BAC Information

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BAC

Clone NameB6Ng01-113F20
Chromosome13 (Build37)
Map Location 12,793,360 - 12,882,798
singlet/doubletdoublet
Overlap geneLOC100039744, EG630757
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507
Downstream genePrl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113F20.bB6Ng01-113F20.g
ACCDH919179DH919180
length1,097601
definitionDH919179|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F20, 5' end.DH919180|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,793,360 - 12,794,446)(12,882,198 - 12,882,798)
sequence
gaattcaactttaacttcatttcttctcggtttcattctttctttcatga
caatgtctattaatttcttctctgtctcaacttcttcccttctcacgggt
cacccccagtccccaacaggcttggtccagtggtttctctctatattttc
acttaaggtgccaaactaatgatcaacagctgactggaaatattacattg
cttaaaagttatctttattctgccgggcgtggtggcgcacacctttaatc
ccagcactcgggaggcagaggcagtcggatttctgattcgaggccaacct
gatctatagagtgagttccaagacagccagggctatacagagaaaccttg
tcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggactgtccaggat
tctctgagtttttaggggagctcaaattcttggatttgttattcagcttt
gcttggaccatcgctcccaacttctctgcacggagttgataatcgggtcc
ctggaacccgccctgctcccaccttccacctcccaggacctcctttctct
agcctctgatgaaactgcattacttccagaaaacccgctttgattcccag
cacgccacacagaagtttgctctggccaattcctccattcccaaactgtt
tttattgcttggactccaagcaaatctgactttgaattgtgtcccacact
ttgagactttgtctggcaggtgtgggctcctgtttcctgcggaatcctat
aacttaaggaacccagaatcaggaactggaaaaatgctcacttagtgatt
ggatgagtaaaggcacacacatttgtcaggctttttgcgcatttcgaagc
atccgctcagtctcctttctgggtggggttctgtcccgtccctggcccca
aagtggtttgtttccttggttgcccgctctccaagaaccttgcctaactg
cagaatgctgttgcaaagttccttctttcctggatagggagccacgtcgg
gttggaatccggaatggctgggaaccacgcccactgcttgcgcgggggaa
acctcggttcgcccctcttccttctgcttcgctgccaattggataga
gaattccaggacagccagggctatacagagaaacactgtctcaaaaacaa
aaacaaaacaaaacaaaacaaacaaacaaacaaaaaaaagaactggtgtt
ttcaggaaatttcctggtgataaaagttgaagtatttgtgataattaatg
aaagacaaagaaagacagacactactgatcacacaatttgcagagtactg
aaagtcaatatgattatgattgttatgcacaatccccatatatttgaaat
tttttaaaatgtttaaaacccctcagaacacaataattgaatgggtctta
atttctttaaaaatttcttcaaacatagtcatctaaattcttatcttcat
tgtaccatctttgacatataccacatgttctttaccttgtgtataccaag
acttctttggactttcctcaatttcttctcatattcacattatttagtgt
taatattcccttctcatcctcatattgggtgaaagcacatggtatataat
gaaatataaagagtctcttccatttgtctaagaatttcataaattcgttg
tttttaatagatgcgtagtacaccattgtgtaattttctgtatccattcc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12793360_12794446
seq2: B6Ng01-113F20.b_49_1145

seq1  GAATTCAACTTTAACTTCATTTCTTCTCGGTTTCATTCTTTCTTTCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTAACTTCATTTCTTCTCGGTTTCATTCTTTCTTTCATGA  50

seq1  CAATGTCTATTAATTTCTTCTCTGTCTCAACTTCTTCCCTTCTCACGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTATTAATTTCTTCTCTGTCTCAACTTCTTCCCTTCTCACGGGT  100

seq1  CACCCCCAGTCCCCAACAGGCTTGGTCCAGTGGTTTCTCTCTATATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAGTCCCCAACAGGCTTGGTCCAGTGGTTTCTCTCTATATTTTC  150

seq1  ACTTAAGGTGCCAAACTAATGATCAACAGCTGACTGGAAATATTACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGTGCCAAACTAATGATCAACAGCTGACTGGAAATATTACATTG  200

seq1  CTTAAAAGTTATCTTTATTCTGCCGGGCGTGGTGGCGCACACCTTTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGTTATCTTTATTCTGCCGGGCGTGGTGGCGCACACCTTTAATC  250

seq1  CCAGCACTCGGGAGGCAGAGGCAGTCGGATTTCTGATTCGAGGCCAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGTCGGATTTCTGATTCGAGGCCAACCT  300

seq1  GATCTATAGAGTGAGTTCCAAGACAGCCAGGGCTATACAGAGAAACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATAGAGTGAGTTCCAAGACAGCCAGGGCTATACAGAGAAACCTTG  350

seq1  TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGACTGTCCAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGACTGTCCAGGAT  400

seq1  TCTCTGAGTTTTTAGGGGAGCTCAGATTCTTGGATTTGTTATTCAGCTTT  450
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTCTGAGTTTTTAGGGGAGCTCAAATTCTTGGATTTGTTATTCAGCTTT  450

seq1  GCTTGGACCATCGCTCCCAACTTCTCTGCACGGAGTTGATAATCGGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACCATCGCTCCCAACTTCTCTGCACGGAGTTGATAATCGGGTCC  500

seq1  CTGGAACCCGCCCTGCTCCCACCTTCCACCTCCCAGGACCTCCTTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCCGCCCTGCTCCCACCTTCCACCTCCCAGGACCTCCTTTCTCT  550

