BAC Information

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BAC

Clone NameB6Ng01-113E06
Chromosome13 (Build37)
Map Location 19,871,658 - 19,959,802
singlet/doubletdoublet
Overlap geneGpr141
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik
Downstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386, Aoah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113E06.bB6Ng01-113E06.g
ACCDH919104DH919105
length1,1291,095
definitionDH919104|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E06, 5' end.DH919105|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,958,665 - 19,959,802)(19,871,658 - 19,872,762)
sequence
gaattcatagctagagttctgctttcacacacacatgactattttataaa
accgtctaaggccatggctagctaaatagcagtgtaaggaaagtgagaaa
ctggagcagagtgtgtttgtataatgtcccaagtagagaataattacata
ataattatgatgatacacgtaacaaaaatgcactaactactaatataatg
cttacagttggctgagcctgtgcagtttgcattcattatcttatttaatg
aagtgattccttgaggagggtacagttgtgattgtttccatcgccctgtg
gattccaaaataagtgggtgctcaatgccctcatgtgacatatatttgca
tttgacctttccacatcctactgcaaaatttaaatcacttgtaaatcact
tgtagtgcctaataccatgccagcaacacgtacataatgatatattgtat
tgtttagaggacaatgacgagaagtttgttcatgtcattttagaaaggtg
ttatcagtttgcatttgagagaatccacagttggtacagaaaccatcatt
acagagggacaattgtatcatccagtagaagctttagctttagttaagca
ggtcaactcagagcagaaacaaaactaacaagtgacaactctgtatatct
agaaggacaattagactcagaggtactttatcaagaaagctgtgatatta
tccattagcatttcatattagaaatgccaaaaactggctaaagagtcaga
agattcctgcctggaagcaagaataaaatcatgatattaattcttaggtt
gttttggcgctttcccttatttcttggaacatggcttcagtctactatga
aatccattgtccccagaaaattctgaaggaatgccatagaggcatctcat
ctgtataatgataatgacattacaactgtaggctgatgtgttggcactgt
gcacaaaggttcactggcttctcacattttttgatgagcttcaaggtctc
ataatatgatgccagttctattttgctctgccaccaaaagtgcaccaaat
tacaggtggagtcagatcgtacggatgtttaaacataaagagggacatgg
ctagtggcattctaggtatatttcactta
gaattctagagaaccagctagtccctgtctttcctctgcttatatctcca
tgaccagttgctaagattcttgagggcaattcatttgcatatgaaacaga
agacttagagagatcatttaaatgggcctactcagttctctaagactgat
aaatgctggaaaagaagctcatcctgtcgcaatgccagggaggcaacact
gtattctaaacttaattaccaaattttaatttgtccctgaaaaaaaaatc
ccaagctcttctaaaatatctttttaactcttctgaaccttatatctttc
acctttgaaatggaaaatcatgctgagaatttcttagggtggggactgtt
cacattctctgccccagatgactacacccaaggcatagaacacctagcca
tcaaagggcacctggcgtggcatttgtaagtgctttctgtcctgtctcga
gcaaagcccaggagagtagccagttgtggtcctcttctcaaaggtcttga
agtgccagacttgagtcatactgtgcctttcctctgactgttttctgcgt
agctccaggttcttctcccacctccttctgcatcccaagccttcctgaag
gccacccaactctcctcactccacactcccttctcatacagcacagctgt
agtaacagttagatatgccttaatgaatactgatctccacaagagcatcc
tctcctcagattcttgctgttaccaggctctgctgttctttagggtgtgg
atgcattttctgcacttcatgctggtctccatccttctttgacttagacc
taaagagcttctgtaacattggaaatctacctttcacttttatcccctca
acttttagtcccaaattttattcaccatctcattcatcatctgatagaaa
atttttttcacaaaagtccccactggaagtgtggtgcaaatgcctcagtg
ccccatctatcttcagtcctctatctggctgctttcagctatccctgtgc
tgcccactcttctccccagcatggctgcgtgtcgacctctgaacttcctt
aagatgaaacattattcctcctggaaactgacgcttgatcacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19958665_19959802
seq2: B6Ng01-113E06.b_47_1175 (reverse)

seq1  TAAGTGAAATTTAACCTAGAATGCCACTAGCCATGTCCCTCTCTATG-TT  49
      |||||||||| | ||||||||||||||||||||||||||||| |||| ||
seq2  TAAGTGAAATAT-ACCTAGAATGCCACTAGCCATGTCCCTCTTTATGTTT  49

seq1  ATACATACAGTAACGATCTGACTCCAACCCTGTAATTTGGTGCACTTTTG  99
      | |||| | || ||||||||||||||  ||||||||||||||||||||| 
seq2  AAACAT-CCGT-ACGATCTGACTCCA--CCTGTAATTTGGTGCACTTTT-  94

