BAC Information

Click to search

BAC

Clone NameB6Ng01-111O23
Chromosome13 (Build37)
Map Location 85,387,441 - 85,388,580
singlet/doubletsinglet
Overlap geneRasa1
Upstream geneTmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O23.bB6Ng01-111O23.g
ACCDH918140DH918141
length1,1801,132
definitionDH918140|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O23, 5' end.DH918141|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatatctataaatgtgatgtcaccatcaaatttatctcagagctc
agggaaccccatagaagaggaggcagagtgtaagagccacagggaatgaa
ataaatcaacctagcacatctcatatgaattcacagagactgaagcatca
agtacaagactgacacaagtctgcactaggtcttccacatatatatcata
gctcttaatttagtatttttatgggcctctggagtgtgtgaatgagaggg
tctctgactcttttgcctgatcttgggattctttcctcttgatgatttac
cttgtccaactttgatatgatgttttctctttatcttactttattttatt
ttgttatattttgtttttacctcttagtagcctattcatttccaattcga
gacagaaagagagtagatttgtgtaatagtacccaattaaacactcaaat
tgatccagggtgcactgcaaattccttgtgacctgctccaatgttctgag
ctcccagataaacacacagatgcccaaacacacacacccagcctttatat
tttgatatgcctaaaataacttaatggttgggccatttcctaacctcaat
gtggctaatcccactccctccgatattccctagttattacttactaaaat
ctatattccgtctttgttgccctagacccagtctagcagccctctcgtgt
tagcggaaaatcaaatactactattgtcccactaaaggaaggtacaaata
agataacctccttgcaacattctgttatatgcatacattggtatcttgct
cattcttcattagagaatttccctcctgcagtagatgggaacaaatattg
agaccatgggctgggcaaggtgaagaggagtgagaagaccttgaaaacaa
tcagtcttaaatgccatgtctccataaagcccctccccctcagagctcag
ggaactttgtagaagaggaggtagaaacgttgtaaagccagtaggatgta
agacaccagaatggagcccttctggtcaccagagattgaagctcattagg
aactcacgagactgtggcaacatgcattgggacctacatagtatgtgaga
ttctggtccctcttaaaagagtataataaaggacaaaccttaacttcaac
ctcaaaactaatcgccaatgggaaaactcg
gaattcagtattatgaaatccttcagattttcccttgtatctgttttaat
agtacagatttaagatgccagtaaatatttaaaatgcattcatttttcag
tgtcaaatataagacttcactgggaagtcatattaatacgtgtaagtctt
ttgtttttctgaactttatatttatgtggaatttagcataagttaaattt
gtattggtttattttaagtacctgcctagtctctttaagtatttaaagta
gagactatggcagtgaaatatcataattgtctaaagtatccttagtcaca
gtgaatccctttgagattcaatagctggtttgacagtttttattgttttg
ttttttgtttttgttttgtgtttttgagctccatatctgtgtgggtatta
agttctagtacattttttctcctaaaatatttattgaatgagtccctact
tttcagtcttaaatagttttatgatagtcgctcttcctagtgcctgccac
agcagtcatcttcttctgggccctccaagttgtcagtcatctcacactct
ctgctccagcacttagaatggcttgtctaaaattcccatcagaaattata
ctttctcaactaaaatcccgaactcattccctaccaacttcacttcagca
gatcttaaaatgatggtctgtgatgcacatgcttcttgtaacttactgcc
ttttcatttcactcttccctttgtagaccttgtaaatgcataactatttt
taatgattattaagctgtttcccagtctgggattacctgcagttgtttat
gtattttaattatgggattgagtactttaagttgagtgactgttcatgct
tttccttacatatgctgacgacttggtacatttctctgttagtctcaaat
gccctagcacatgcctatcactgtatcactgtactttctgtattttacat
ggttttcagttgttccctttgtttttctatacagagtctggacttcttag
agcaagacttactgtatcttgagtcaagttttgtattgaatatatagttt
tacataagaattaccgtgggaaataatctttaccctgtgcctcaagctat
ttttcttcagtgtctcaaatattaattcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_85387441_85388580
seq2: B6Ng01-111O23.g_69_1200 (reverse)

seq1  AGATGAA-TAATATTTTGAG-CACTGA--GAAAATAGCCTTGAGGCACAG  46
      ||||||| ||||| |||||| ||||||   ||||||| ||||||||||||
seq2  AGATGAATTAATA-TTTGAGACACTGAAGAAAAATAG-CTTGAGGCACAG  48

seq1  GGGTAAGATTATTTCCCACAGTTATTCTTATGTAAAACTTATATATTCAA  96
      ||  ||||||||||||||| || ||||||||||||||| |||||||||||
seq2  GGTAAAGATTATTTCCCACGGTAATTCTTATGTAAAAC-TATATATTCAA  97

