BAC Information

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BAC

Clone NameB6Ng01-112L17
Chromosome13 (Build37)
Map Location 106,357,513 - 106,555,976
singlet/doubletdoublet
Overlap genenone
Upstream geneSdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a
Downstream geneEG668025, Olfr717-ps1, LOC631097, EG620949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112L17.bB6Ng01-112L17.g
ACCDH918720DH918721
length9291,133
definitionDH918720|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L17, 5' end.DH918721|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,555,049 - 106,555,976)(106,357,513 - 106,358,653)
sequence
gaattcctatttaattagcaatagtgtttctaaactgtatatatatgaag
ggcaactgaggaaaaacatttaaagttgacctttggcctccacaaacata
tgtgcaatatatgcattcacagtactctcaggaaaaaaagaagctgtgat
aatagcaataatctaatctagatggacatggtacccttgggatttgtaat
atatttagctttcttaattctggacaaatttagaattctacctttacctc
cttcagtattttaaagcaatttttaggtgttttatcaaatgtacctcaaa
tctgattaattttttatgtttgtgcttgacttgtttatttttctaaaaat
atccactagtgttgctttctgtttggcaatgatagttttagttacttggt
taagacttttatgttcttgttgtgagcctagcctttaacacatgaactat
ctttccaacctgcttggttgaggttttgattgaggcctgaaaacttgctc
taaagcatattttgtccattatattgatgggagggattgtgtaaattgct
tcctgattaacatccattaattatctttacgtacacatagtgattttcca
atttcatcatttatactatagttactactgttatcaatagcattattcta
ctctacacttatgagtctacttggactcacacatttttaaacatatattt
tatatttgttcagtaggatataattaaatatcagcaatcatttatgtggc
aactttctttaatagtgaagggagaacctctttattctggaaaatatgtc
agtttttaagtggcacccatattccttgactaatttgtaaaacaataagt
atttaaatctaggaaattcacacataaaacttttgtgtttatatatatat
atatatatatatatatatatacacatata
gaattccacgggctgcaaatatacattttggaatgtgtcatgcacatgat
gtttagatgaaatcagtatctgatcatataagaagaggaggaggactgag
ggcattttctgattgagaaactgtgataaacatgagaaataggcagaagg
cgctgagaacatatgcctgagaggaagaataaaacccagcagtgaactaa
agccaaacatgaagttatgtaaataaaacatcccagagagaagagaagat
tgagctgaagaaatccaatttgaaggcaggtaaggatgaaaagcgttaga
acttggtgtggacttagtgggtgcccttaccaatgacatttttataggac
tgtaccttaatgagatgctatgtttgggttttgtggagccccttgaatct
gaagatgggatctgcaagaaatgccgatgcattttaatattctaattcct
ttacatattatctatttcagttcccagaattattttgattggttgcctgt
ggaacctaattttagaagtttattatgtcatatccttttattctccttgt
gtctaattcttttaggaagtattcatcgtttacctggagaacattcatat
ttcatacagtatgttcaaattttgaggagacaatacacagtagccacaac
actagcttggctgcattgtgatgattaggcttaactagttgctcatcatg
gacagctggattttaatcacatcattgacagagggctgaaagcctgtatt
tgtctataggtaaaggtggttaggtttgatgtgcactttcctagccctat
gaaaacatagccattatatacactgtaaaatccacaggctgtaaacatca
ccactagcacggaacatcattggcacaggatccatcacatgaggtctaag
gtaatgcacctgagttttcttttttaggtacaattctcatccaaagggtt
tcctttcctttctcagtcacttcaaagatggagccagtgcagtaccactt
cagatcttctgtgtggagactaccgtgttcttttgagaatccttattgtg
gctaacagccagcattctcaagctgatgggtcaagcctatgaataacact
ctggtctacatgagcacactatacaagccacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106555049_106555976
seq2: B6Ng01-112L17.b_49_977 (reverse)

seq1  TATATGTGTATATATATATATATATATATATATATATATAAAACACAAAA  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATATGTGTATATATATATATATATATATATATATATAT-AAACACAAAA  49

seq1  GTTTTATGTGTGAATTTCCTAGATTTAAATACTTATTGTTTTACAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTGTGAATTTCCTAGATTTAAATACTTATTGTTTTACAAATTA  99

seq1  GTCAAGGAATATGGGTGCCACTTAAAAACTGACATATTTTCCAGAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGAATATGGGTGCCACTTAAAAACTGACATATTTTCCAGAATAAA  149

