BAC Information

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BAC

Clone NameB6Ng01-112D23
Chromosome13 (Build37)
Map Location 30,238,673 - 30,239,886
singlet/doubletsinglet
Overlap geneMboat1
Upstream geneLOC100041135, Cdkal1, E2f3
Downstream geneAgtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112D23.bB6Ng01-112D23.g
ACCDH918361DH918362
length1,2211,187
definitionDH918361|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D23, 5' end.DH918362|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcttctgtaatctatgagaaagtgtaatgtgtgacccattttc
cactcagcatgacaaagtttttataagagcacattttagtgttcatgaat
gagacattcaacatgtgacaagaagcctattaaagcccttttaaaggaga
cagtttaatagacaaagaatgtgttctctacttccagtctaagaaaatta
ctcttgctcaatgacttcttcacccaagtatgaacacatcatcttctctc
cttggtgtctgtggtggtttaaataaatatgggccccataggcttatagg
cagcaacactattaggagatgtggctctgatagagtaggtgtggccttat
tggaggaagtatgtcactgggggtgggctttgaggtttcaaaacctcaaa
ccagacctagtggctcactgtctctccctgctgcctgcagatcaagacgt
agatagctcagctacctctccagcaccatgtctgcctgcatgctgccatg
cttcccaccatgatgataatggactaaacctctgaacaataagccacctc
cagctgaatgttttcctttctaagtgttgccatggttatggtgtctcctc
atagcaatggaaaccctaattaagaaacaagttggtcctgggactagagt
attgatgtgataggcctggctatactttaatttggagtaatgtggacttt
ggataagaaaaactgctgaatgctgtatgtggggcttaatgggccatcct
agtaggaacatagaagacagtggtgctgagggtgatttgaactgtaggaa
cctagctcaagagattttgggggagaaacatattagtatgtgacctagcg
agcattattgtgatattttggcaaagaatgttgctgctttctccctttgt
ccaaaagaaaatcaacctcaggcgaaattgaagagttatggattagcggc
tttgacagaggaaatttccagacaccctagttgtactggggtgctgctta
tagtgatcatgttttatcagacctattatgaaaagagcagctgagtggag
aaaaatacaaaatgtacttgtttgagggagaaaaggacatcagaattgta
aaccagattaagaaaagccggtgctattggagtacatgaagtgtggacct
caactggaacctcacctacatagcttctcgatttggtgaagagacaaaga
taagtcttatagaattctact
gaattcagatgtctgggctgagctgcagaggacctcccatggcggtcact
accatctcccaccttctagaacaacacaggaatctgagctcaggttctgg
tccagtttagaaaaagagagggggacaaaggatgtgatgtgcatgcgctc
cgcttggtccagcctctgatttcacaccaggggttgaggttaacaatgct
ctcaggcttttctgtctttttccttctctacttgatccttctccatcatt
ttgcagttccaacctgtggcagatgattcagcagtatgagtcagctgagg
tcctcagagaggggctgcgaagaggccctggccccattcaatggtctctt
gtcccggtcaaaactcctttgttcctaagactttttatttattttttatt
aaaaagtattaggttattaaaattattttttttttattttactgaagcca
atgggaatctactatgtatctttctcatgtattaaatgctttatcaccaa
ttttgttgttgctgctgctgaatttaaaaaattcaccttttagtaaggca
tggttgctcttgagtattatcccagcactctagaggctgaggctgcagga
tcgctaagagtctgataccaagcctgggttacatagttgagttccaggcc
agccttggtatagagtgagacagcatcttggagagaaaaaaaaaatagta
attaaacaaacccttagcctttacactggtagcatatactcttggtatta
aatgcatgggtagacagagaagaatggataatggaggccagtctttctac
tggctcttctcctagacggctctttctcctgcatcttcttctaggggttg
actgtgtctacttgtacccaggatggtctctttttgtctgctttctgccc
acgtgaccgtgcccacgtgaccgcgcccacgtgatggcctaccttttctc
agttgcttttctctctacttctatttgtgctctcatctacctgtttctta
gagctgcttcattcagcacgaggagcttgaagatttctgacctccttctg
ccctttctgtccattcaggaacagcgtgcctttgtacaatacttattgac
ctgctcttgtttgggctaagaaggctggtcaagtctcctttagactatca
gaattgacagttcccgaatccccctcatgcgggagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_30238673_30239886
seq2: B6Ng01-112D23.g_64_1250

seq1  GAATTCAGATGTCTGGGCTGAGCTGCAGAGGACCTCCCATGGCGGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTCTGGGCTGAGCTGCAGAGGACCTCCCATGGCGGTCACT  50

seq1  ACCATCTCCCACCTTCTAGAACAACACAGGAATCTGAGCTCAGGTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCCCACCTTCTAGAACAACACAGGAATCTGAGCTCAGGTTCTGG  100

seq1  TCCAGTTTAGAAAAAGAGAGGGGGACAAAGGATGTGATGTGCATGCGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTAGAAAAAGAGAGGGGGACAAAGGATGTGATGTGCATGCGCTC  150

seq1  CGCTTGGTCCAGCCTCTGATTTCACACCAGGGGTTGAGGTTAACAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGGTCCAGCCTCTGATTTCACACCAGGGGTTGAGGTTAACAATGCT  200