seq1  GGTGGCAGGAGCAAAATAGAACTGGCATCATAATATGGAGACCTTGAAGC  149
      ||||||| |||||||||||||||||||||||| ||| |||||||||||||
seq2  GGTGGCA-GAGCAAAATAGAACTGGCATCATATTAT-GAGACCTTGAAGC  142

seq1  TCATCAAAAAATGGTGAGAAGCCAGTGAACCTTTGTGCACAGTGCCAACA  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATCAAAAAAT-GTGAGAAGCCAGTGAACCTTTGTGCACAGTGCCAACA  191

seq1  CATTCAGCCTACAGTTGTAATGTCATTATCATTATACAGATGAGATGCCT  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TCAGCCTACAGTTGTAATGTCATTATCATTATACAGATGAGATGCCT  240

seq1  CTATGGCATTCCTTCAGAATTTTCTGGGGACAATGGATTTCATAGTAGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCATTCCTTCAGAATTTTCTGGGGACAATGGATTTCATAGTAGAC  290

seq1  TGAAGCCATGTTCCAAGAAATAAGGGAAAGCGCCAAAACAACCTAAGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCATGTTCCAAGAAATAAGGGAAAGCGCCAAAACAACCTAAGAAT  340

seq1  TAATATCATGATTTTATTCTTGCTTCCAGGCAGGAATCTTCTGACTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATGATTTTATTCTTGCTTCCAGGCAGGAATCTTCTGACTCTTT  390

seq1  AGCCAGTTTTTGGCATTTCTAATATGAAATGCTAATGGATAATATCACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTTTTGGCATTTCTAATATGAAATGCTAATGGATAATATCACAG  440

seq1  CTTTCTTGATAAAGTACCTCTGAGTCTAATTGTCCTTCTAGATATACAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGATAAAGTACCTCTGAGTCTAATTGTCCTTCTAGATATACAGA  490

seq1  GTTGTCACTTGTTAGTTTTGTTTCTGCTCTGAGTTGACCTGCTTAACTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCACTTGTTAGTTTTGTTTCTGCTCTGAGTTGACCTGCTTAACTAA  540

seq1  AGCTAAAGCTTCTACTGGATGATACAATTGTCCCTCTGTAATGATGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGCTTCTACTGGATGATACAATTGTCCCTCTGTAATGATGGTTT  590

seq1  CTGTACCAACTGTGGATTCTCTCAAATGCAAACTGATAACACCTTTCTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCAACTGTGGATTCTCTCAAATGCAAACTGATAACACCTTTCTAA  640

seq1  AATGACATGAACAAACTTCTCGTCATTGTCCTCTAAACAATACAATATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATGAACAAACTTCTCGTCATTGTCCTCTAAACAATACAATATAT  690

seq1  CATTATGTACGTGTTGCTGGCATGGTATTAGGCACTACAAGTGATTTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGTACGTGTTGCTGGCATGGTATTAGGCACTACAAGTGATTTACA  740

seq1  AGTGATTTAAATTTTGCAGTAGGATGTGGAAAGGTCAAATGCAAATATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTAAATTTTGCAGTAGGATGTGGAAAGGTCAAATGCAAATATAT  790

seq1  GTCACATGAGGGCATTGAGCACCCACTTATTTTGGAATCCACAGGGCGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATGAGGGCATTGAGCACCCACTTATTTTGGAATCCACAGGGCGAT  840

seq1  GGAAACAATCACAACTGTACCCTCCTCAAGGAATCACTTCATTAAATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAATCACAACTGTACCCTCCTCAAGGAATCACTTCATTAAATAAG  890

seq1  ATAATGAATGCAAACTGCACAGGCTCAGCCAACTGTAAGCATTATATTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAATGCAAACTGCACAGGCTCAGCCAACTGTAAGCATTATATTAG  940

seq1  TAGTTAGTGCATTTTTGTTACGTGTATCATCATAATTATTATGTAATTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTGCATTTTTGTTACGTGTATCATCATAATTATTATGTAATTAT  990

seq1  TCTCTACTTGGGACATTATACAAACACACTCTGCTCCAGTTTCTCACTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTGGGACATTATACAAACACACTCTGCTCCAGTTTCTCACTTT  1040

seq1  CCTTACACTGCTATTTAGCTAGCCATGGCCTTAGACGGTTTTATAAAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACACTGCTATTTAGCTAGCCATGGCCTTAGACGGTTTTATAAAATA  1090

seq1  GTCATGTGTGTGTGAAAGCAGAACTCTAGCTATGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGTGTGTGAAAGCAGAACTCTAGCTATGAATTC  1129

seq1: chr13_19871658_19872762
seq2: B6Ng01-113E06.g_68_1162

seq1  GAATTCTAGAGAACCAGCTAGTCCCTGTCTTTCCTCTGCTTATATCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGAACCAGCTAGTCCCTGTCTTTCCTCTGCTTATATCTCCA  50

seq1  TGACCAGTTGCTAAGATTCTTGAGGGCAATTCATTTGCATATGAAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTTGCTAAGATTCTTGAGGGCAATTCATTTGCATATGAAACAGA  100

