BAC Information

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BAC

Clone NameB6Ng01-113K20
Chromosome13 (Build37)
Map Location 40,524,381 - 40,655,820
singlet/doubletdoublet
Overlap geneLOC666894
Upstream geneLOC100041779, LOC382747, A230103O09Rik, Ofcc1
Downstream geneLOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K20.bB6Ng01-113K20.g
ACCDH919410DH919411
length1,0851,077
definitionDH919410|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K20, 5' end.DH919411|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,654,770 - 40,655,820)(40,524,381 - 40,525,459)
sequence
gaattcctgcaatggctgcacacctgtgcttttacaggcactggcgtctg
agtgaaccagaatgttgttcaggtgagtgccacactcagggctaagaacc
agtactccacccaggatggtgaggactgaaattctgtccttcatcccctt
tctctcccttaaggaacatcatgagtttgggagaaatgctttaggttcaa
caatcaatttaagaaaggttgattgcagccatatctataaagggctatgg
tacttctgtcacaaaggggcaataatatcctgagaaggaagaacaaacct
ggtgaaaagaaaattggatggccgactcaaacgggtttaaagtggctggt
cttacacagtcaagtaagcagcctcctttgagcttctctccgggggcagc
tgagttataaacagctggaagtgggggaatgcagtagcttgggtatgtat
atcttccaaaggcacatatattagagacttggtttccaggctactgttgg
aaaatcatggaatcttcaagaggtgggctttcgtgggaggcagggcattg
agaacatacccttgagggagatttttgtgagcctgtctccttcctgtctt
tgcttcttggtcttcatgagatgatgtaggcctcctatgtcacatgctcc
caccatgacctgctggcctgccacatgcccaaggccacagagatgagcaa
tatggactaaatcctccaactcaatgaaccagaacaaaagtttgctctct
gcaagttgagactctcagctattctcgatcacagtattgtgaccttatag
aaaagatcatgtcagttcctctggcctgtgagaatagtgggtttgaagct
acttctggtgaggcgtaacagagctggaaggagacagaccattttgtact
cttcactactgcattgtggatgccctgtgtttgctagagcaagatgagca
gttgaggatttgtcttgcattcatagttaaggaatgtttgctgtgtgcac
ggtagctttcttcttttccgaatgtttgaagaagcatcttttccttattg
cgctccttccataaatttcttccttctttcctgaa
gaattcatacacaccgttttacacacccgtgatcttatctccccaaactg
tcctgcgtatgacttattctttctacttttcctttcacctcccttccttt
ctcgcctttgaacttctacctacttcccctaaatccttgatttccctccc
agcctgaagcccttctacttggggctcagaggagggaaggtgtctaaaag
aaagcatcactgctctttgcacccagaatagacacttgccagctatgaac
actgtccagtcgagatgtctggctggagccaatagctatggttctgagac
ctctgacatagcttgtcatattgggacttctcagcacaccagcctcttaa
ctgcctgagcacacctggcaggtgtgttaaactattggaagaatgtcatt
tccttactcagaagggagccagcccctacttcctctctcaatttcaaaca
gcctcattatagttggggaagccaatgcataatttttaaaagtttatcca
agcacataactccagataagatgtgaaatgtagaacagggcgctgatgta
ctcttcgtacattgcatagaaacagactctgcatcaacagtaacagtttc
ctcccgggaaatgcatttggcaggtcccagggtgactaaagagagcatgc
agagggctggaaacaactctgtccctggtcaggtttgtgctcactggtcc
tggagatttaggggtgcattcagaggagaggagaggaaaggagagacact
tgtcaaactcaggagtgctggccgctaaacgatgtttcttagaaatgctt
tggacacattgctaaaagaaaaaacaaaatctctgtgctgctcagatata
cggaatgagcattttattgtcttggttccatgtagtctgggtagtcgtgt
ccaggagaaatttcgtctattagtgagttcgacagctaaaattgggcgga
tatagagcaacatggttgggagagacagggtctatcaagcagcccccttc
tggtatctgctatggtgccaggactcatggggcgcctcttccctattatg
taaggtgtcagggtacacaaccaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40654770_40655820
seq2: B6Ng01-113K20.b_50_1105 (reverse)

seq1  GGAGAGCAATAAGGAAAAGATGCT--CTCAAACATCCGAAAAAG-AGAAA  47
      |||| |||||||||||||||||||   |||||||| || ||||| |||||
seq2  GGAGCGCAATAAGGAAAAGATGCTTCTTCAAACATTCGGAAAAGAAGAAA  50

seq1  GCTAACCGTGCACACAGC-AACA-TCCCTAACTATGAATGCCAAGACAAA  95
      ||| |||||||||||||| |||| ||| |||||||||||| |||||||||
seq2  GCT-ACCGTGCACACAGCAAACATTCCTTAACTATGAATG-CAAGACAAA  98