seq1  CTCAGGCTTTTCTGTCTTTTTCCTTCTCTACTTGATCCTTCTCCATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTTTTCTGTCTTTTTCCTTCTCTACTTGATCCTTCTCCATCATT  250

seq1  TTGCAGTTCCAACCTGTGGCAGATGATTCAGCAGTATGAGTCAGCTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTCCAACCTGTGGCAGATGATTCAGCAGTATGAGTCAGCTGAGG  300

seq1  TCCTCAGAGAGGGGCTGCGAAGAGGCCCTGGCCCCATTCAATGGTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAGAGGGGCTGCGAAGAGGCCCTGGCCCCATTCAATGGTCTCTT  350

seq1  GTCCCGGTCAAAACTCCTTTGTTCCTAAGACTTTTTATTTATTTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGGTCAAAACTCCTTTGTTCCTAAGACTTTTTATTTATTTTTTATT  400

seq1  AAAAAGTATTAGGTTATTAAAATTATTTTTTTTTTATTTTACTGAAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTATTAGGTTATTAAAATTATTTTTTTTTTATTTTACTGAAGCCA  450

seq1  ATGGGAATCTACTATGTATCTTTCTCATGTATTAAATGCTTTATCACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATCTACTATGTATCTTTCTCATGTATTAAATGCTTTATCACCAA  500

seq1  TTTTGTTGTTGCTGCTGCTGAATTTAAAAAATTCACCTTTTAGTAAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTGCTGCTGCTGAATTTAAAAAATTCACCTTTTAGTAAGGCA  550

seq1  TGGTTGCTCTTGAGTATTATCCCAGCACTCTAGAGGCTGAGGCTGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTCTTGAGTATTATCCCAGCACTCTAGAGGCTGAGGCTGCAGGA  600

seq1  TCGCTAAGAGTCTGATACCAAGCCTGGGTTACATAGTTGAGTTCCAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAAGAGTCTGATACCAAGCCTGGGTTACATAGTTGAGTTCCAGGCC  650

seq1  AGCCTTGGTATAGAGTGAGACAGCATCTTGGAGAGAAAAAAAAAATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGTATAGAGTGAGACAGCATCTTGGAGAGAAAAAAAAAATAGTA  700

seq1  ATTAAACAAACCCTTAGCCTTTACACTGGTAGCATATACTCTTGGTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAACCCTTAGCCTTTACACTGGTAGCATATACTCTTGGTATTA  750

seq1  AATGCATGGGTAGACAGAGAAGAATGGATAATGGAGGCCAGTCTTTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGGGTAGACAGAGAAGAATGGATAATGGAGGCCAGTCTTTCTAC  800

seq1  TGGCTCTTCTCCTAGACGGCTCTTTCTCCTGCATCTTCTTCTAGGGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTCTCCTAGACGGCTCTTTCTCCTGCATCTTCTTCTAGGGGTTG  850

seq1  ACTGTGTCTACTTGTACCCAGGATGGTCTC-TTTTGTCTGCTTTCTGCCC  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTGTGTCTACTTGTACCCAGGATGGTCTCTTTTTGTCTGCTTTCTGCCC  900

seq1  ACGTGACCGTGCCCACGTGACCGCGCCCACGTGATGGCCTACCTTTCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  ACGTGACCGTGCCCACGTGACCGCGCCCACGTGATGGCCTACCTTTTCTC  950

seq1  AGTTTGCTTTTTCTCTCTACTTCTATTTTGTGCTCCTCCATTCTTACCTT  999
      || |||| ||||||||||||||||| |||||||||   |||   |||| |
seq2  AG-TTGC-TTTTCTCTCTACTTCTA-TTTGTGCTC--TCAT--CTACC-T  992

seq1  GTTTCTTAGAAGCTGCTTCATATCAGCACGAGGAGCTTTGAAGATATCTG  1049
      ||||||||| ||||||||||| |||||||||||||| |||||||| ||||
seq2  GTTTCTTAG-AGCTGCTTCAT-TCAGCACGAGGAGC-TTGAAGATTTCTG  1039

seq1  ACCTCCTTCCTGCCCTTTCTGTTCCATTTCAGGAACAGCCGTGGCCTTTT  1099
      |||||||| |||||||||||| |||| ||||||||||| ||||  | |||
seq2  ACCTCCTT-CTGCCCTTTCTG-TCCA-TTCAGGAACAG-CGTG--CCTTT  1083

seq1  GTACATATACTTATTGACCTGCTCTTGTTTGGGGCGTAAGAGGGCTGGGT  1149
      ||||| |||||||||||||||||||||||||||   ||||| |||| |||
seq2  GTACA-ATACTTATTGACCTGCTCTTGTTTGGG--CTAAGAAGGCT-GGT  1129

seq1  CAAGGTCTC--TTAGCACCTAACCCAGGAATATGAAGAGTTCCCGATCAC  1197
      ||| |||||  ||||   ||| |    |||| || | |||||||||   |
seq2  CAA-GTCTCCTTTAG--ACTATC---AGAAT-TG-ACAGTTCCCGA-ATC  1170

seq1  CCCTTCATGCGGGAGCT  1214
      ||| |||||||||||||
seq2  CCCCTCATGCGGGAGCT  1187