BAC Information

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BAC

Clone NameB6Ng01-116A09
Chromosome13 (Build37)
Map Location 26,184,618 - 26,298,942
singlet/doubletdoublet
Overlap geneLOC666221
Upstream geneDcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116A09.bB6Ng01-116A09.g
ACCDH921131DH921132
length1,1941,201
definitionDH921131|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A09, 5' end.DH921132|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,297,741 - 26,298,942)(26,184,618 - 26,185,860)
sequence
gaattccacactcctaagccccttaccccataaacacccctagctttcga
gccttgtggccggcatccgttatctcctgtgtgggatacatgtcggccca
gagctctgtcattaaactgcctcattacagcaagatggattcttgtgttt
ctttgggtgctctctcactcccaagactagagtgggggtccccaaaaggg
ggtcttacacttccacatccactgccagctccctttactttagtgtaagt
gtctaagagagaacacagagatcttctggcccacctactcatataatgtg
acaaaaaaaaatgtcaatttaagtttcacaatccatggacattaccagtc
atgtttacctacaatgacagtccctaacattttcctaatgaactctttct
gcattgggtagtactcaatgttctatccataacaaccaaaagttatggct
gctagccatggcatcccagaatgatagtcaccaatctctcccctgctaag
cctaggagatacatagttctgtttaaaatatagtcatccatgaccttatt
tgattcagttcctgatgcacttactgatggaaaataggattatgccaatc
ttgtctctttgtttcaagtgctttgcagacttgttaagtttagctgtaaa
taacctcactccctttgttctgtcatgtttagaagttctttgctgaagac
agggatcaatctttcaccatggataatgtaaaatgagcaaagggacagat
ttataaagttaagaagatatggaatataaacaaaagactcttgctttgct
aacctagatatagatacacaaaagtggaatgaagtttcaggattgtagta
gccaagtcgattctaattttcacaagaagagtttgcctcagatagttcca
ctgagagcatcaggattttagtaaagtattgtacatctcttctcatctga
aacttaagttcatgcagatgttacatatcctatgatggagagtcttccaa
agagggaaagtggatcctttgtgtcagctgtaataaactcaaagcagtag
gcagccttgcagcctgaatccattgcttacataggtggactttctcataa
tatctttcagcaggaatagcagaactgtatattccatttggggatgtgaa
gtggaacctttttcagtgtgggtatccatggaacttcaccagat
gaattcattgtgttgcataatcactccattttgcatttattacaatgtaa
ggttcctaaaatcacatatatctgtctgattgtctctctgcctgccttct
tgcctgtcattctatttatctatccatctttctttcactcataaatacac
ctttctttttccatttcttcctctctcttccttctttcttttctttctaa
cttccttattacgctccctccccatgtttttcccctttatgtgttacata
tgtggacatcttaaaactgaattcttcacatatttaaatcttatcatcta
tttattctatgatgatgtaatactgaggttgtttagatctgtgggatata
ccccaaataattgttgttctctcatatgccttataccaagcagaatcaag
cctctacatagcaaatgggtctagaaaacatgtttttaaactagaacttg
aaggatgttcttaaatattatttttcaaatgacctcataaaaatataaaa
aataaatgatcatcacacagtgtttatgacacattttcatcaaacaataa
tcatcacccagtggccatcgttcaatggtcatcacaaagtgatcatcata
cagtaatgattatacaaaaatgattttattgaagattctaggtaacaggc
aggggatagagtcaaagcagtaaagacagaccaggtcattgcttctaatg
atgaggactacctggaaatatttacacagaggaaaggcatgtcctttctc
aggctttataattatctttttaccatttgtgtggaaaggatcttttgaga
gtaggtcggggaagcagccttgggaaatggcatgtcagcaaaacaagatg
agccaatgttttattttatttagcattttccattctacttgctattagag
ctactgttcatagtagtctagaaaacaccttcttttagaacagttcagtt
ctatttttctccattgtgttacagtaagtgtcttctatttcctttactgt
gttcttagtttccagttctaaacggcttctatgcatatgatatgtctcat
cctccttctctcaaattataatagtgtgatatgttcttaaatcttggctg
gaatgacatacatctgggttaaacaaattcttgttccccccccatacata
gatgaatcatttaaggcattctcatctcagactggtgactgagttatacc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26297741_26298942
seq2: B6Ng01-116A09.b_50_1243 (reverse)