seq1  GAGGTTCTCCCTTCACTATT-AAGAAAGTTGCCACATAAATGATTGCTGA  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGTTCTCCCTTCACTATTAAAGAAAGTTGCCACATAAATGATTGCTGA  199

seq1  TATTTAATTATATCCTACTGAACAAATAT-AAATATATGTTTAAAAATGT  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATTTAATTATATCCTACTGAACAAATATAAAATATATGTTTAAAAATGT  249

seq1  GTGAGTCCAAGTAGACTCATAAGTGTAGAGTAGAATAATGCTATTGATAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCCAAGTAGACTCATAAGTGTAGAGTAGAATAATGCTATTGATAA  299

seq1  CAGTAGTAACTATAGTATAAATGATGAAATTGGAAAATCACTATGTGTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTAACTATAGTATAAATGATGAAATTGGAAAATCACTATGTGTAC  349

seq1  GTAAAGATAATTAATGGATGTTAATCAGGAAGCAATTTACACAATCCCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATAATTAATGGATGTTAATCAGGAAGCAATTTACACAATCCCTC  399

seq1  CCATCAATATAATGGACAAAATATGCTTTAGAGCAAGTTTTCAGGCCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATATAATGGACAAAATATGCTTTAGAGCAAGTTTTCAGGCCTCA  449

seq1  ATCAAAACCTCAACCAAGCAGGTTGGAAAGATAGTTCATGTGTTAAAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACCTCAACCAAGCAGGTTGGAAAGATAGTTCATGTGTTAAAGGC  499

seq1  TAGGCTCACAACAAGAACATAAAAGTCTTAACCAAGTAACTAAAACTATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCACAACAAGAACATAAAAGTCTTAACCAAGTAACTAAAACTATC  549

seq1  ATTGCCAAACAGAAAGCAACACTAGTGGATATTTTTAGAAAAATAAACAA  598
      |||||||||||||||||||||||||||||||||                 
seq2  ATTGCCAAACAGAAAGCAACACTAGTGGATATTNNNNNNNNNNNNNNNNN  599

seq1  GTCAAGCACAAACATAAAAAATTAATCAGATTTGAGGTACATTTGATAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCACAAACATAAAAAATTAATCAGATTTGAGGTACATTTGATAAA  649

seq1  ACACCTAAAAATTGCTTTAAAATACTGAAGGAGGTAAAGGTAGAATTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAAAAATTGCTTTAAAATACTGAAGGAGGTAAAGGTAGAATTCTA  699

seq1  AATTTGTCCAGAATTAAGAAAGCTAAATATATTACAAATCCCAAGGGTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCCAGAATTAAGAAAGCTAAATATATTACAAATCCCAAGGGTAC  749

seq1  CATGTCCATCTAGATTAGATTATTGCTATTATCACAGCTTCTTTTTTTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCATCTAGATTAGATTATTGCTATTATCACAGCTTCTTTTTTTCC  799

seq1  TGAGAGTACTGTGAATGCATATATTGCACATATGTTTGTGGAGGCCAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTACTGTGAATGCATATATTGCACATATGTTTGTGGAGGCCAAAG  849

seq1  GTCAACTTTAAATGTTTTTCCTCAGTTGCCCTTCATATATATACAGTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTTAAATGTTTTTCCTCAGTTGCCCTTCATATATATACAGTTTA  899

seq1  GAAACACTATTGCTAATTAAATAGGAATTC  928
      ||||||||||||||||||||||||||||||
seq2  GAAACACTATTGCTAATTAAATAGGAATTC  929

seq1: chr13_106357513_106358653
seq2: B6Ng01-112L17.g_67_1199

seq1  GAATTCCACGGGCTGCAAATATACATTTTGGAATGTGTCATGCACATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGGCTGCAAATATACATTTTGGAATGTGTCATGCACATGAT  50

seq1  GTTTAGATGAAATCAGTATCTGATCATATAAGAAGAGGAGGAGGACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATGAAATCAGTATCTGATCATATAAGAAGAGGAGGAGGACTGAG  100

seq1  GGCATTTTCTGATTGAGAAACTGTGATAAACATGAGAAATAGGCAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTCTGATTGAGAAACTGTGATAAACATGAGAAATAGGCAGAAGG  150

seq1  CGCTGAGAACATATGCCTGAGAGGAAGAATAAAACCCAGCAGTGAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGAACATATGCCTGAGAGGAAGAATAAAACCCAGCAGTGAACTAA  200

