BAC Information

Click to search

BAC

Clone NameB6Ng01-113B13
Chromosome3 (Build37)13 (Build37)
Map Location 45,387,104 - 45,387,63626,478,663 - 26,479,516
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113B13.bB6Ng01-113B13.g
ACCDH918980DH918981
length1,078854
definitionDH918980|Mus musculus domesticus DNA, BAC clone: B6Ng01-113B13, 5' end.DH918981|Mus musculus domesticus DNA, BAC clone: B6Ng01-113B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,387,104 - 45,387,636)(26,478,663 - 26,479,516)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagaccctttcccaatctcttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggtttttgttcctttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctttataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatgggggattgcatttgaatctgtagattgcttttggcaagatagccat
tttttacaatgttggtcctgccaatccatgagcatgggagatctttccat
cttctgagatcttctttaattttctttcttcagagacttgaagtttttat
catacagatctttcacttcctttagttagagtcatgccgagatattttat
attatttgtgactattgaaacgggtgttgtttccctaatttctttctcag
cctgtttattcattgattagagacagtgcattgacttgctggagttaatt
ttatatcatgctacttcactgaagtgtt
gaattctatgaactcctgttagctttgaatacttggtctttaggtcttta
gctgctttagaaggtgtgggaagctctatctaggaggtggggcttcactg
gaagaagtgaggcatctgcgaggagcaatgggttttacagtctgatccca
tggctgtctcaattatggtacactgaaatgtatccagctgcctcatttat
ttgccaccacatagcccctgtcatgaataaacagtgaccaaaataaatcc
ttccttccctcccatgttctatgaggtgtttcatggaagaaaaagtcaac
taatataacactgaatataaatacactatcaaatacttcaggttttaaat
ttcatttattaattttatatttgttggtggggtgcacatgccagggcaca
catatgaagaacagagaacaacttaaaggaagtagattccttcctaacct
gtgtgggttctagggaccaaaatcaggtcatgaggctttggaggaagtgc
ccttagttgttgagccatcaacctagatttgggggttttgagttgttgtt
gatttgttttgattgtttttgaacatgtcaaactagatcattaaatatac
ctgcctaacctaatatgcatcaaaatattgaactaccaaagctctcaatt
agtaattgattcacttcctcattaaagctctgtaaaatcaaaaggttgga
attcgaaccagtatctgtttaatattttttttaagtaacagaagactttg
caaatatgtaatcaacactaattttcttattttcaccaaattcagggaaa
ttaaagacaggaagataaagatgtattgaatccaaaaacctgccacctaa
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45387104_45387636
seq2: B6Ng01-113B13.b_592_1128 (reverse)

seq1  AACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAAT  50
      |||| |||| ||||||||||  |||||||||||||||| | |||||||||
seq2  AACA-CTTCAGTGAAGTAGCATGATATAAAATTAACTCCAGCAAGTCAAT  49

seq1  GGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA  100
      |  || ||||||  ||| ||||||||||||||||||||||||||||||||
seq2  GCACTGTCTCTAATCAATGAATAAACAGGCTGAGAAAGAAATTAGGGAAA  99

seq1  CAACACCCTTCTCAATAGCCACAAATAATATAAAATATCTCGGCGTGACT  150
      |||||||| | ||||||| ||||||||||||||||||||||||| |||||
seq2  CAACACCCGTTTCAATAGTCACAAATAATATAAAATATCTCGGCATGACT  149

seq1  CTAAC-GAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGA  199
      |||||  |||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAACTAAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGA  199

seq1  AGAAAG-AAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC  249

seq1  ATGGATTGGCAGGACCAACATTGT-AAAAATGGCTATCTTGCCAAAAGCA  297
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGGATTGGCAGGACCAACATTGTAAAAAATGGCTATCTTGCCAAAAGCA  299

seq1  ATCTACAGATTC-AATGCAAT-CCCCATTAAAATTCCAACTCAATTCTTC  345
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  ATCTACAGATTCAAATGCAATCCCCCATTAAAATTCCAACTCAATTCTTC  349

seq1  AACGAACTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACC  395
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACC  399

seq1  GAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACTTCTGGTGGAATCA  445
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCA  449

