BAC Information

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BAC

Clone NameB6Ng01-112H01
ChromosomeX (Build37)13 (Build37)
Map Location 140,555,266 - 140,555,80160,804,147 - 60,805,311
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112H01.bB6Ng01-112H01.g
ACCDH918504DH918505
length1,0711,148
definitionDH918504|Mus musculus domesticus DNA, BAC clone: B6Ng01-112H01, 5' end.DH918505|Mus musculus domesticus DNA, BAC clone: B6Ng01-112H01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,555,266 - 140,555,801)(60,804,147 - 60,805,311)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ttttctgatttaggttaggtaaagatcctttcccaatctgttggcggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagcacatgccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcgtctataagtttcagtgtctcttgttttatgtgaagttctttga
tccacttagatttgaccttagtacaaggaaataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcgccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttatcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgatttccaccagaggttctt
ttatcctttgagaagagcttttgctatcctaggttttttgttattccaga
caaatttgcaaatttgctcccttccaattcgttgaagaattgagttggaa
ttttgatggggattgcattgaatctgtagattgcttttggcaagatagcc
atttttacaatgttgatcctgccaatccatgagcattgggagatctttcc
atcttctgagatcttcttttaatttctttcttcagagaattgaagttttt
atcatacagatctttcacctccttagttagcattacgccaagaatatttt
atactatttgtgactatgagaaggtgtgtttccctaatttccttcttcag
cctggttaatcttgtatagagaaaggccattgacttgtttgagtttaatt
ttaaatcccagctacttcacc
gaattcttggatggtatttgagtcacaagaagctagagacagacagtaca
cccacaagctggtgctccataagagagcatgaacacctcagaccttggga
ccattgctttattaaccagggtccacaacaggtcagcagcaatttttcca
gaattatctgtaagccccttgggcccatccttataaaacattgtttagaa
agtaaatggaaaaacttctagaaacatccatgcattgctcttcctcctaa
tttttatttccaaataacttttatctcacctcttcttgactatcttggtt
attaaaaatatatatctttacatttatttttatattttgagaatttcata
tatgggtactctatttacatactttttactcctaccaactatccctatac
cccctccctctgaacatcatgacttcttccatatatatatatatgcacaa
cttcatccatatatatatatatatatgcacacatatgtataaatatatgt
atacacacacacacaatcacacatacataacctgctgagtgcatttagtg
ttacttgtatgcatacatgttagggttgaccacttgctgttggatagcct
attagggagcttgcccctggagaagattctccctctctcagtagtcattt
attccctgtagctcttcatctaggtatggggacttgtgagattttcctaa
ccacttgggatgtcaactggtgatgtcactgtcaaagtcatgcttaggcg
gccatattgttaagatttcatgtgtgtcctatgtagaagacactgtctca
tggtggatctccttcccggtcctctggctcttccaatctctccaatgttt
cctgagctttaggggcagggtttgtttatagctgtgttggactgggggcc
ccatgattagtgttctctgcattttgaccggttgtagtttttgtgatgat
ctccatcggatatcttttaatgtatgggacgtgttttaaaatagtgtggc
atttctgtgatgccaatgagagaagcaaaagcataacacagccatatcac
tgtgcgcttgtcttacttgaagcatcagcagcattctagctgtcacgata
cagtttctaaggacagccacataagatgcagaatgtcgatacagtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_140555266_140555801
seq2: B6Ng01-112H01.b_575_1116 (reverse)

seq1  GGTGAAGTAGCT-GGATATAAAA-TAAACTCAAACAAGTCAATGGCCTTT  48
      |||||||||||| |||| ||||| ||||||||||||||||||||||||||
seq2  GGTGAAGTAGCTGGGATTTAAAATTAAACTCAAACAAGTCAATGGCCTTT  50

seq1  CTCTATACAAAGAATAAACAGGCTG-AGAAAGAAATTAGGGAAACAACAC  97
      |||||||| |||| ||| ||||||| |||| |||||||||||||| ||| 
seq2  CTCTATAC-AAGATTAACCAGGCTGAAGAAGGAAATTAGGGAAAC-ACA-  97

seq1  CCTTCTCAATAGTCACAAATAATATAAAATA-TCTTGGCGTGACTCTAAC  146
      ||||||| ||||||||||||| ||||||||| ||||||||| |  |||||
seq2  CCTTCTC-ATAGTCACAAATAGTATAAAATATTCTTGGCGTAATGCTAAC  146

seq1  TAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAG  196
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAATTCTCTGAAGAAAG  196

seq1  AAATT-AAAGAAGATCTCAGAAGATGGAAAGATCTCCC-ATGCTCATGGA  244
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATTAAAAGAAGATCTCAGAAGATGGAAAGATCTCCCAATGCTCATGGA  246

seq1  TTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC  296

seq1  AGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATT  346

seq1  GGAA-GGAGC-AATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGAT  392
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAGCAAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGAT  396

seq1  AGCAAAAAGTCTTCTC-AAGGATAAAAGAACTTCTGGCGG-AATCACCAT  440
      |||||||  ||||||| |||||||||||||| ||||| || |||||||||
seq2  AGCAAAAGCTCTTCTCAAAGGATAAAAGAACCTCTGGTGGAAATCACCAT  446

seq1  GCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGT  490
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGT  496

seq1  ACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGA  542

seq1: chr13_60804147_60805311
seq2: B6Ng01-112H01.g_64_1211

seq1  GAATTCTTGGATGGTATTTGAGTCACAAGAAGCTAGAGACAGACAGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGATGGTATTTGAGTCACAAGAAGCTAGAGACAGACAGTACA  50

