BAC Information

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BAC

Clone NameB6Ng01-114N10
Chromosome13 (Build37)
Map Location 41,560,869 - 41,664,939
singlet/doubletdoublet
Overlap geneNedd9
Upstream geneLOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659
Downstream geneEG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114N10.bB6Ng01-114N10.g
ACCDH920258DH920259
length1,1481,046
definitionDH920258|Mus musculus domesticus DNA, BAC clone: B6Ng01-114N10, 5' end.DH920259|Mus musculus domesticus DNA, BAC clone: B6Ng01-114N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,560,869 - 41,562,037)(41,663,885 - 41,664,939)
sequence
gaattccatgatttccttttgtttttgaggcaaggggttcctataggcca
gtgttcctgcacctggtggctcctaacaccacctagggtgctttagaaac
acagtactggcttcacacatctgtgaatttgggctttacaagaattggtt
ggagccagagatctgtgttgttgttttttaaaatctttgaaggtgacatg
aatataaattattcacgaatgtcagttcatcaactctcatcaatgataga
ttgctttcctcgcatttcaaaaacgaccaacagaaaccattgtttgactc
catgtttggtacatcttgaactttccatgcaccctgagggcttgtgagaa
gagggattgctgcctcatccacccctatttctgttagagtagaaccaggc
aagaccagatatatgcagacatagaaactgttttcagaagctgtcacctg
ccattaggagcaccattttagatcctaaattcagttgagtatctagtgtg
gtctctttacgtcgttcataccattgcctttggacctcaacctagtacag
taattagtaaatttctggtgaagaatggaaaagattggaggtatagttca
gtggttgaatatttgcttaacacaaagaagccctggctttaatactaaat
gtatatttgtggaatacagtgagatattttaaaacatgtgatataatgat
caaaccagataactggtatacccatcacctcaagaatctatcttttcttt
gcagtcagctgcttgaagactatggactatatcctttaccacaggagaac
tgattctgttggctctgaggcagtctcatgggaccttggctgagatatgg
gtgggaacaacaggatttcctgctttcacattaggaactttgcactgagc
acaatgtaccaacagcggctgtgtcttattctggggccctggccaatcct
gcctaatcttctacaaattccattttgctttatacttctatttatgcctt
gccacagtcatttctgacgttttaaaaaatcttcttgtagtgtttgtttt
aaattatttgtaagtgatacacaggcacatccatcgctgttcctttcatc
ttgttcctaggctaacaatgatctcctgaatgatacactgaattctcc
gaattctcagtggtcagcttgcccgggcgattggtaagatctagggaaat
cattgagaaactctatctcgcagaataaggtggagataacagaggaagac
tcttgatgccagcctctggtcttgacatgtgcatgcacaggtgtgggtgt
gtgtacacatcacacacacacacacacacacacacacacacacacacaca
cacacacctctgcacctttctgcatccaagcggtaagtctcctacccctc
tcttcgattctgtcagcattagaatttccccggaggccggccaacttggt
cttttccacccagacttccatttagcaacctgagtgatgctcatttcctg
tgagttttgcaatggccttgcaaaattattccatttttgtaataatggag
agggttcatgaactgattcggacactgaccacctggaaacacccgtttgt
ttaccaaggaagtccttgtcagtccttccctgtctgacccctcttctcac
ttctttccgttttcatttaaatcctccagccagactctgcttccctgtga
cttgataaagtgggacatacctctgtcacttcatcaaacttacccgtgtg
accctctcagagtctgatactatgagaggactggtttcggcagaggagta
cacagttgctactttcccctgactgcttggtatatcacaagctctggctt
ctctaggagaagaaaggctaactggggtggccttcactagaggtatctgt
tctctggttgcaattagggggagtagctgggagaagtaagctagaccaca
tgcaaatgcggatcaaggcctaaagatgtgatatcagacttaaagaatgc
aagaactgtttttaaaagtaggcaagtttgcctgttgtgtgggcagcccc
aggaagaccatctctctctttgtgcagtgatatacaaacaaaggcattaa
atagattatagggtgatacccatgccagcatccctagtccctgcctctga
tgtgctgtggtatatcatacatctggagagaagtttctcttctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41560869_41562037
seq2: B6Ng01-114N10.b_44_1191

seq1  GAATTCCATGATTTCCTTTTGTTTTTGAGGCAAGGGGTTCCTATAGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATTTCCTTTTGTTTTTGAGGCAAGGGGTTCCTATAGGCCA  50

seq1  GTGTTCCTGCACCTGGTGGCTCCTAACACCACCTAGGGTGCTTTAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTGCACCTGGTGGCTCCTAACACCACCTAGGGTGCTTTAGAAAC  100

seq1  ACAGTACTGGCTTCACACATCTGTGAATTTGGGCTTTACAAGAATTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTGGCTTCACACATCTGTGAATTTGGGCTTTACAAGAATTGGTT  150