seq1  CCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCA  499

seq1  TGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAA  533
      ||||||||||||| |||||||||||| |||||||||||
seq2  TGGTACTGGTATAAAGACAGACAAGTAGACCAATGGAA  537

seq1: chr13_26478663_26479516
seq2: B6Ng01-113B13.g_70_923

seq1  GAATTCTATGAACTCCTGTTAGCTTTGAATACTTGGTCTTTAGGTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAACTCCTGTTAGCTTTGAATACTTGGTCTTTAGGTCTTTA  50

seq1  GCTGCTTTAGAAGGTGTGGGAAGCTCTATCTAGGAGGTGGGGCTTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTAGAAGGTGTGGGAAGCTCTATCTAGGAGGTGGGGCTTCACTG  100

seq1  GAAGAAGTGAGGCATCTGCGAGGAGCAATGGGTTTTACAGTCTGATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTGAGGCATCTGCGAGGAGCAATGGGTTTTACAGTCTGATCCCA  150

seq1  TGGCTGTCTCAATTATGGTACACTGAAATGTATCCAGCTGCCTCATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCTCAATTATGGTACACTGAAATGTATCCAGCTGCCTCATTTAT  200

seq1  TTGCCACCACATAGCCCCTGTCATGAATAAACAGTGACCAAAATAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCACATAGCCCCTGTCATGAATAAACAGTGACCAAAATAAATCC  250

seq1  TTCCTTCCCTCCCATGTTCTATGAGGTGTTTCATGGAAGAAAAAGTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCTCCCATGTTCTATGAGGTGTTTCATGGAAGAAAAAGTCAAC  300

seq1  TAATATAACACTGAATATAAATACACTATCAAATACTTCAGGTTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAACACTGAATATAAATACACTATCAAATACTTCAGGTTTTAAAT  350

seq1  TTCATTTATTAATTTTATATTTGTTGGTGGGGTGCACATGCCAGGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATTAATTTTATATTTGTTGGTGGGGTGCACATGCCAGGGCACA  400

seq1  CATATGAAGAACAGAGAACAACTTAAAGGAAGTAGATTCCTTCCTAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAAGAACAGAGAACAACTTAAAGGAAGTAGATTCCTTCCTAACCT  450

seq1  GTGTGGGTTCTAGGGACCAAAATCAGGTCATGAGGCTTTGGAGGAAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTTCTAGGGACCAAAATCAGGTCATGAGGCTTTGGAGGAAGTGC  500

seq1  CCTTAGTTGTTGAGCCATCAACCTAGATTTGGGGGTTTTGAGTTGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTGTTGAGCCATCAACCTAGATTTGGGGGTTTTGAGTTGTTGTT  550

seq1  GATTTGTTTTGATTGTTTTTGAACATGTCAAACTAGATCATTAAATATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTTTGATTGTTTTTGAACATGTCAAACTAGATCATTAAATATAC  600

seq1  CTGCCTAACCTAATATGCATCAAAATATTGAACTACCAAAGCTCTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAACCTAATATGCATCAAAATATTGAACTACCAAAGCTCTCAATT  650

seq1  AGTAATTGATTCACTTCCTCATTAAAGCTCTGTAAAATCAAAAGGTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTGATTCACTTCCTCATTAAAGCTCTGTAAAATCAAAAGGTTGGA  700

seq1  ATTCGAACCAGTATCTGTTTAATA-TTTTTTTAAGTAACAGAAGACTTTT  749
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  ATTCGAACCAGTATCTGTTTAATATTTTTTTTAAGTAACAGAAGAC-TTT  749

seq1  GCAAATATGTAATCAACACTAATTTTCTTATTTTCACCAAATTCAGGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATGTAATCAACACTAATTTTCTTATTTTCACCAAATTCAGGGAA  799

seq1  ATAAAAGACAGGAAGATAAAAGATGTATTGAATCC-AAAACCTGCCACCT  848
      || |||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  ATTAAAGACAGGAAGAT-AAAGATGTATTGAATCCAAAAACCTGCCACCT  848

seq1  AATTTT  854
      ||||||
seq2  AATTTT  854