seq1  TTACATAACTTGGACTCAAGGTAACAGGTAAGTCCTTGCTCTTAAGAAGT  146
       |||| ||||| |||||||| | ||| |||||| ||||||| ||||||||
seq2  -TACAAAACTT-GACTCAAGAT-ACA-GTAAGT-CTTGCTC-TAAGAAGT  141

seq1  CCAGACTCTGGTTATAGGAAAAACAAAGGGAACAACTGAAAACCATGTAA  196
      ||||||||||  |||| |||||||||||||||||||||||||||||||||
seq2  CCAGACTCTG--TATA-GAAAAACAAAGGGAACAACTGAAAACCATGTAA  188

seq1  AATACAGAAAGTACAGTGATACAGTGATAGGCATGTGCTAGGGCATTTGG  246
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATACAGAAAGTACAGTGATACAGTGATAGGCATGTGCTAGGGCATTT-G  237

seq1  AGACTAACAGAGAAATGTACCAAGTCGTCAGCATATGTAAGGAAAAGCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAACAGAGAAATGTACCAAGTCGTCAGCATATGTAAGGAAAAGCAT  287

seq1  GAACAGTCACTCAACTTAAAGTACTCAATCCCATAATT-AAATACATAAA  345
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAACAGTCACTCAACTTAAAGTACTCAATCCCATAATTAAAATACATAAA  337

seq1  CAACTGCAGGTAATCCCAGACTGGGAAACAGCTTAATAATCATTAAAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAGGTAATCCCAGACTGGGAAACAGCTTAATAATCATTAAAAAT  387

seq1  AGTTATGCATTTACAAGGTCTACAAAGGGAAGAGTGAAATGAAAAGGCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGCATTTACAAGGTCTACAAAGGGAAGAGTGAAATGAAAAGGCAG  437

seq1  TAAGTTACAAGAAGCATGTGCATCACAGACCATCATTTTAAGATCTGCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTACAAGAAGCATGTGCATCACAGACCATCATTTTAAGATCTGCTG  487

seq1  AAGTGAAGTTGGTAGGGAATGAGTTCGGGATTTTAGTTGAGAAAGTATAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGTTGGTAGGGAATGAGTTCGGGATTTTAGTTGAGAAAGTATAA  537

seq1  TTTCTGATGGGAATTTTAGACAAGCCATTCTAAGTGCTGGAGCAGAGAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATGGGAATTTTAGACAAGCCATTCTAAGTGCTGGAGCAGAGAGT  587

seq1  GTGAGATGACTGACAACTTGGAGGGCCCAGAAGAAGATGACTGCTGTGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGACTGACAACTTGGAGGGCCCAGAAGAAGATGACTGCTGTGGC  637

seq1  AGGCACTAGGAAGAGCGACTATCATAAAACTATTTAAGACTGAAAAGTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTAGGAAGAGCGACTATCATAAAACTATTTAAGACTGAAAAGTAG  687

seq1  GGACTCATTCAATAAATATTTTAGGAGAAAAAATGTACTAGAACTTAATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCATTCAATAAATATTTTAGGAGAAAAAATGTACTAGAACTTAATA  737

seq1  CCCACACAGATATGGAGCTCAAAAACACAAAACAAAAACAAAAAACAAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACAGATATGGAGCTCAAAAACACAAAACAAAAACAAAAAACAAAA  787

seq1  CAATAAAAACTGTCAAACCAGCTATTGAATCTCAAAGGGATTCACTGTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAACTGTCAAACCAGCTATTGAATCTCAAAGGGATTCACTGTGA  837

seq1  CTAAGGATACTTTAGACAATTATGATATTTCACTGCCATAGTCTCTACTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGATACTTTAGACAATTATGATATTTCACTGCCATAGTCTCTACTT  887

seq1  TAAATACTTAAAGAGACTAGGCAGGTACTTAAAATAAACCAATACAAATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTTAAAGAGACTAGGCAGGTACTTAAAATAAACCAATACAAATT  937

seq1  TAACTTATGCTAAATTCCACATAAATATAAAGTTCAGAAAAACAAAAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATGCTAAATTCCACATAAATATAAAGTTCAGAAAAACAAAAGAC  987

seq1  TTACACGTATTAATATGACTTCCCAGTGAAGTCTTATATTTGACACTGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACGTATTAATATGACTTCCCAGTGAAGTCTTATATTTGACACTGAA  1037

seq1  AAATGAATGCATTTTAAATATTTACTGGCATCTTAAATCTGTACTATTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATGCATTTTAAATATTTACTGGCATCTTAAATCTGTACTATTAA  1087

seq1  AACAGATACAAGGGAAAATCTGAAGGATTTCATAATACTGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATACAAGGGAAAATCTGAAGGATTTCATAATACTGAATTC  1132