seq1  AGCCAAACATGAAGTTATGTAAATAAAACATCCCAGAGAGAAGAGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACATGAAGTTATGTAAATAAAACATCCCAGAGAGAAGAGAAGAT  250

seq1  TGAGCTGAAGAAATCCAATTTGAAGGCAGGTAAGGATGAAAAGCGTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGAAGAAATCCAATTTGAAGGCAGGTAAGGATGAAAAGCGTTAGA  300

seq1  ACTTGGTGTGGACTTAGTGGGTGCCCTTACCAATGACATTTTTATAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGTGGACTTAGTGGGTGCCCTTACCAATGACATTTTTATAGGAC  350

seq1  TGTACCTTAATGAGATGCTATGTTTGGGTTTTGTGGAGCCCCTTGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTAATGAGATGCTATGTTTGGGTTTTGTGGAGCCCCTTGAATCT  400

seq1  GAAGATGGGATCTGCAAGAAATGCCGATGCATTTTAATATTCTAATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGGATCTGCAAGAAATGCCGATGCATTTTAATATTCTAATTCCT  450

seq1  TTACATATTATCTATTTCAGTTCCCAGAATTATTTTGATTGGTTGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATTATCTATTTCAGTTCCCAGAATTATTTTGATTGGTTGCCTGT  500

seq1  GGAACCTAATTTTAGAAGTTTATTATGTCATATCCTTTTATTCTCCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTAATTTTAGAAGTTTATTATGTCATATCCTTTTATTCTCCTTGT  550

seq1  GTCTAATTCTTTTAGGAAGTATTCATCGTTTACCTGGAGAACATTCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTCTTTTAGGAAGTATTCATCGTTTACCTGGAGAACATTCATAT  600

seq1  TTCATACAGTATGTTCAAATTTTGAGGAGACAATACACAGTAGCCACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGTATGTTCAAATTTTGAGGAGACAATACACAGTAGCCACAAC  650

seq1  ACTAGCTTGGCTGCATTGTGATGATTAGGCTTAACTAGTTGCTCATCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTGGCTGCATTGTGATGATTAGGCTTAACTAGTTGCTCATCATG  700

seq1  GACAGCTGGATTTTAATCACATCATTGACAGAGGGCTGAAAGCCTGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGATTTTAATCACATCATTGACAGAGGGCTGAAAGCCTGTATT  750

seq1  TGTCTATAGGTAAAGGTGGTTAGGTTTGATGTGCACTTTCCTAGCCCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATAGGTAAAGGTGGTTAGGTTTGATGTGCACTTTCCTAGCCCTAT  800

seq1  GAAAACATAGCCATTATATACACTGTAAAATCCACAGGCTGTAAACATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATAGCCATTATATACACTGTAAAATCCACAGGCTGTAAACATCA  850

seq1  CCACTAGCACGGAACATCATTGGCACAGGATCCATCACATGAGGTCTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGCACGGAACATCATTGGCACAGGATCCATCACATGAGGTCTAAG  900

seq1  GTAATGCACCTGAGTTTTCTTTTTTAGGTACAATTCTCATCCAAAGGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCACCTGAGTTTTCTTTTTTAGGTACAATTCTCATCCAAAGGGTT  950

seq1  TCCTTTCC-TTCTCAGTCACTTCAAAGATGGAGCCAGTGCAGTACCACTT  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTTTCTCAGTCACTTCAAAGATGGAGCCAGTGCAGTACCACTT  1000

seq1  CAGGATCTCCTGTGTGGAGACTACCCGGTGTTC-TCTGAGATTCCTTAAT  1048
      || ||||| ||||||||||||||||  |||||| | ||||| |||||| |
seq2  CA-GATCTTCTGTGTGGAGACTACC--GTGTTCTTTTGAGAATCCTTATT  1047

seq1  GGGGCAAAACAGGCAGCATTCTCCACAGCTGGATGGGTCAAGCCATAGAA  1098
      | |||  ||||| ||||||||||   |||| |||||||||||||   |||
seq2  GTGGC-TAACAGCCAGCATTCTC--AAGCT-GATGGGTCAAGCCTATGAA  1093

seq1  TAACACTCTGGTCTAACATGAGGCACACTATACAAAGCCACAG  1141
      |||||||||||||| |||||| ||||||||||| |||||||||
seq2  TAACACTCTGGTCT-ACATGA-GCACACTATAC-AAGCCACAG  1133