BAC Information

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BAC

Clone NameB6Ng01-113P05
Chromosome13 (Build37)
Map Location 39,877,800 - 40,023,584
singlet/doubletdoublet
Overlap geneA230103O09Rik
Upstream geneSlc35b3, EG666867, LOC100041779, LOC382747
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113P05.bB6Ng01-113P05.g
ACCDH919602DH919603
length1,1681,094
definitionDH919602|Mus musculus domesticus DNA, BAC clone: B6Ng01-113P05, 5' end.DH919603|Mus musculus domesticus DNA, BAC clone: B6Ng01-113P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,877,800 - 39,878,972)(40,022,478 - 40,023,584)
sequence
gaattcagggattggcttgcttggacacaattattctacctccaaaacca
accaaactataagaaacgtaagagcaaacccactcatctgcaaggagctc
taccacacaaggtaatctctatcctgtagttcagcctcatctgctgcttt
atagttagattatgaactgcattctaaagaccccctgatcccaaagagga
tgcattttgttctgtcctgagtactcatgtgtgggaggtacaacatccca
cactcaccggattgacagagaacaagaatttctattgcaggatacttcca
aggagtgagttaagacagcctcagactttgttacttccaaatagaaacag
attttgctccagaattccctagttttatgtttggggcagctttgtgtagc
cttggacacataatttttgtacatttttggagcctcgtttctggttttct
ctcatcacccttctcagatatcactttccgcactcagtagttctggatag
atacatcggcccattcctcattatgtttttgagtcatcctgactgacaca
ctatctctccccactccttccctctcttcttcatcccctccttccaccta
tataggtctactttccccaccctcctcccacaccacacaaaggcagagaa
tgttcatttttatctttgtttttagttcatggcctgcagaggaactaggg
aatattcctgcatgcaatgctattcagaatgtactgcggtctcctgggaa
tcaactctactgacatgaggtgaaagtcatctcccaccatgttactttaa
gagccagcatgacaagacaattgatgttgcattcattgactaatgctcct
gatggtttaaagctgaactcttgcaatttcattggtacaaatcataattt
ccttctgcttccatattcttttttttttctaccccaagaactcctctgag
atgaacgagcatccacgtattgaaaggcaagggagttatgcacaacattg
ccatgatggttgtaaatggatcacttatattgactggaccaagaggactt
ggggtcagttagcaggggttcctttatcagaaatgcacagaactaagaat
ggaaaccccatcttccaccttctcctgggtttcggacctcaaccatgcaa
ctggatcttggctcaaag
gaattcatactgtaggccagcgaacccttgatgttgcttcaacctccaga
gtagatagatgagttttcaggcccaataggattggggtagtttcaataac
ctgtctccttacaatttttctatacagaatcagatggttcctaacttact
atgattggatctagaatttttttaaacctttatgtctatgtgaaaatgat
gcattttcattagaacatctacctggaatcctgattccccaccccaaccc
ccaggctggagacagctagttcgtcctactcttatgctgtcactccaatg
acagctccagccacatgcccatgaggggcacaagcaccattgtgaaatac
caagcagaaactttataatcaccaaccacatcaaaattcaaatttaagac
tcagataggcggtgatggtggtatgtacctttcatcccagtactcaggag
gcagaagcaggtggacctctatgagttcagggcctggtctacacagctag
ttccaggacagccaggtctatacaaagaaaccctgtctcaaaaaacaaaa
acaaaaattcaaatttaagactcaatagagagtgctgggaatccatttac
tcaagtgctcccttatttgcttattcatcctctcattcacagattatcaa
cttagtgttggtgcagtggttctagtcagaccatgtatgcatccctcagg
tacaatggtggttgacaacacaaagatcacactacaggctaattggcata
tgaaaatggatattaaaaaaatacaacctaaaaaaaacagaaacaagtga
ggattcttgagtttgacattttaggcttaagggagagcccatttaaggcc
tgctctagctagtctagaatggcaacatttgacagaaaaggtccacactt
cctctggaggacttggaaaacaaacgcaagagcaaaacagcccagttctc
agttgcaggagtaagaccaagggaagagaaaagagagagagagacgatgt
atccagtcttttgagttacacacccgattcctgagtcagagctggttcac
agcagattaagattgcaagtggatcgaagaccagtttcctttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39877800_39878972
seq2: B6Ng01-113P05.b_46_1213