seq1  GGAGCCAGAGATCTGTGTTGTTGTTTTTTAAAATCTTTGAAGGTGACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGAGATCTGTGTTGTTGTTTTTTAAAATCTTTGAAGGTGACATG  200

seq1  AATATAAATTATTCACGAATGTCAGTTCATCAACTCTCATCAATGATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATTATTCACGAATGTCAGTTCATCAACTCTCATCAATGATAGA  250

seq1  TTGCTTTCCTCGCATTTCAAAAACGACCAACAGAAACCATTGTTTGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCCTCGCATTTCAAAAACGACCAACAGAAACCATTGTTTGACTC  300

seq1  CATGTTTGGTACATCTTGAACTTTCCATGCACCCTGAGGGCTTGTGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGGTACATCTTGAACTTTCCATGCACCCTGAGGGCTTGTGAGAA  350

seq1  GAGGGATTGCTGCCTCATCCACCCCTATTTCTGTTAGAGTAGAACCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATTGCTGCCTCATCCACCCCTATTTCTGTTAGAGTAGAACCAGGC  400

seq1  AAGACCAGATATATGCAGACATAGAAACTGTTTTCAGAAGCTGTCACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGATATATGCAGACATAGAAACTGTTTTCAGAAGCTGTCACCTG  450

seq1  CCATTAGGAGCACCATTTTAGATCCTAAATTCAGTTGAGTATCTAGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGGAGCACCATTTTAGATCCTAAATTCAGTTGAGTATCTAGTGTG  500

seq1  GTCTCTTTACGTCGTTCATACCATTGCCTTTGGACCTCAACCTAGTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTACGTCGTTCATACCATTGCCTTTGGACCTCAACCTAGTACAG  550

seq1  TAATTAGTAAATTTCTGGTGAAGAATGGAAAAGATTGGAGGTATAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTAAATTTCTGGTGAAGAATGGAAAAGATTGGAGGTATAGTTCA  600

seq1  GTGGTTGAATATTTGCTTAACACAAAGAAGCCCTGGCTTTAATACTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGAATATTTGCTTAACACAAAGAAGCCCTGGCTTTAATACTAAAT  650

seq1  GTATATTTGTGGAATACAGTGAGATATTTTAAAACATGTGATATAATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTGTGGAATACAGTGAGATATTTTAAAACATGTGATATAATGAT  700

seq1  CAAACCAGATAACTGGTATACCCATCACCTCAAGAATCTATCTTTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGATAACTGGTATACCCATCACCTCAAGAATCTATCTTTTCTTT  750

seq1  GCAGTCAGCTGCTTGAAGACTATGGACTATATCCTTTACCACAGGAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGCTGCTTGAAGACTATGGACTATATCCTTTACCACAGGAGAAC  800

seq1  TGATTCTGTTGGCTCTGAGGCAGTCTCATGGGACCTTGGCTGAGGATATG  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGATTCTGTTGGCTCTGAGGCAGTCTCATGGGACCTTGGCTGA-GATATG  849

seq1  GGTGGGAACAACAGGATTTCCTGCTTTCAACATTAGGAACTTTGCACTGA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTGGGAACAACAGGATTTCCTGCTTTC-ACATTAGGAACTTTGCACTGA  898

seq1  GCACAATGTACCAACAGCGGCTGTGTCCTATTCTGGGGCCCCTGGCCAAT  950
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GCACAATGTACCAACAGCGGCTGTGTCTTATTCTGGGG-CCCTGGCCAAT  947

seq1  CCTGCCTAATCTTCTACAAATTCCATTTTGCTTTATTACTTTCTATTTAT  1000
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  CCTGCCTAATCTTCTACAAATTCCATTTTGCTTTA-TAC-TTCTATTTAT  995

seq1  GCCTTGCCCACCAGTTCATTTCTGACCTTTTTTAAAAAAAATCTTCTTGT  1050
      ||||||||   ||| ||||||||||| ||||    |||||||||||||||
seq2  GCCTTGCC--ACAG-TCATTTCTGACGTTTT----AAAAAATCTTCTTGT  1038

seq1  AGTGTTTTGGTTTTTAAATATATTTGTAGGGTGATTACACAGGCACATTC  1100
      |||||||    |||||||| ||||||||  |||| |||||||||||||  
seq2  AGTGTTT---GTTTTAAAT-TATTTGTA-AGTGA-TACACAGGCACAT--  1080

seq1  TCATCGCTGTTTCTCTTCATTCCTGTTCCTAAGCTTACAATGATCTTCCT  1150
       |||||||||| || |||| || |||||||| ||| ||||||||| ||||
seq2  CCATCGCTGTTCCT-TTCA-TCTTGTTCCTAGGCTAACAATGATC-TCCT  1127

seq1  GAATGAT-CACTGAA-TCTCC  1169
      ||||||| ||||||| |||||
seq2  GAATGATACACTGAATTCTCC  1148

seq1: chr13_41663885_41664939
seq2: B6Ng01-114N10.g_68_1113 (reverse)