seq1  ATCTGGTGGAAGTTCCCATGTGAT-CACACACTGGAAAAATGTTCCACTT  49
      ||||||| |||||| ||||| ||| | |||||| |||||| |||||||||
seq2  ATCTGGT-GAAGTT-CCATG-GATACCCACACT-GAAAAAGGTTCCACTT  46

seq1  CTACATCACCAAATGG-ATATACAG-TCTGCTATTCCTGCTGAAAGATA-  96
      | ||||| |||||||| |||||||| ||||||||||||||||||||||| 
seq2  C-ACATCCCCAAATGGAATATACAGTTCTGCTATTCCTGCTGAAAGATAT  95

seq1  TATGAGAAAGTCAACCTAATGTAAGCAAATGGGATTTCAGGCTGCAAGGC  146
      |||||||||||| |||| |||||||| |||||   |||||||||||||||
seq2  TATGAGAAAGTCCACCT-ATGTAAGC-AATGG--ATTCAGGCTGCAAGGC  141

seq1  TGCCTTACCTGCTTTGAGTTTATTACAGCTGACACAAAGGAAACCACTTT  196
      |||||   |||||||||||||||||||||||||||||||| | |||||||
seq2  TGCCT--ACTGCTTTGAGTTTATTACAGCTGACACAAAGG-ATCCACTTT  188

seq1  CCCTCTTTGGAAGACTCTCCATCATAGGATATGTAACATCTGCATGAACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTGGAAGACTCTCCATCATAGGATATGTAACATCTGCATGAACT  238

seq1  TAAGTTTCAGATGAGAAGAGATGTACAATACTTTACTAAAATCCTGATGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCAGATGAGAAGAGATGTACAATACTTTACTAAAATCCTGATGC  288

seq1  TCTCAGTGGAACTATCTGAGGCAAACTCTTCTTGTGAAAATTAGAATCGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGGAACTATCTGAGGCAAACTCTTCTTGTGAAAATTAGAATCGA  338

seq1  CTTGGCTACTACAATCCTGAAACTTCATTCCACTTTTGTGTATCTATATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTACTACAATCCTGAAACTTCATTCCACTTTTGTGTATCTATATC  388

seq1  TAGGTTAGCAAAGCAAGAGTCTTTTGTTTATATTCCATATCTTCTTAACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGCAAAGCAAGAGTCTTTTGTTTATATTCCATATCTTCTTAACT  438

seq1  TTATAAATCTGTCCCTTTGCTCATTTTACATTATCCATGGTGAAAGATTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCTGTCCCTTTGCTCATTTTACATTATCCATGGTGAAAGATTG  488

seq1  ATCCCTGTCTTCAGCAAAGAACTTCTAAACATGACAGAACAAAGGGAGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTCTTCAGCAAAGAACTTCTAAACATGACAGAACAAAGGGAGTG  538

seq1  AGGTTATTTACAGCTAAACTTAACAAGTCTGCAAAGCACTTGAAACAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTTACAGCTAAACTTAACAAGTCTGCAAAGCACTTGAAACAAAG  588

seq1  AGACAAGATTGGCATAATCCTATTTTCCATCAGTAAGTGCATCAGGAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGATTGGCATAATCCTATTTTCCATCAGTAAGTGCATCAGGAACT  638

seq1  GAATCAAATAAGGTCATGGATGACTATATTTTAAACAGAACTATGTATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAATAAGGTCATGGATGACTATATTTTAAACAGAACTATGTATCT  688

seq1  CCTAGGCTTAGCAGGGGAGAGATTGGTGACTATCATTCTGGGATGCCATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTTAGCAGGGGAGAGATTGGTGACTATCATTCTGGGATGCCATG  738

