BAC Information

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BAC

Clone NameB6Ng01-112M16
Chromosome13 (Build37)
Map Location 59,776,124 - 59,898,866
singlet/doubletdoublet
Overlap geneGolph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Upstream geneLOC435361, Ntrk2, LOC100041533, Agtpbp1, Mak10
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112M16.bB6Ng01-112M16.g
ACCDH918761DH918762
length676959
definitionDH918761|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M16, 5' end.DH918762|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,898,215 - 59,898,866)(59,776,124 - 59,777,089)
sequence
attttccatcccgcaacaaattttacaggagcaggagaagtggcttgcag
acactctgacctctgagtgtgtgcacttgtgtattgagccacacacaaag
gtaaaaaccaatcttctaaagtacgtaggaagcattgctcttagagtatg
aaatgtcataggatggcctacatctttcctcgaaacatccttgcattttg
gcataaagtgatgtccactattctttcatgtcatatacagctgtgtattt
aagtaaactaagggaatcattaagaatcaatgtgtagtgaaaaagatgct
gaggcaggcaagatggctcaacagataaatgaccttcctgccaagcctgg
tccctgacttcaccgctcagataatggaaggaaaacccaactcctgcatg
tttatgttgtcctctgacctccttatgcacacatgctgacacaataaata
aataagtgaataattgttataaaatatttgaagaccttaattactagagg
atagttagcaattggtattttggattcatgaaagggccattttttaaata
aaaactaattacatgtactcaggtaatgagctattactttgtcttctgtc
cctaacaggaactaaattgagcttgtttggctcctctaaaaatggatttg
gggttcaaacagagtgaccttgacgt
gaattccatttactgtccagtaacactttcaggagcgtgtgcctgacgag
tcttcacactgactacggttttctctttgcaaaggaaaaggactcttgcc
agtagctgggacttggttgaatgcttctctaagatgactaacgatagctg
ggacgcccagtgacaaggcttgtggcttcccaggcctccagccctcacct
tcggaaatacaactaactgtccaagcgacccaagagatggccattcatac
acgctcagccattgcactgcgctaagcggctcagcaaactggtgtgcacg
tcactccactcccgctcctgaagaacgaatgttcctaggtatgtgaaaaa
aaaaatgtaaggccctgagaccccctaaccagacaaagaaagcctcaagt
cttgaaagtcaaaacagaaaaaaagttattagcacacgttgagatgatag
cggaaaacggctagcccacacacagactttcccgacctcactattcgtaa
attgctaggaagaactcctcaaaactgggactgtttcccgatcttgtttt
acattcttaaagtaacctctaacggttttaaatacagtgcagaaaagagt
atcaaaatcccagcgactgctcccagaacagagcaaaagttgttagggtg
ttccacccaggcaagaagcatcctagaaagccggctgcagctgccggtgg
ctggcgaccgaccctgcacccgggggactcaggggccactttgcagggtc
tgccggggcgggacgagggcaggaggaggagaaaagaaagggaggagagg
acgagagggaagacagtcggaggagagggaaagagagatgacgaggaagg
gagggacgagaagcgggggagcgagggaggaggcggcgcctaaatagaag
ctgaggagcgggagcagagcccgggcggtggcccccttctcccacgggag
atctcacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59898215_59898866
seq2: B6Ng01-112M16.b_23_676 (reverse)

seq1  ACGTCAAGGTCACTCTGTTTGAA-CCCAAATCCATTTTTGGAGGAGCCAA  49
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  ACGTCAAGGTCACTCTGTTTGAACCCCAAATCCATTTTTAGAGGAGCCAA  50

seq1  ACAAGCTCAATTTAGTTCCTGTTAGGGACAGATGAC-AAGTAATAGCTCA  98
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  ACAAGCTCAATTTAGTTCCTGTTAGGGACAGAAGACAAAGTAATAGCTCA  100

seq1  TTACCTGAGTACATGTAATTAGTTTTTATTTAAAAAATGGCCCTTTCATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGAGTACATGTAATTAGTTTTTATTTAAAAAATGGCCCTTTCATG  150

seq1  AATCCAAAATACCAATTGCTAACTATCCTCTTGTAATTAAGGTCTTCAAA  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATCCAAAATACCAATTGCTAACTATCCTCTAGTAATTAAGGTCTTCAAA  200

seq1  TATTTTATAACAATTATTCACTTATTTATTTATTGTGTCAGCATGTGTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAACAATTATTCACTTATTTATTTATTGTGTCAGCATGTGTGC  250

seq1  ATAAGGAGGTCAGAGGACAACATAAACATGCAGGAGTTGGGTTTTCCTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGGTCAGAGGACAACATAAACATGCAGGAGTTGGGTTTTCCTTC  300

seq1  CATTATCTGAGCGGTGAAGTCAGGGACCAGGCTTGGCAGGAAGGTCATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTGAGCGGTGAAGTCAGGGACCAGGCTTGGCAGGAAGGTCATTT  350

seq1  ATCTGTTGAGCCATCTTGCCTGCCTCAGCATCTTTTTCACTACACATTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGAGCCATCTTGCCTGCCTCAGCATCTTTTTCACTACACATTGA  400

seq1  TTCTTAATGATTCCCTTAGTTTACTTAAATACACAGCTGTATATGACATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGATTCCCTTAGTTTACTTAAATACACAGCTGTATATGACATG  450

seq1  AAAGAATAGTGGACATCACTTTATGCCAAAATGCAAGGATGTTTCGAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGTGGACATCACTTTATGCCAAAATGCAAGGATGTTTCGAGGA  500