seq1  GAATTCAGGGATTGGCTTGCTTGGACACAATTATTCTACCTCCAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATTGGCTTGCTTGGACACAATTATTCTACCTCCAAAACCA  50

seq1  ACCAAACTATAAGAAACGTAAGAGCAAACCCACTCATCTGCAAGGAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTATAAGAAACGTAAGAGCAAACCCACTCATCTGCAAGGAGCTC  100

seq1  TACCACACAAGGTAATCTCTATCCTGTAGTTCAGCCTCATCTGCTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACAAGGTAATCTCTATCCTGTAGTTCAGCCTCATCTGCTGCTTT  150

seq1  ATAGTTAGATTATGAACTGCATTCTAAAGACCCCCTGATCCCAAAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGATTATGAACTGCATTCTAAAGACCCCCTGATCCCAAAGAGGA  200

seq1  TGCATTTTGTTCTGTCCTGAGTACTCATGTGTGGGAGGTACAACATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTGTTCTGTCCTGAGTACTCATGTGTGGGAGGTACAACATCCCA  250

seq1  CACTCACCGGATTGACAGAGAACAAGAATTTCTATTGCAGGATACTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCGGATTGACAGAGAACAAGAATTTCTATTGCAGGATACTTCCA  300

seq1  AGGAGTGAGTTAAGACAGCCTCAGACTTTGTTACTTCCAAATAGAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGAGTTAAGACAGCCTCAGACTTTGTTACTTCCAAATAGAAACAG  350

seq1  ATTTTGCTCCAGAATTCCCTAGTTTTATGTTTGGGGCAGCTTTGTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCCAGAATTCCCTAGTTTTATGTTTGGGGCAGCTTTGTGTAGC  400

seq1  CTTGGACACATAATTTTTGTACATTTTTGGAGCCTCGTTTCTGGTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACACATAATTTTTGTACATTTTTGGAGCCTCGTTTCTGGTTTTCT  450

seq1  CTCATCACCCTTCTCAGATATCACTTTCCGCACTCAGTAGTTCTGGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACCCTTCTCAGATATCACTTTCCGCACTCAGTAGTTCTGGATAG  500

seq1  ATACATCGGCCCATTCCTCATTATGTTTTTGAGTCATCCTGACTGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCGGCCCATTCCTCATTATGTTTTTGAGTCATCCTGACTGACACA  550

seq1  CTATCTCTCCCCACTCCTTCCCTCTCTTCTTCATCCCCTCCTTCCACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTCCCCACTCCTTCCCTCTCTTCTTCATCCCCTCCTTCCACCTA  600

seq1  TATAGGTCTACTTTCCCCACCCTCCTCCCACACCACACAAAGGCAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTCTACTTTCCCCACCCTCCTCCCACACCACACAAAGGCAGAGAA  650

seq1  TGTTCATTTTTATCTTTGTTTTTAGTTCATGGCCTGCAGAGGAACTAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTTTATCTTTGTTTTTAGTTCATGGCCTGCAGAGGAACTAGGG  700

seq1  AATATTCCTGCATGCAATGCTATTCAGAATGTACTGCGGTCTCCTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTGCATGCAATGCTATTCAGAATGTACTGCGGTCTCCTGGGAA  750

seq1  TCAACTCTACTGACATGAGGTGAAAGTCATCTCCCACCATGTTAC-TTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAACTCTACTGACATGAGGTGAAAGTCATCTCCCACCATGTTACTTTAA  800

