BAC Information

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BAC

Clone NameB6Ng01-115O04
Chromosome13 (Build37)
Map Location 99,342,481 - 99,343,335
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328314, LOC100039526, LOC100039740, Rgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854
Downstream geneLOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115O04.g
ACCDH921032
length1,146
definitionDH921032|Mus musculus domesticus DNA, BAC clone: B6Ng01-115O04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cctctttcaggggctctggcggcctgttgtgggctcgagttctagtgatt
tttaaaagggtccgaggaattcacctgcctgcttcctgtggggttcgtgt
tggtgggcttcccctggccaccgctgtgccaggacgaggaaagggtttgt
ttggttttcccgccctcctgtgagggaagcagggctgccctcgtagtggg
agaaagctaaggctggtccatggacggtagctgcttactggcttgctctt
aggtttgctctgtttgctttcttattttacatctatttttaatcttgtgt
gatgtggctgggaccaccctgagcctcgggtgtctccaaatgtggcgcaa
gccaccccacgccgagcgaggtgggatcggatattcccgtgtgtgggtgt
tggtggagattttgggctgctgggcctgtgaatttgactagtgtaatcgc
acagtctgaggccgtaggaaacctctgcgtcccggggtccctgtgccact
atcagccgcaggcaacgacgcacagggcattcgcctggtggcgcagtgct
agctgggggtcccagtaccgcagcgggcttcccagaccgcaattcctgga
cgacaaagtccgcagtgtttgcgatcgggggatgggcaaagcgcgcacac
gaatgtggtgcgtggacacgtcccgcgaccatcccggagggtcttctgcc
cacccgcagcccggctcggcgcggttcccaccagccagtgctcgcgcttt
cctccctcggtcagcgatccaagccgctggtccagctgtcaaaacagggg
gtgtctctttcattctggctcacaaagtcccaaaggggaacaagggggcc
ttaatgcttgtgtttggacacaagcattatccctaattattctttttctt
tgagcctgcccgtcctgcgggcgagccgccgaggaacaggccccgttatc
ctctccggtcggcgaagctcagtggggttctgtgcggccgaggcccgggc
gctttcatgtcattgcgggtttagagctgattcaactcttgcgatgggga
attaacccgaggactctgctttcaagggctctgataagaggataatacgt
gttgaagcaagcttttcctggcaatggtattcaaggccttggagtt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_99342481_99343335
seq2: B6Ng01-115O04.g_301_1146 (reverse)

seq1  AACTCCAAGCCCTTTGAAAACATTTTGCCAGGAAAAGCTTGCCATCAACA  50
      ||||||||| ||||  | | ||  ||||||||||||||||| | ||||||
seq2  AACTCCAAGGCCTTGAATACCA--TTGCCAGGAAAAGCTTG-CTTCAACA  47

seq1  CGTATAAT-CTCTTATCAGAGGCCCCTGAAAGCCAGGGCCTCGGGGTTAA  99
      ||||| || ||||||||||| |||| |||||||   | |||| |||||||
seq2  CGTATTATCCTCTTATCAGA-GCCCTTGAAAGCAGAGTCCTC-GGGTTAA  95

seq1  TTCCCCCATCGCAATGAGTTTGAATCAGCTCTAAACCCGCAATGACATGA  149
      || ||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  TT-CCCCATCGCAA-GAG-TTGAATCAGCTCTAAACCCGCAATGACATGA  142

seq1  AAGCGCCCGGGCCTCGGGCCGCACAGAA-CCCACTGAGCTTCGCCGGCCG  198
      ||||||||||||||| |||||||||||| ||||||||||||||||| |||
seq2  AAGCGCCCGGGCCTC-GGCCGCACAGAACCCCACTGAGCTTCGCCGACCG  191

seq1  GGGAGGATTACGGGGCCTGTTCCTCGGCGGGCTCGCCCGCAGGACGGGCA  248
      | |||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  GAGAGGATAACGGGGCCTGTTCCTCGGC-GGCTCGCCCGCAGGACGGGCA  240

seq1  GGCTCAAAAGAAAAAGAATAATTAGGGATAATTGCTTGTGTCCAAACACA  298
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTC-AAAGAAAAAGAATAATTAGGGATAA-TGCTTGTGTCCAAACACA  288

seq1  AGCATTAAGGCCCCCTTGTTCCCCTTTGGGACTTTGTGAGCCAGAATGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAGGCCCCCTTGTTCCCCTTTGGGACTTTGTGAGCCAGAATGAA  338

seq1  AGAGACACCCCCTGTTTTGACAGCTGGACCAGCGGCTTGGATCGCTGACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACCCCCTGTTTTGACAGCTGGACCAGCGGCTTGGATCGCTGACC  388

seq1  GAGGGAGG-AAGCGCGAGCACTGGCTGGTGGGAACCGCGCCGAGCCGGGC  447
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGAAAGCGCGAGCACTGGCTGGTGGGAACCGCGCCGAGCCGGGC  438

seq1  TGCGGGTGGGCAGAAGACCCTCCGGGATGGTCGCGGGACGTGTCCACGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGTGGGCAGAAGACCCTCCGGGATGGTCGCGGGACGTGTCCACGCA  488

seq1  CCACATTCGTGTGCGCGCTTTGCCCATCCCCCGATCGCAAACACTGCGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCGTGTGCGCGCTTTGCCCATCCCCCGATCGCAAACACTGCGGA  538

seq1  CTTTGTCGTCCAGGAATTGCGGTCTGGGAAGCCCGCTGCGGTACTGGGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCGTCCAGGAATTGCGGTCTGGGAAGCCCGCTGCGGTACTGGGAC  588

seq1  CCCCAGCTAGCACTGCGCCACCAGGCGAATGCCCTGTGCGTCGTTGCCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTAGCACTGCGCCACCAGGCGAATGCCCTGTGCGTCGTTGCCTG  638

seq1  CGGCTGATAGTGGCACAGGGACCCCGGGACGCAGAGGTTTCCTACGGCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGATAGTGGCACAGGGACCCCGGGACGCAGAGGTTTCCTACGGCCT  688

seq1  CAGACTGTGCGATTACACTAGTCAAATTCACAGGCCCAGCAGCCCAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGCGATTACACTAGTCAAATTCACAGGCCCAGCAGCCCAAAAT  738

seq1  CTCCACCAACACCCACACACGGGAATATCCGATCCCACCTCGCTCGGCGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAACACCCACACACGGGAATATCCGATCCCACCTCGCTCGGCGT  788

seq1  GGGGTGGCCTGCGCCACATTTGGAGACACCCGAGGCACAGGGTGGTCCCA  847
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GGGGTGGCTTGCGCCACATTTGGAGACACCCGAGGCTCAGGGTGGTCCCA  838

seq1  GCCACATC  855
      ||||||||
seq2  GCCACATC  846