seq1  AAGATGTAGGCCATCCTATGACATTTCATACTCTAAGAGCAATGCTTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGGCCATCCTATGACATTTCATACTCTAAGAGCAATGCTTCCT  550

seq1  ACGTACTTTAGAAGATTGGTTTTTACCTTTGTGTGTGGCTCAATACACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACTTTAGAAGATTGGTTTTTACCTTTGTGTGTGGCTCAATACACAA  600

seq1  GTGCACACACTCAGAGGTCAGAGTGTCTGCAAGCCACTTCTCCTGCTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACACTCAGAGGTCAGAGTGTCTGCAAGCCACTTCTCCTGCTCCT  650

seq1  GTAA  652
      ||||
seq2  GTAA  654

seq1: chr13_59776124_59777089
seq2: B6Ng01-112M16.g_68_1026

seq1  GAATTCCATTTACTGTCCAGTAACACTTTCAGGAGCGTGTGCCTGACGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTACTGTCCAGTAACACTTTCAGGAGCGTGTGCCTGACGAG  50

seq1  TCTTCACACTGACTACGGTTTTCTCTTTGCAAAGGAAAAGGACTCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACACTGACTACGGTTTTCTCTTTGCAAAGGAAAAGGACTCTTGCC  100

seq1  AGTAGCTGGGACTTGGTTGAATGCTTCTCTAAGATGACTAACGATAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGGGACTTGGTTGAATGCTTCTCTAAGATGACTAACGATAGCTG  150

seq1  GGACGCCCAGTGACAAGGCTTGTGGCTTCCCAGGCCTCCAGCCCTCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCCCAGTGACAAGGCTTGTGGCTTCCCAGGCCTCCAGCCCTCACCT  200

seq1  TCGGAAATACAACTAACTGTCCAAGCGACCCAAGAGATGGCCATTCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAATACAACTAACTGTCCAAGCGACCCAAGAGATGGCCATTCATAC  250

seq1  ACGCTCAGCCATTGCACTGCGCTAAGCGGCTCAGCAAACTGGTGTGCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCAGCCATTGCACTGCGCTAAGCGGCTCAGCAAACTGGTGTGCACG  300

seq1  TCACTCCACTCCCGCTCCTGAAGAACGAATGTTCCTAGGTATGTGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCACTCCCGCTCCTGAAGAACGAATGTTCCTAGGTATGTGAAAAA  350

seq1  AAAAATGTAAGGCCCTGAGACCCCCTAACCAGACAAAGAAAGCCTCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAAGGCCCTGAGACCCCCTAACCAGACAAAGAAAGCCTCAAGT  400

seq1  CTTGAAAGTCAAAACAGAAAAAAAGTTATTAGCACACGTTGAGATGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGTCAAAACAGAAAAAAAGTTATTAGCACACGTTGAGATGATAG  450

seq1  CGGAAAACGGCTAGCCCACACACAGACTTTCCCGACCTCACTATTCGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAACGGCTAGCCCACACACAGACTTTCCCGACCTCACTATTCGTAA  500

seq1  ATTGCTAGGAAGAACTCCTCAAAACTGGGACTGTTTCCCGATCTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAGGAAGAACTCCTCAAAACTGGGACTGTTTCCCGATCTTGTTTT  550

seq1  ACATTCTTAAAGTAACCTCTAACGGTTTTAAATACAGTGCAGAAAAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTAAAGTAACCTCTAACGGTTTTAAATACAGTGCAGAAAAGAGT  600

seq1  ATCAAAATCCCAGCGACTGCTCCCAGAACAGAGCAAAAGTTGTTAGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCCCAGCGACTGCTCCCAGAACAGAGCAAAAGTTGTTAGGGTG  650

seq1  TTCCACCCAGGCAAGAAGCATCCTAGAAAGCCGGCTGCAGCTGCCGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCAGGCAAGAAGCATCCTAGAAAGCCGGCTGCAGCTGCCGGTGG  700

seq1  CTGGCGACCGACCCTGCACCCGGGGGACTCAGGGGCCACTTTGCAGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGACCGACCCTGCACCCGGGGGACTCAGGGGCCACTTTGCAGGGTC  750

seq1  TGCCGGGGCGGGACGAGGGCAGGAGGAGGAGAAAAGAAAGGGAGGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGGGCGGGACGAGGGCAGGAGGAGGAGAAAAGAAAGGGAGGAGAGG  800

seq1  ACGAGAGGGAAGACAGTCGGAGGAGAGGGAAAGAGAGATGACGAGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGGGAAGACAGTCGGAGGAGAGGGAAAGAGAGATGACGAGGAAGG  850

seq1  GAGGGACGGAGAAGCGGGGGAGGCGAGGGGAGGAGGCGGCGGCCGAGAAG  900
      ||||||| ||||||||||||| |||| ||||||||||||| ||| | || 
seq2  GAGGGAC-GAGAAGCGGGGGA-GCGA-GGGAGGAGGCGGC-GCCTA-AAT  895

seq1  AGAAGC-GAGGAGCGGGAGCAGAGGCGCGGGCGGTGGCCGCGCTGCATCC  949
      |||||| |||||||||||||||| || |||||||||||| | || | |||
seq2  AGAAGCTGAGGAGCGGGAGCAGA-GCCCGGGCGGTGGCC-CCCTTC-TCC  942

seq1  CACGGGAGAGCTCACCT  966
      ||||||||| |||||||
seq2  CACGGGAGATCTCACCT  959