seq1  AGACTTAGAGAGATCATTTAAATGGGCCTACTCAGTTCTCTAAGACTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGAGAGATCATTTAAATGGGCCTACTCAGTTCTCTAAGACTGAT  150

seq1  AAATGCTGGAAAAGAAGCTCATCCTGTCGCAATGCCAGGGAGGCAACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGAAAAGAAGCTCATCCTGTCGCAATGCCAGGGAGGCAACACT  200

seq1  GTATTCTAAACTTAATTACCAAATTTTAATTTGTCCCTGAAAAAAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTAAACTTAATTACCAAATTTTAATTTGTCCCTGAAAAAAAAATC  250

seq1  CCAAGCTCTTCTAAAATATCTTTTTAACTCTTCTGAACCTTATATCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTCTTCTAAAATATCTTTTTAACTCTTCTGAACCTTATATCTTTC  300

seq1  ACCTTTGAAATGGAAAATCATGCTGAGAATTTCTTAGGGTGGGGACTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAAATGGAAAATCATGCTGAGAATTTCTTAGGGTGGGGACTGTT  350

seq1  CACATTCTCTGCCCCAGATGACTACACCCAAGGCATAGAACACCTAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTCTGCCCCAGATGACTACACCCAAGGCATAGAACACCTAGCCA  400

seq1  TCAAAGGGCACCTGGCGTGGCATTTGTAAGTGCTTTCTGTCCTGTCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGCACCTGGCGTGGCATTTGTAAGTGCTTTCTGTCCTGTCTCGA  450

seq1  GCAAAGCCCAGGAGAGTAGCCAGTTGTGGTCCTCTTCTCAAAGGTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCCAGGAGAGTAGCCAGTTGTGGTCCTCTTCTCAAAGGTCTTGA  500

seq1  AGTGCCAGACTTGAGTCATACTGTGCCTTTCCTCTGACTGTTTTCTGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGACTTGAGTCATACTGTGCCTTTCCTCTGACTGTTTTCTGCGT  550

seq1  AGCTCCAGGTTCTTCTCCCACCTCCTTCTGCATCCCAAGCCTTCCTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGTTCTTCTCCCACCTCCTTCTGCATCCCAAGCCTTCCTGAAG  600

seq1  GCCACCCAACTCTCCTCACTCCACACTCCCTTCTCATACAGCACAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCAACTCTCCTCACTCCACACTCCCTTCTCATACAGCACAGCTGT  650

seq1  AGTAACAGTTAGATATGCCTTAATGAATACTGATCTCCACAAGAGCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGTTAGATATGCCTTAATGAATACTGATCTCCACAAGAGCATCC  700

seq1  TCTCCTCAGATTCTTGCTGTTACCAGGCTCTGCTGTTCTTTAGGGTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGATTCTTGCTGTTACCAGGCTCTGCTGTTCTTTAGGGTGTGG  750

seq1  ATGCATTTTCTGCACTTCATGCTGGTCTCCATCCTTCTTTGACTTAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTCTGCACTTCATGCTGGTCTCCATCCTTCTTTGACTTAGACC  800

seq1  TAAAGAGCTTCTGTAACATTGGAAATCTACCTTTCACTTTTATCCCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCTTCTGTAACATTGGAAATCTACCTTTCACTTTTATCCCCTCA  850

seq1  ACTTTTAGTCCCAAAATTTTATTCACCATCTCATTCATCATCTGATAGAA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGTCCC-AAATTTTATTCACCATCTCATTCATCATCTGATAGAA  899

seq1  AATTTTTTTCACAAAAGTCCCCACTGGAAGGTGTGGTGCAAATTGCCTCA  950
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  AATTTTTTTCACAAAAGTCCCCACTGGAA-GTGTGGTGCAAA-TGCCTCA  947

seq1  GTGCCCCATCTAATCTTCAGGTTCTCTATCTGGCTTGCTTTCAGCTATCC  1000
      ||||||||||| ||||||| || ||||||||||| |||||||||||||||
seq2  GTGCCCCATCT-ATCTTCA-GTCCTCTATCTGGC-TGCTTTCAGCTATCC  994

seq1  CTGTGCTGCACACTC-TCT-CTCAGCATGGCTGCAGTGGTCGACCTCTG-  1047
      ||||||||| ||||| ||| | |||||||||||| || ||||||||||| 
seq2  CTGTGCTGCCCACTCTTCTCCCCAGCATGGCTGC-GT-GTCGACCTCTGA  1042

seq1  ACTTCTCTAAGATGGAACATTTAATCCCTTCCTGGAAAACTGACGCATGA  1097
      |||||  ||||||| ||||||  || || |||||| |||||||||| |||
seq2  ACTTCCTTAAGATGAAACATT--ATTCC-TCCTGG-AAACTGACGCTTGA  1088

seq1  TTCACAGA  1105
       |||||||
seq2  -TCACAGA  1095