seq1  CCCACAAGCTGGTGCTCCATAAGAGAGCATGAACACCTCAGACCTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGCTGGTGCTCCATAAGAGAGCATGAACACCTCAGACCTTGGGA  100

seq1  CCATTGCTTTATTAACCAGGGTCCACAACAGGTCAGCAGCAATTTTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTTTATTAACCAGGGTCCACAACAGGTCAGCAGCAATTTTTCCA  150

seq1  GAATTATCTGTAAGCCCCTTGGGCCCATCCTTATAAAACATTGTTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCTGTAAGCCCCTTGGGCCCATCCTTATAAAACATTGTTTAGAA  200

seq1  AGTAAATGGAAAAACTTCTAGAAACATCCATGCATTGCTCTTCCTCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGGAAAAACTTCTAGAAACATCCATGCATTGCTCTTCCTCCTAA  250

seq1  TTTTTATTTCCAAATAACTTTTATCTCACCTCTTCTTGACTATCTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTCCAAATAACTTTTATCTCACCTCTTCTTGACTATCTTGGTT  300

seq1  ATTAAAAATATATATCTTTACATTTATTTTTATATTTTGAGAATTTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATATATATCTTTACATTTATTTTTATATTTTGAGAATTTCATA  350

seq1  TATGGGTACTCTATTTACATACTTTTTACTCCTACCAACTATCCCTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTACTCTATTTACATACTTTTTACTCCTACCAACTATCCCTATAC  400

seq1  CCCCTCCCTCTGAACATCATGACTTCTTCCATATATATATATATGCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTCTGAACATCATGACTTCTTCCATATATATATATATGCACAA  450

seq1  CTTCATCCATATATATATATATATATGCACACATATGTATAAATATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCATATATATATATATATATGCACACATATGTATAAATATATGT  500

seq1  ATACACACACACACAATCACACATACATAACCTGCTGAGTGCATTTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACAATCACACATACATAACCTGCTGAGTGCATTTAGTG  550

seq1  TTACTTGTATGCATACATGTTAGGGTTGACCACTTGCTGTTGGATAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTATGCATACATGTTAGGGTTGACCACTTGCTGTTGGATAGCCT  600

seq1  ATTAGGGAGCTTGCCCCTGGAGAAGATTCTCCCTCTCTCAGTAGTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGAGCTTGCCCCTGGAGAAGATTCTCCCTCTCTCAGTAGTCATTT  650

seq1  ATTCCCTGTAGCTCTTCATCTAGGTATGGGGACTTGTGAGATTTTCCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGTAGCTCTTCATCTAGGTATGGGGACTTGTGAGATTTTCCTAA  700

seq1  CCACTTGGGATGTCAACTGGTGATGTCACTGTCAAAGTCATGCTTAGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGGATGTCAACTGGTGATGTCACTGTCAAAGTCATGCTTAGGCG  750

seq1  GCCATATTGTTAAGATTTCATGTGTGTCCTATGTAGAAGACACTGTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTGTTAAGATTTCATGTGTGTCCTATGTAGAAGACACTGTCTCA  800

seq1  TGGTGGATCTCCTTCCCGGTCCTCTGGCTCTTCCAATCTCTCCAATGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGATCTCCTTCCCGGTCCTCTGGCTCTTCCAATCTCTCCAATGTTT  850

seq1  CCTGAGCTTTAGGGGCAGGGTTTGTTTATAGCTGTGTTGGGACTGGGGGC  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTGAGCTTTAGGGGCAGGGTTTGTTTATAGCTGTGTT-GGACTGGGGGC  899

seq1  CCCATGATTAGGTGTTCTCTGCATTTTGACCGGTTGTAGGTTTTTGTGAT  950
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  CCCATGATTA-GTGTTCTCTGCATTTTGACCGGTTGTA-GTTTTTGTGAT  947

seq1  GATCTCCATTCGGATATCTTTTAAATGTATGGAACGTGTTTTTAAAATAG  1000
      |||||||| ||||||||||||| ||||||||| ||||| |||||||||||
seq2  GATCTCCA-TCGGATATCTTTT-AATGTATGGGACGTG-TTTTAAAATAG  994

seq1  TGTGGCCATTTCTGTGATGCCAATGAGGAGAAGCAGAGCCATAACACAGC  1050
      ||||| |||||||||||||||||||| |||||||| |  |||||||||||
seq2  TGTGG-CATTTCTGTGATGCCAATGA-GAGAAGCAAAAGCATAACACAGC  1042

seq1  CATAATCACTGTGCGCTTGTCTTACTTGACAGCATCAGCAGCATTTCTAG  1100
      ||| ||||||||||||||||||||||||| ||||||||||||| ||||| 
seq2  CAT-ATCACTGTGCGCTTGTCTTACTTGA-AGCATCAGCAGCA-TTCTA-  1088

seq1  GCTGTGCACGATAGCAGTTCCCAAGGACAGCCACCATAAGATGCCAAGAA  1150
      ||||| ||||||| ||||| | ||||||||||| ||||||||||  ||||
seq2  GCTGT-CACGATA-CAGTTTCTAAGGACAGCCA-CATAAGATGC--AGAA  1133

seq1  TGCTGATACACTGTC  1165
      ||  |||||| ||||
seq2  TGTCGATACAGTGTC  1148