seq1  TCCTCAACCTGCTCTTCTTGCTCTAGCAAACACAGGGCATCCACAATGCA  145
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTCAA-CTGCTCATCTTGCTCTAGCAAACACAGGGCATCCACAATGCA  147

seq1  GTAGTGAAGAGTACAAAATGGTCTGTCTCC-TCCAGCTCTGTTACGCCTC  194
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAGTGAAGAGTACAAAATGGTCTGTCTCCTTCCAGCTCTGTTACGCCTC  197

seq1  ACCAGAAGTAGCTTC-AATCCACTATTCTCACAGGCCAGAGGAACTGACA  243
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  ACCAGAAGTAGCTTCAAACCCACTATTCTCACAGGCCAGAGGAACTGACA  247

seq1  TGATCTTTTCTAT-AGGTCACAATACTGTGATCGAGAATAGCTGAGAGTC  292
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTTCTATAAGGTCACAATACTGTGATCGAGAATAGCTGAGAGTC  297

seq1  TCAACTTGCAGAGAGCAAACTTTTGTTCTGGTTCATTGAGTTGGAGGATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGCAGAGAGCAAACTTTTGTTCTGGTTCATTGAGTTGGAGGATT  347

seq1  TAGTCCATATTGCTCATCTCTGTGGCCTTGGGCATGTGGCAGGCCAGCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATATTGCTCATCTCTGTGGCCTTGGGCATGTGGCAGGCCAGCAG  397

seq1  GTCATGGTGGGAGCATGTGACATAGGAGGCCTACATCATCTCATGAAGAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGGGAGCATGTGACATAGGAGGCCTACATCATCTCATGAAGAC  447

seq1  CAAGAAGCAAAGACAGGAAGGAGACAGGCTCACAAAAATCTCCCTCAAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCAAAGACAGGAAGGAGACAGGCTCACAAAAATCTCCCTCAAGG  497

seq1  GTATGTTCTCAATGCCCTGCCTCCCACGAAAGCCCACCTCTTGAAGATTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTCTCAATGCCCTGCCTCCCACGAAAGCCCACCTCTTGAAGATTC  547

seq1  CATGATTTTCCAACAGTAGCCTGGAAACCAAGTCTCTAATATATGTGCCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTTCCAACAGTAGCCTGGAAACCAAGTCTCTAATATATGTGCCT  597

seq1  TTGGAAGATATACATACCCAAGCTACTGCATTCCCCCACTTCCAGCTGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGATATACATACCCAAGCTACTGCATTCCCCCACTTCCAGCTGTT  647

seq1  TATAACTCAGCTGCCCCCGGAGAGAAGCTCAAAGGAGGCTGCTTACTTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCAGCTGCCCCCGGAGAGAAGCTCAAAGGAGGCTGCTTACTTGA  697

seq1  CTGTGTAAGACCAGCCACTTTAAACCCGTTTGAGTCGGCCATCCAATTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAGACCAGCCACTTTAAACCCGTTTGAGTCGGCCATCCAATTTT  747

seq1  CTTTTCACCAGGTTTGTTCTTCCTTCTCAGGATATTATTGCCCCTTTGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACCAGGTTTGTTCTTCCTTCTCAGGATATTATTGCCCCTTTGTG  797

seq1  ACAGAAGTACCATAGCCCTTTATAGATATGGCTGCAATCAACCTTTCTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTACCATAGCCCTTTATAGATATGGCTGCAATCAACCTTTCTTA  847

seq1  AATTGATTGTTGAACCTAAAGCATTTCTCCCAAACTCATGATGTTCCTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTGTTGAACCTAAAGCATTTCTCCCAAACTCATGATGTTCCTTA  897

seq1  AGGGAGAGAAAGGGGATGAAGGACAGAATTTCAGTCCTCACCATCCTGGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAAAGGGGATGAAGGACAGAATTTCAGTCCTCACCATCCTGGG  947

seq1  TGGAGTACTGGTTCTTAGCCCTGAGTGTGGCACTCACCTGAACAACATTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACTGGTTCTTAGCCCTGAGTGTGGCACTCACCTGAACAACATTC  997

seq1  TGGTTCACTCAGACGCCAGTGCCTGTAAAAGCACAGGTGTGCAGCCATTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACTCAGACGCCAGTGCCTGTAAAAGCACAGGTGTGCAGCCATTG  1047

seq1  CAGGAATTC  1051
      |||||||||
seq2  CAGGAATTC  1056

seq1: chr13_40524381_40525459
seq2: B6Ng01-113K20.g_72_1148

seq1  GAATTCATACACACCGTTTTACACACCCGTGATCTTATCTCCCCAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACACACCGTTTTACACACCCGTGATCTTATCTCCCCAAACTG  50

seq1  TCCTGCGTATGACTTATTCTTTCTACTTTTCCTTTCACCTCCCTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCGTATGACTTATTCTTTCTACTTTTCCTTTCACCTCCCTTCCTTT  100

