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O06.bB6Ng01-111O06.g
ACCDH918106DH918107
length1,1611,258
definitionDH918106|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O06, 5' end.DH918107|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagttcc
ctatctgatttaggattggtaaagctcctttcccaatctgttgttggcct
ttttgtcttattgacagtgtctttttccttacagaagctttgcaatttta
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaaatttcccccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcactgtctctggttttatgtggagttccttg
atccacttagatttgaccttagtacaaggagataagaatggatctatttg
cattcttctacatgataactgccagttgtgccagcaccatttgttgaaaa
tgcttttttccactggatggttttaggtcccttgtcaaagatcaagtgat
cataggtgtgtgggttcatttctgggtcttaatcgttggaatggagactt
gttgattgttggatttcctaagacctgaatgacatcagagccacaaaaca
tagtttctaacattggagggtagcctgtctagccagcacagtcaattgat
cttctctagaaagaactaaatttgtttctgaaaaggttgacaaatatgtt
ctgttttcctagaaacacagaaggtcactccaaattatactccaaagcag
gaacgtgcaggatgagaatatcacccctatatctgctgggcatactgcta
gccacacaatggagaaaatgaccatgactgggaaatagggttttctgtag
aaataaccatagtaaatgattttaaaaaaaaagagaagcagaattcttca
tagagaagaactttgagtctcaaatattgaacacctaaacaagcaaacaa
accaaaattgttaatgagagttcattcggggaaattagaagcccaatgga
gtgctgagtctgagccacagtgttcagctgtgcgcagatggtgcataact
taggcagcaagaggaactttattatgtgctccatttctggatctcaaaaa
agagaaaatgagatggtaggcagtatgaggtatttccaggtgccttaaga
ataagagtctt
gaattctatatcttattcgtgatatccacttatccatgttcataactgac
ctgttcatgacagcctagatgtccatgaactgataaatctatagttaaaa
tgtggcacatttatacactggaacactattcagcagataagaaaaatgaa
attatgaaattttcatgtaattgatgatgctgtaaaacaaacatccccag
tgagataaccttgaccaaaaagaaaatattgtatgttttctttttattat
atgtgagtattcacttcctagatctagatatgtgcattttatttaaaatc
accaaagtacttaggtagttagtaaggtactcttgcgtgcgcccaactcg
ccagcaagaacgacgctgaaacaggatccttctgcacacgtttattagga
gagcttgattgcagaggtgaagagaccccaagcccagaactggtgctgct
tatataagcctaggagaggcgtgtctcacaccccgattggttatgcatgg
ttatgcttaccacctcatttgcatgcctacatctgattggttaacttctc
tctcatcttattggtcaacttctctctcatctgattggttaacttgtctc
tcatctgattggttaacttgtatctcatctgattggttaattcttaaaac
ctcatcttggcaaaaaactttattgcctatgtatgtgtggtagccagcac
caccctgcaacggcacatgtgacttcccacaaggtacccgggaagaagaa
gagatcatccaaagaagaagaaatagaatatagtgttaacatggttaaaa
agggttatagagtatcaggattaaatggtgaagtatgagagggcagggta
aatggaagattacaagaaggaaaaattacactaaggctttttggaacatt
atatggaaatctcctagtgcagcagcttcctaaaatatatacataaatga
gcagaatttaaattgagttattatatatggagtaagacaaggcttcaact
agatatcttatgctatcaagaaaagtcattcagtacagtaatgcaataaa
ttttggatggagttgttgacacgggatggatacaaataaccataaagcat
ggatgcttcattagtttcctccacaaatatggcaggccggttgctgaaat
ccacttatggtctatataactgggaatgaatggaggccttacccaatatc
ttctgagtaacttggaagagactacatgatgtgatgtcgcttcacgaggt
ggtaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18640036_18641198
seq2: B6Ng01-111O06.b_80_1206

seq1  ATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATAT  50

seq1  ATTGGATATTAGTTCCCTATCTGATTTAGGATTGGTAAAGCTCCTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATATTAGTTCCCTATCTGATTTAGGATTGGTAAAGCTCCTTTCCC  100

seq1  AATCTGTTGTTGGCCTTTTTGTCTTATTGACAGTGTCTTTTTCCTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTGTTGGCCTTTTTGTCTTATTGACAGTGTCTTTTTCCTTACAG  150

seq1  AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTCGATCTTACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTCGATCTTACAGC  200