seq1  AGCCTCTGATGAAACTGCATTACTTCCAGAAAACCCGCTTTGATTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGATGAAACTGCATTACTTCCAGAAAACCCGCTTTGATTCCCAG  600

seq1  CACGCCACACAGAAGTTTGCTCTGGCCAATTCCTCCATTCCCAAACTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCACACAGAAGTTTGCTCTGGCCAATTCCTCCATTCCCAAACTGTT  650

seq1  TTTATTGCTTGGACTCCAAGCAAATCTGACTTTGAATTGTGTCCCACAC-  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTATTGCTTGGACTCCAAGCAAATCTGACTTTGAATTGTGTCCCACACT  700

seq1  TTGAGACTTTGTCTGGCAGGTGTGGGCTCCTGTTTCCTGCGGAATCCTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTTTGTCTGGCAGGTGTGGGCTCCTGTTTCCTGCGGAATCCTAT  750

seq1  AACTTAAGGAACCCAGAATCAGGAACTGGAAAAATGCTCACTTAGTGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGGAACCCAGAATCAGGAACTGGAAAAATGCTCACTTAGTGATT  800

seq1  GGATGAGTAAAGGCACACACATTTGTCAGGCTTTTTGCGCATTTCG-AGC  848
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGATGAGTAAAGGCACACACATTTGTCAGGCTTTTTGCGCATTTCGAAGC  850

seq1  ATCCGCTCAGTCTCCTTTCTAGGGTGGGTTCTGTCCCGTCCCTGGCCCCA  898
      |||||||||||||||||||| ||  |||||||||||||||||||||||||
seq2  ATCCGCTCAGTCTCCTTTCTGGGTGGGGTTCTGTCCCGTCCCTGGCCCCA  900

seq1  AAGT-GTTTGTTTCC-TGGTTGCCCGCTCTCCAGGAA-CTTGCCTAACTG  945
      |||| |||||||||| ||||||||||||||||| ||| ||||||||||||
seq2  AAGTGGTTTGTTTCCTTGGTTGCCCGCTCTCCAAGAACCTTGCCTAACTG  950

seq1  CAGAATGCTGTTGCAAAGTTCCTTCTTT-CTGGATAGGAGCCCACCGTCG  994
      |||||||||||||||||||||||||||| |||||||||   ||| |||||
seq2  CAGAATGCTGTTGCAAAGTTCCTTCTTTCCTGGATAGGGAGCCA-CGTCG  999

seq1  GGTTGG-ATCCGGAAT-GCTGGGAACCAACGCCCACTGC-TGCGCGGGGG  1041
      |||||| ||||||||| |||||||||| ||||||||||| ||||||||||
seq2  GGTTGGAATCCGGAATGGCTGGGAACC-ACGCCCACTGCTTGCGCGGGGG  1048

seq1  -AACCTCGGTGTCGCCCCTCTTCCTCCTGC-TCGCTGCC-ATTGG-TAGA  1087
       ||||||||| |||||||||||||| |||| |||||||| ||||| ||||
seq2  AAACCTCGGT-TCGCCCCTCTTCCTTCTGCTTCGCTGCCAATTGGATAGA  1097

seq1: chr13_12882198_12882798
seq2: B6Ng01-113F20.g_70_670 (reverse)

seq1  AGGAATGGATACAGAAAATTACACAATGGTGTACTACGCATCTATTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGATACAGAAAATTACACAATGGTGTACTACGCATCTATTAAAA  50

seq1  ACAACGAATTTATGAAATTCTTAGACAAATGGAAGAGACTCTTTATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGAATTTATGAAATTCTTAGACAAATGGAAGAGACTCTTTATATTT  100

seq1  CATTATATACCATGTGCTTTCACCCAATATGAGGATGAGAAGGGAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATACCATGTGCTTTCACCCAATATGAGGATGAGAAGGGAATATT  150

seq1  AACACTAAATAATGTGAATATGAGAAGAAATTGAGGAAAGTCCAAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAATAATGTGAATATGAGAAGAAATTGAGGAAAGTCCAAAGAAG  200

seq1  TCTTGGTATACACAAGGTAAAGAACATGTGGTATATGTCAAAGATGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTATACACAAGGTAAAGAACATGTGGTATATGTCAAAGATGGTAC  250

seq1  AATGAAGATAAGAATTTAGATGACTATGTTTGAAGAAATTTTTAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATAAGAATTTAGATGACTATGTTTGAAGAAATTTTTAAAGAAA  300

seq1  TTAAGACCCATTCAATTATTGTGTTCTGAGGGGTTTTAAACATTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACCCATTCAATTATTGTGTTCTGAGGGGTTTTAAACATTTTAAAA  350

seq1  AATTTCAAATATATGGGGATTGTGCATAACAATCATAATCATATTGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAATATATGGGGATTGTGCATAACAATCATAATCATATTGACTT  400

seq1  TCAGTACTCTGCAAATTGTGTGATCAGTAGTGTCTGTCTTTCTTTGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTCTGCAAATTGTGTGATCAGTAGTGTCTGTCTTTCTTTGTCTT  450

seq1  TCATTAATTATCACAAATACTTCAACTTTTATCACCAGGAAATTTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATTATCACAAATACTTCAACTTTTATCACCAGGAAATTTCCTGA  500

seq1  AAACACCAGTTCTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAGTTCTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTT  550

seq1  TTTGTTTTTGAGACAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGAGACAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATT  600

seq1  C  601
      |
seq2  C  601