seq1  TCTAGGAGAGAAACCTTCTCTCCAGATGGTAATGATTATACCACAGGCAC  50
      ||||| ||||||| ||||||||||||||   |||| ||||||||| ||| 
seq2  TCTAGAAGAGAAA-CTTCTCTCCAGATG--TATGA-TATACCACA-GCA-  44

seq1  CATCAGGAGGCAGGGGACTAGGGATGCTGGCATGGGTATCACCCTATATT  100
      ||||| |||||| ||||||||||||||||||||||||||||||||||| |
seq2  CATCA-GAGGCA-GGGACTAGGGATGCTGGCATGGGTATCACCCTATAAT  92

seq1  CTATTTAATGCCTTTGTTTGTATATCACTGCACAAAGAGGAGAGATGGTC  150
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  CTATTTAATGCCTTTGTTTGTATATCACTGCACAAAGA-GAGAGATGGT-  140

seq1  CTTCCTGGGGCTGCCCACACAACAGGC-AACTTGCCTACTTTTAAAAACA  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTCCTGGGGCTGCCCACACAACAGGCAAACTTGCCTACTTTTAAAAACA  190

seq1  GTTCTTGCATTCTTTAAGTCTGATATCACATCTTTAGGCCTTGATCCGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCATTCTTTAAGTCTGATATCACATCTTTAGGCCTTGATCCGCA  240

seq1  TTTGCATGTGGTCTAGCTTACTTCTCCCAGCTACTCCCCCTAATTGCAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTGGTCTAGCTTACTTCTCCCAGCTACTCCCCCTAATTGCAAC  290

seq1  CAGAGAACAGATACCTCTAGTGAAGGCCACCCCAGTTAGCCTTTCTTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACAGATACCTCTAGTGAAGGCCACCCCAGTTAGCCTTTCTTCTC  340

seq1  CTAGAGAAGCCAGAGCTTGTGATATACCAAGCAGTCAGGGGAAAGTAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAGCCAGAGCTTGTGATATACCAAGCAGTCAGGGGAAAGTAGCA  390

seq1  ACTGTGTACTCCTCTGCCGAAACCAGTCCTCTCATAGTATCAGACTCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTACTCCTCTGCCGAAACCAGTCCTCTCATAGTATCAGACTCTGA  440

seq1  GAGGGTCACACGGGTAAGTTTGATGAAGTGACAGAGGTATGTCCCACTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCACACGGGTAAGTTTGATGAAGTGACAGAGGTATGTCCCACTTT  490

seq1  ATCAAGTCACAGGGAAGCAGAGTCTGGCTGGAGGATTTAAATGAAAACGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCACAGGGAAGCAGAGTCTGGCTGGAGGATTTAAATGAAAACGG  540

seq1  AAAGAAGTGAGAAGAGGGGTCAGACAGGGAAGGACTGACAAGGACTTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTGAGAAGAGGGGTCAGACAGGGAAGGACTGACAAGGACTTCCT  590

seq1  TGGTAAACAAACGGGTGTTTCCAGGTGGTCAGTGTCCGAATCAGTTCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAACAAACGGGTGTTTCCAGGTGGTCAGTGTCCGAATCAGTTCATG  640

seq1  AACCCTCTCCATTATTACAAAAATGGAATAATTTTGCAAGGCCATTGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTCCATTATTACAAAAATGGAATAATTTTGCAAGGCCATTGCAA  690

seq1  AACTCACAGGAAATGAGCATCACTCAGGTTGCTAAATGGAAGTCTGGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGGAAATGAGCATCACTCAGGTTGCTAAATGGAAGTCTGGGTG  740

seq1  GAAAAGACCAAGTTGGCCGGCCTCCGGGGAAATTCTAATGCTGACAGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACCAAGTTGGCCGGCCTCCGGGGAAATTCTAATGCTGACAGAAT  790

seq1  CGAAGAGAGGGGTAGGAGACTTACCGCTTGGATGCAGAAAGGTGCAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGAGGGGTAGGAGACTTACCGCTTGGATGCAGAAAGGTGCAGAGG  840

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGT  890

seq1  GTACACACACCCACACCTGTGCATGCACATGTCAAGACCAGAGGCTGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACACCCACACCTGTGCATGCACATGTCAAGACCAGAGGCTGGCA  940

seq1  TCAAGAGTCTTCCTCTGTTATCTCCACCTTATTCTGCGAGATAGAGTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGTCTTCCTCTGTTATCTCCACCTTATTCTGCGAGATAGAGTTTC  990

seq1  TCAATGATTTCCCTAGATCTTACCAATCGCCCGGGCAAGCTGACCACTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATTTCCCTAGATCTTACCAATCGCCCGGGCAAGCTGACCACTGA  1040

seq1  GAATTC  1055
      ||||||
seq2  GAATTC  1046