seq1  GCTAGCAGCCATAACTTTTGGTTGTTATGGATAGAACATTGAGTACTACC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAGCCATAACTTTTGGTTGTTATGGATAGAACATTGAGTACTACC  788

seq1  CAATGCAGAAAGAGTTCATTAGGAAAATGTTAGGGACTGTCATTGTAGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAGAAAGAGTTCATTAGGAAAATGTTAGGGACTGTCATTGTAGGT  838

seq1  AAACATGACTGGTAATGTCCATGGATTGTGAAACTTAAATTGACATTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGACTGGTAATGTCCATGGATTGTGAAACTTAAATTGACATTTTT  888

seq1  TTTTGTCACATTATATGAGTAGGTGGGCCAGAAGATCTCTGTGTTCTCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCACATTATATGAGTAGGTGGGCCAGAAGATCTCTGTGTTCTCTC  938

seq1  TTAGACACTTACACTAAAGTAAAGGGAGCTGGCAGTGGATGTGGAAGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACACTTACACTAAAGTAAAGGGAGCTGGCAGTGGATGTGGAAGTGT  988

seq1  AAGACCCCCTTTTGGGGACCCCCACTCTAGTCTTGGGAGTGAGAGAGCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCCCTTTTGGGGACCCCCACTCTAGTCTTGGGAGTGAGAGAGCAC  1038

seq1  CCAAAGAAACACAAGAATCCATCTTGCTGTAATGAGGCAGTTTAATGACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAACACAAGAATCCATCTTGCTGTAATGAGGCAGTTTAATGACA  1088

seq1  GAGCTCTGGGCCGACATGTATCCCACACAGGAGATAACGGATGCCGGCCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGGGCCGACATGTATCCCACACAGGAGATAACGGATGCCGGCCA  1138

seq1  CAAGGCTCGAAAGCTAGGGGTGTTTATGGGGTAAGGGGCTTAGGAGTGTG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCGAAAGCTAGGGGTGTTTATGGGGTAAGGGGCTTAGGAGTGTG  1188

seq1  GAATTC  1202
      ||||||
seq2  GAATTC  1194

seq1: chr13_26184618_26185860
seq2: B6Ng01-116A09.g_68_1268

seq1  GAATTCATTGTGTTGCATAATCACTCCATTTTGCATTTATTACAATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGTTGCATAATCACTCCATTTTGCATTTATTACAATGTAA  50

seq1  GGTTCCTAAAATCACATATATCTGTCTGATTGTCTCTCTGCCTGCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTAAAATCACATATATCTGTCTGATTGTCTCTCTGCCTGCCTTCT  100

seq1  TGCCTGTCATTCTATTTATCTATCCATCTTTCTTTCACTCATAAATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCATTCTATTTATCTATCCATCTTTCTTTCACTCATAAATACAC  150

seq1  CTTTCTTTTTCCATTTCTTCCTCTCTCTTCCTTCTTTCTTTTCTTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTCCATTTCTTCCTCTCTCTTCCTTCTTTCTTTTCTTTCTAA  200

seq1  CTTCCTTATTACGCTCCCTCCCCATGTTTTTCCCCTTTATGTGTTACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTATTACGCTCCCTCCCCATGTTTTTCCCCTTTATGTGTTACATA  250

seq1  TGTGGACATCTTAAAACTGAATTCTTCACATATTTAAATCTTATCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACATCTTAAAACTGAATTCTTCACATATTTAAATCTTATCATCTA  300

seq1  TTTATTCTATGATGATGTAATACTGAGGTTGTTTAGATCTGTGGGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTATGATGATGTAATACTGAGGTTGTTTAGATCTGTGGGATATA  350

seq1  CCCCAAATAATTGTTGTTCTCTCATATGCCTTATACCAAGCAGAATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATAATTGTTGTTCTCTCATATGCCTTATACCAAGCAGAATCAAG  400

seq1  CCTCTACATAGCAAATGGGTCTAGAAAACATGTTTTTAAACTAGAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACATAGCAAATGGGTCTAGAAAACATGTTTTTAAACTAGAACTTG  450