seq1  GAGCCAGCATGACAAGACAATTGATGTTGCATTCATTGACTAATGCTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCATGACAAGACAATTGATGTTGCATTCATTGACTAATGCTCCT  850

seq1  GATGGTTT-AAGCTGAACTCTTGGCAATTTCATTGGTACAAATCATAATT  898
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  GATGGTTTAAAGCTGAACTCTT-GCAATTTCATTGGTACAAATCATAATT  899

seq1  TCCTTCTGCTTCCATATTCTTTTTTTTTTCTACCCCAAGAAACTCCTCTG  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCTTCTGCTTCCATATTCTTTTTTTTTTCTACCCCAAG-AACTCCTCTG  948

seq1  AGATGAACGAGCATCCACGTATTGAAAGGCAAGGGAG-TATGCACAACAT  997
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGATGAACGAGCATCCACGTATTGAAAGGCAAGGGAGTTATGCACAACAT  998

seq1  TGCCATGATGGTTGTTAAATGATCACATTATA-TGACTGGAACAAAGAGA  1046
      ||||||||||||||| ||  |||||| ||||| |||||||| |||   ||
seq2  TGCCATGATGGTTGTAAATGGATCAC-TTATATTGACTGGACCAAGAGGA  1047

seq1  CTTTGGGTCATGTTAGCAGGGGGTTCCTTTATTCAG-AATGCACAG-ACT  1094
      ||| |||||| ||||||| |||||||||||| |||| ||||||||| |||
seq2  CTTGGGGTCA-GTTAGCA-GGGGTTCCTTTA-TCAGAAATGCACAGAACT  1094

seq1  AAGAATGGAACCCCCAATCTTTCCACCTTCTCCTTGGTTTCTGACCTACA  1144
      |||||||||| |||| ||| |||||||||||||| |||||| ||||| ||
seq2  AAGAATGGAAACCCC-ATC-TTCCACCTTCTCCTGGGTTTCGGACCT-CA  1141

seq1  CCCATGCAAACTGAGTCTTTGGCTCAAAG  1173
       |||||| |||||  || |||||||||||
seq2  ACCATGC-AACTGGATC-TTGGCTCAAAG  1168

seq1: chr13_40022478_40023584
seq2: B6Ng01-113P05.g_68_1161 (reverse)

seq1  CCAAAAGGGAAACTGGTCTTCGATCCACCTGGCAATCTTTAATCTGCTGT  50
      |||||  |||||||||||||||||||| || |||||| ||||||||||||
seq2  CCAAA--GGAAACTGGTCTTCGATCCA-CTTGCAATC-TTAATCTGCTGT  46

seq1  G-ATCAGCTCCTGACTCAAGGAATCCGGGTGTGTAAACTC-AAAGACTTG  98
      | | ||||| ||||||| |||||| ||||||||| ||||| |||||| ||
seq2  GAACCAGCT-CTGACTC-AGGAAT-CGGGTGTGT-AACTCAAAAGAC-TG  91

seq1  GATACATCGTCTCCTCTCTCTCCTTTTTCTCCTTCCCCTTTGTGTCCTTT  148
      |||||||||||| |||||||||  |||||| ||||||  ||| |||  ||
seq2  GATACATCGTCT-CTCTCTCTC--TTTTCT-CTTCCC--TTG-GTC--TT  132

seq1  ACTCCTGCAACTGAGAACTGGGCTGTTTGCCTCTTGCGTTTGTTTTCCAA  198
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ACTCCTGCAACTGAGAACTGGGCTGTTTTGCTCTTGCGTTTGTTTTCCAA  182

seq1  GTCCTCCAGAGGAAGTGTGGACCTTTTCTGTC-AATGTTGCCATTCTAGA  247
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCCTCCAGAGGAAGTGTGGACCTTTTCTGTCAAATGTTGCCATTCTAGA  232