seq1  ACAAGCCATTGCTGTTCTATTCAGGAAATTTCCCCCCTGTGCCCATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCATTGCTGTTCTATTCAGGAAATTTCCCCCCTGTGCCCATATCT  250

seq1  TCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTT  300

seq1  TATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATA  350

seq1  AGAATGGATCTATTTGCATTCTTCTACATGATAACTGCCAGTTGTGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATCTATTTGCATTCTTCTACATGATAACTGCCAGTTGTGCCAG  400

seq1  CACCATTTGTTGAAAATGCTTTTTTCCACTGGATGGTTTTAGGTCCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTGTTGAAAATGCTTTTTTCCACTGGATGGTTTTAGGTCCCTTG  450

seq1  TCAAAGATCAAGTGATCATAGGTGTGTGGGTTCATTTCTGGGTCTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCAAGTGATCATAGGTGTGTGGGTTCATTTCTGGGTCTTAATC  500

seq1  GTTGGAATGGAGACTTGTTGATTGTTGGATTTCCTAAGACCTGAATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAATGGAGACTTGTTGATTGTTGGATTTCCTAAGACCTGAATGACA  550

seq1  TCAGAGCCACAAAACATAGTTTCTAACATTGGAGGGTAGCCTGTCTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCACAAAACATAGTTTCTAACATTGGAGGGTAGCCTGTCTAGCC  600

seq1  AGCACAGTCAATTGATCTTCTCTAGAAAGAACTAAATTTGTTTCTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTCAATTGATCTTCTCTAGAAAGAACTAAATTTGTTTCTGAAAA  650

seq1  GGTTGACAAATATGTTCTGTTTTCCTAGAAACACAGAAGGTCACTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACAAATATGTTCTGTTTTCCTAGAAACACAGAAGGTCACTCCAAA  700

seq1  TTATACTCCAAAGCAGGAACGTGCAGGATGAGAATATCACCCCTATATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCCAAAGCAGGAACGTGCAGGATGAGAATATCACCCCTATATCT  750

seq1  GCTGGGCATACTGCTAGCCACACAATGGAGAAAATGACCATGACTGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCATACTGCTAGCCACACAATGGAGAAAATGACCATGACTGGGAA  800

seq1  ATAGGGTTTTCTGTAGAAATAACCATAGTAAATGATTTTAAAAAAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAGGGTTTTCTGTAGAAATAACCATAGTAAATGATTTTAAAAAAAAAG-  849

seq1  AGAAGGCAGAATTCTTCATAGAGAAGGAACTTTGAGTCTCAAATATTGAA  900
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAA-GCAGAATTCTTCATAGAGAA-GAACTTTGAGTCTCAAATATTGAA  897

seq1  CAACCTAAACAAGCAAACAAAACCAAAATTGTTAATGAGAAGTTCATTTG  950
      | |||||||||||||||| |||||||||||||||||||| |||||| || 
seq2  C-ACCTAAACAAGCAAAC-AAACCAAAATTGTTAATGAG-AGTTCA-TTC  943

seq1  GGGGAAAATAGAAGCCCAATGGAGTTGCTGAGGTCTGAAGCCCACAGTGT  1000
      ||||||| |||||||||||||||| |||||| ||||||   |||||||||
seq2  GGGGAAATTAGAAGCCCAATGGAG-TGCTGA-GTCTGA--GCCACAGTGT  989

seq1  TCCAGCCTGTGCGCCAGAATGGTGCATAACTTAGGGCAGCAAAGAGGACA  1050
      | ||| ||||||| ||| ||||||||||||||| |||||| ||||||| |
seq2  T-CAG-CTGTGCG-CAG-ATGGTGCATAACTTA-GGCAGC-AAGAGGA-A  1032

seq1  CTTTAATTTATGTGCTCAATTTTTCTGAGATCTCAAAAAAAGAGAAAAAA  1100
      |||||  |||||||||| |  |||||| |||||| |||||||||   |||
seq2  CTTTA--TTATGTGCTCCA--TTTCTG-GATCTC-AAAAAAGAG---AAA  1073

seq1  ATGAAGATGGGGGAAGGCGATGAATGAGGTTAATTCTCAGGGTGCTTAGA  1150
      ||| ||||   || ||||   | |||||||  ||| ||  ||||| |  |
seq2  ATG-AGAT---GGTAGGC--AGTATGAGGT--ATT-TCCAGGTGCCTTAA  1114

seq1  GAATAAGAGTCTT  1163
      |||||||||||||
seq2  GAATAAGAGTCTT  1127