seq1  CTCGCCTTTGAACTTCTACCTACTTCCCCTAAATCCTTGATTTCCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCTTTGAACTTCTACCTACTTCCCCTAAATCCTTGATTTCCCTCCC  150

seq1  AGCCTGAAGCCCTTCTACTTGGGGCTCAGAGGAGGGAAGGTGTCTAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAGCCCTTCTACTTGGGGCTCAGAGGAGGGAAGGTGTCTAAAAG  200

seq1  AAAGCATCACTGCTCTTTGCACCCAGAATAGACACTTGCCAGCTATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCACTGCTCTTTGCACCCAGAATAGACACTTGCCAGCTATGAAC  250

seq1  ACTGTCCAGTCGAGATGTCTGGCTGGAGCCAATAGCTATGGTTCTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAGTCGAGATGTCTGGCTGGAGCCAATAGCTATGGTTCTGAGAC  300

seq1  CTCTGACATAGCTTGTCATATTGGGACTTCTCAGCACACCAGCCTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACATAGCTTGTCATATTGGGACTTCTCAGCACACCAGCCTCTTAA  350

seq1  CTGCCTGAGCACACCTGGCAGGTGTGTTAAACTATTGGAAGAATGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGAGCACACCTGGCAGGTGTGTTAAACTATTGGAAGAATGTCATT  400

seq1  TCCTTACTCAGAAGGGAGCCAGCCCCTACTTCCTCTCTCAATTTCAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCAGAAGGGAGCCAGCCCCTACTTCCTCTCTCAATTTCAAACA  450

seq1  GCCTCATTATAGTTGGGGAAGCCAATGCATAATTTTTAAAAGTTTATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTATAGTTGGGGAAGCCAATGCATAATTTTTAAAAGTTTATCCA  500

seq1  AGCACATAACTCCAGATAAGATGTGAAATGTAGAACAGGGCGCTGATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATAACTCCAGATAAGATGTGAAATGTAGAACAGGGCGCTGATGTA  550

seq1  CTCTTCGTACATTGCATAGAAACAGACTCTGCATCAACAGTAACAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCGTACATTGCATAGAAACAGACTCTGCATCAACAGTAACAGTTTC  600

seq1  CTCCCGGGAAATGCATTTGGCAGGTCCCAGGGTGACTAAAGAGAGCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGGGAAATGCATTTGGCAGGTCCCAGGGTGACTAAAGAGAGCATGC  650

seq1  AGAGGGCTGGAAACAACTCTGTCCCTGGTCAGG-TTGTGCTCACTGGTCC  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGGGCTGGAAACAACTCTGTCCCTGGTCAGGTTTGTGCTCACTGGTCC  700

seq1  TGGAGATTTAGGGGTGCATTCAGAGGAGAGGAGAGGAAAGGAGAGACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTTAGGGGTGCATTCAGAGGAGAGGAGAGGAAAGGAGAGACACT  750

seq1  TGTCAAACTCAGGAGTGCTGGCCGCTAAAACGATGTTTCTTAGAAATGCT  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTCAAACTCAGGAGTGCTGGCCGCT-AAACGATGTTTCTTAGAAATGCT  799

seq1  TTGGACACATTGCTAAAAAGAAAAAACAAAATCTCTGTGCTGCTCAGATA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGACACATTGCT-AAAAGAAAAAACAAAATCTCTGTGCTGCTCAGATA  848

seq1  TACGGAATGAGCA-TTTATTGTCTTGGTTCCATGTAGTCTGGGTAGTCGT  898
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACGGAATGAGCATTTTATTGTCTTGGTTCCATGTAGTCTGGGTAGTCGT  898

seq1  GTCCAGGAGAAATTTCGTCCTATCAGTGAGTTCGACAGCTAAAA-TGGGC  947
      |||||||||||||||||| |||| |||||||||||||||||||| |||||
seq2  GTCCAGGAGAAATTTCGT-CTATTAGTGAGTTCGACAGCTAAAATTGGGC  947

seq1  GGATAAAGGAGCAACATGGTT-GGAGAGACAGTGGTCTATCAGGCAGCCC  996
      ||||| | ||||||||||||| |||||||||| ||||||||| |||||||
seq2  GGATATA-GAGCAACATGGTTGGGAGAGACAG-GGTCTATCAAGCAGCCC  995

seq1  CCTTCTGGTATCCTGCTATTGTGCCAGGACTCAGTGGGGCG-CTCTT-CC  1044
      ||||||||||| ||||||| ||||||||||||| ||||||| ||||| ||
seq2  CCTTCTGGTAT-CTGCTATGGTGCCAGGACTCA-TGGGGCGCCTCTTCCC  1043

seq1  TATTATGTAGTGTGTTCAGGGTAACAAACCAAATG  1079
      |||||||||  ||| ||||||||   |||||||||
seq2  TATTATGTAAGGTG-TCAGGGTACACAACCAAATG  1077