seq1  AAGGATGTTCTTAAATATTATTTTTCAAATGACCTCATAAAAATATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTTCTTAAATATTATTTTTCAAATGACCTCATAAAAATATAAAA  500

seq1  AATAAATGATCATCACACAGTGTTTATGACACATTTTCATCAAACAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGATCATCACACAGTGTTTATGACACATTTTCATCAAACAATAA  550

seq1  TCATCACCCAGTGGCCATCGTTCAATGGTCATCACAAAGTGATCATCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCCAGTGGCCATCGTTCAATGGTCATCACAAAGTGATCATCATA  600

seq1  CAGTAATGATTATACAAAAATGATTTTATTGAAGATTCTAGGTAACAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGATTATACAAAAATGATTTTATTGAAGATTCTAGGTAACAGGC  650

seq1  AGGGGATAGAGTCAAAGCAGTAAAGACAGACCAGGTCATTGCTTCTAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATAGAGTCAAAGCAGTAAAGACAGACCAGGTCATTGCTTCTAATG  700

seq1  ATGAGGACTACCTGGAAATATTTACACAGAGGAAAGGCATGTCCTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGACTACCTGGAAATATTTACACAGAGGAAAGGCATGTCCTTTCTC  750

seq1  AGGCTTTATAATTATCTTTTTACCATTTGTGTGGAAAGGATCTTTTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTATAATTATCTTTTTACCATTTGTGTGGAAAGGATCTTTTGAGA  800

seq1  GTAGGTCGGGGAAGCAGCCTTGGGAAAATGGCATGTCAGCAAAACAAGAT  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGGTCGGGGAAGCAGCCTTGGG-AAATGGCATGTCAGCAAAACAAGAT  849

seq1  GAGCCAATGTTTTATTTTATTTAGCATTTTCCATTCTACTTGCTATTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATGTTTTATTTTATTTAGCATTTTCCATTCTACTTGCTATTAGA  899

seq1  GCTACTGTTCATTAGTAGTCTAGAAAACACCTTCTTTTTAGAACAGTTCA  950
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  GCTACTGTTCA-TAGTAGTCTAGAAAACACCTTC-TTTTAGAACAGTTCA  947

seq1  GGTTCTATTTTTCTTCCATTGTGTTACAGTTAAGTGTC-TCTATTTCCTT  999
       |||||||||||| ||||||||||||||| |||||||| |||||||||||
seq2  -GTTCTATTTTTC-TCCATTGTGTTACAG-TAAGTGTCTTCTATTTCCTT  994

seq1  TACTGTGGTTCTTAGTTTCCAGTTCTAAACGGCTTCCTATGCATATGATA  1049
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  TACTGT-GTTCTTAGTTTCCAGTTCTAAACGGCTT-CTATGCATATGATA  1042

seq1  TGTCTCATCCTCCCTTCTCCTCAAATTTATATCAGTGTGATATGTTCTTA  1099
      ||||||||||| |||||| |||||| |||||  |||||||||||||||||
seq2  TGTCTCATCCT-CCTTCT-CTCAAA-TTATAATAGTGTGATATGTTCTTA  1089

seq1  AATATCTTTGGCTGG-ATGACATACATCATTGGTTTTAACAATATTCCTT  1148
      |||    |||||||| ||||||||||||  ||| || ||||| ||| |||
seq2  AAT---CTTGGCTGGAATGACATACATC--TGGGTTAAACAA-ATT-CTT  1132

seq1  GTTCCCCCCCCCAAATAAAACAATAAGATGAATACAATTTAAAAGCTCAT  1198
      |||||||||||      | |||   ||||||||   ||||||     |||
seq2  GTTCCCCCCCC------ATACA--TAGATGAAT--CATTTAA---GGCAT  1169

seq1  TTTCTTTCATTTCTTCATGACATGTGGTGAACTGAGTTATTACCA  1243
          | |||| ||     |||   ||||| ||||||||| |||||
seq2  ----TCTCATCTC----AGAC---TGGTG-ACTGAGTTA-TACCA  1201