seq1  CTAGCTAGAGCAGGCCTTAAATTGGCTCTCCC-TAAGCCTAAAATGTC-A  295
      |||||||||||||||||||||| ||||||||| ||||||||||||||| |
seq2  CTAGCTAGAGCAGGCCTTAAATGGGCTCTCCCTTAAGCCTAAAATGTCAA  282

seq1  ACTCAAGAATCCTCACTTGTTTCTGTTTTTTTTAGGTTGTATTTTTTTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAATCCTCACTTGTTTCTGTTTTTTTTAGGTTGTATTTTTTTAA  332

seq1  TATCCATTTTCATATGCCAATTAGCCTGTAGTGTGATCTTTGTGTTGTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTTTCATATGCCAATTAGCCTGTAGTGTGATCTTTGTGTTGTCA  382

seq1  ACCACCATTGTACCTGAGGGATGCATACATGGTCTGACTAGAACCACTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATTGTACCTGAGGGATGCATACATGGTCTGACTAGAACCACTGC  432

seq1  ACCAACACTAAGTTGATAATCTGTGAATGAGAGGATGAATAAGCAAATAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACTAAGTTGATAATCTGTGAATGAGAGGATGAATAAGCAAATAA  482

seq1  GGGAGCACTTGAGTAAATGGATTCCCAGCACTCTCTATTGAGTCTTAAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCACTTGAGTAAATGGATTCCCAGCACTCTCTATTGAGTCTTAAAT  532

seq1  TTGAATTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTTTGTATAGACCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTTTGTATAGACCTG  582

seq1  GCTGTCCTGGAACTAGCTGTGTAGACCAGGCCCTGAACTCATAGAGGTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTAGCTGTGTAGACCAGGCCCTGAACTCATAGAGGTCC  632

seq1  ACCTGCTTCTGCCTCCTGAGTACTGGGATGAAAGGTACATACCACCATCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTCTGCCTCCTGAGTACTGGGATGAAAGGTACATACCACCATCA  682

seq1  CCGCCTATCTGAGTCTTAAATTTGAATTTTGATGTGGTTGGTGATTATAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTATCTGAGTCTTAAATTTGAATTTTGATGTGGTTGGTGATTATAA  732

seq1  AGTTTCTGCTTGGTATTTCACAATGGTGCTTGTGCCCCTCATGGGCATGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGCTTGGTATTTCACAATGGTGCTTGTGCCCCTCATGGGCATGT  782

seq1  GGCTGGAGCTGTCATTGGAGTGACAGCATAAGAGTAGGACGAACTAGCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGCTGTCATTGGAGTGACAGCATAAGAGTAGGACGAACTAGCTG  832

seq1  TCTCCAGCCTGGGGGTTGGGGTGGGGAATCAGGATTCCAGGTAGATGTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCTGGGGGTTGGGGTGGGGAATCAGGATTCCAGGTAGATGTTC  882

seq1  TAATGAAAATGCATCATTTTCACATAGACATAAAGGTTTAAAAAAATTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAATGCATCATTTTCACATAGACATAAAGGTTTAAAAAAATTCT  932

seq1  AGATCCAATCATAGTAAGTTAGGAACCATCTGATTCTGTATAGAAAAATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAATCATAGTAAGTTAGGAACCATCTGATTCTGTATAGAAAAATT  982

seq1  GTAAGGAGACAGGTTATTGAAACTACCCCAATCCTATTGGGCCTGAAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGACAGGTTATTGAAACTACCCCAATCCTATTGGGCCTGAAAAC  1032

seq1  TCATCTATCTACTCTGGAGGTTGAAGCAACATCAAGGGTTCGCTGGCCTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATCTACTCTGGAGGTTGAAGCAACATCAAGGGTTCGCTGGCCTA  1082

seq1  CAGTATGAATTC  1107
      ||||||||||||
seq2  CAGTATGAATTC  1094