BAC Information

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BAC

Clone NameB6Ng01-116A17
Chromosome13 (Build37)
Map Location 71,930,376 - 72,070,824
singlet/doubletdoublet
Overlap genenone
Upstream geneAdamts16, 8030423J24Rik, LOC627230, LOC100042360
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116A17.bB6Ng01-116A17.g
ACCDH921145DH921146
length1,1381,122
definitionDH921145|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A17, 5' end.DH921146|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,930,376 - 71,931,006)(72,069,689 - 72,070,824)
sequence
gaattccctaagaagcaagagatgaccgtgtaagtcctcagaacgtcttc
tccctgtgacgctcactctgaagctgtcatttgctttaggagtacgatgg
cttactccataccaaggattgaaaagattttgacttgtgatattaccaaa
ccattcatggtgtcaaaagcaatgtttgtgccagaacataatgatggaaa
ctggtctatagatttagcatttttagacattcatttaaatgagttaaact
tgaaccttcaaagtgtagctcagtgcaatgtataaaatcagaatagtagt
ccaaacagcggaagctacagcaaggtcagaggaaagcaatattacaccct
cgctagtgacagccctgtgaaaagctttgctgtccatttgacatgagaat
gtggaaatgaatttcaagatctgagggaaaataatgacaagttttgtgta
tttaagactctgttttcagtcagcataaatatattgcctgctagttctca
atcaggaggcatagagcagtgatttgacattagacttaaaagtgttgctc
acatctctttactagacttttcaggtcctctctccccttcttcacagtca
aagacatgcatgtgtgcatgcatgcatacctacctgctattttcttctgc
tagttcctacatctgggaggaactattttcaagactggagtacagaaaca
gtaaatgaggaatgtgacctgcacctgttcccactgcgccaggtgtagga
acactagcttcttaaggctacatacctaggttttagattgctctcttttc
tttcatttaagacttagaactccccacgtttgttacttagatgtgtgatt
attattactgatcccaaactggggaccctgccagtgattttatagaaaca
ccaattagtgtgtggcatatttagactatgtaaagggctttccacttatc
tgtgttggaagatatcatacccttgtgcacagaccttttattttctttag
cagttttcagttctgtgtcaatgcagtgggcacattctgacagggagtct
cttctaggcaaggcaggtgcattatatcaagaatttagaagatttgacag
cagatcttatttatgggttcactcatgataccaggttt
cactgtaagtcccatgactgtgagctgccagcagttgcctcttaaaggaa
atggcacatatttcaccatgagacttatctgctctttaaatgaaagagga
atcagcctttaactgaaaccatcggcctgagccatgacagtcttttattc
attacacacagcatagccccatgtcaaagtgctgtaatgggatggcattg
ctgctgagccctgaggggatgagcggatcagtaggttgggaccttcgtgg
atgtgattggggcctcagagtgacaaaaggggctgtctggctcttcagtg
atatacccagatgctagccaacaaagaaccatgagaaacatctcatcaga
catagctggtaaagtactgagacctcagccccagagatgtgcaatacaga
cattgctcttagttcaagtgctgcttctgagtagggcttgaagtgacagc
ggtcctgagatatccttagtaactcagttcccaggaagatggatggtttc
tacacacttcgtctctgggaggcagataccgttaagtcccatgttacagg
agaggaactgaaatgtggaggagctgggcagctcttgctagaccggattt
cctgacagcacactggggagaagcaaaggacatgagccgtcaagatcatg
cacaggtacgactccatgcttggggccccaagtcatcaaagggttcacac
acatggctccaatctcagggtgtcaggctgtgaagatggagcactaccga
atcttactctgatgtccttacatctcgcttcagcagctgactagcaaagc
cataccacacttggacagcgctccgtgttcaggtgtgaaagccaccacga
gtacgttcaaatatggctctaagttcatggcagagcagcagtgagcacca
cacacctggcagaagcccgtgcttaggatcatgtgctgtctggctaattc
caagtcctttcttcctgactgcctggacagctccggctgccttctgcgtt
atacagaacacttggcttcactttttcccaggactggtgagaattaatac
agagaggtgaaaggtgcctttgggataagcagcctgatggtagaaatcag
cctctgagctcgaatgacttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71930376_71931006
seq2: B6Ng01-116A17.b_557_1181

seq1  GAGCAGTGATTTGACATTAGACTTAAAAGTGTTGCTCACATCTCTTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGATTTGACATTAGACTTAAAAGTGTTGCTCACATCTCTTTACT  50

seq1  AGACTTTTCAGGTCCTCTCTCCCCTTCTTCACAGTCAAAGACATGCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCAGGTCCTCTCTCCCCTTCTTCACAGTCAAAGACATGCATGT  100

seq1  GTGCATGCATGCATACCTACCTGCTATTTTCTTCTGCTAGTTCCTACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCATGCATACCTACCTGCTATTTTCTTCTGCTAGTTCCTACATC  150

seq1  TGGGAGGAACTATTTTCAAGACTGGAGTACAGAAACAGTAAATGAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAACTATTTTCAAGACTGGAGTACAGAAACAGTAAATGAGGAAT  200

seq1  GTGACCTGCACCTGTTCCCACTGCGCCAGGTGTAGGAACACTAGCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGCACCTGTTCCCACTGCGCCAGGTGTAGGAACACTAGCTTCTT  250

seq1  AAGGCTACATACCTAGGTTTTAGATTGCTCTCTTTTCTTTCATTTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTACATACCTAGGTTTTAGATTGCTCTCTTTTCTTTCATTTAAGAC  300

seq1  TTAGAACTCCCCACGTTTGTTACTTAGATGTGTGATTATTATTACTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTCCCCACGTTTGTTACTTAGATGTGTGATTATTATTACTGATC  350

seq1  CCAAACTGGGGACCCTGCCAGTGATTTTATAGAAACACCAATTAGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGGGGACCCTGCCAGTGATTTTATAGAAACACCAATTAGTGTGT  400

seq1  GGCATATTTAGACTATGTAAAGGGCTTTCCACTTATCTGTGTTGGAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATTTAGACTATGTAAAGGGCTTTCCACTTATCTGTGTTGGAAGAT  450

seq1  ATCATACCCTTGTGCACAGACCCTTTTATTTTCTTTAGCAGGTTTTCCAG  500
      |||||||||||||||||||| ||||||||||||||||||||  ||| |||
seq2  ATCATACCCTTGTGCACAGA-CCTTTTATTTTCTTTAGCAG--TTTTCAG  497

seq1  TTCTGTGTCAATGCAGTGGGCACATTCTGACAAGGGAGTCCTCTCTAGGC  550
      ||||||||||||||||||||||||||||||| ||||||||   |||||||
seq2  TTCTGTGTCAATGCAGTGGGCACATTCTGAC-AGGGAGTCTCTTCTAGGC  546

seq1  AAAGGGCAGGTGGCATTATATCAAG-ATTTAGAGATTTTGACAGCAAGAT  599
      ||  ||||||| ||||||||||||| |||||||   ||||||||| ||||
seq2  AA--GGCAGGT-GCATTATATCAAGAATTTAGAAGATTTGACAGC-AGAT  592

seq1  CT--ATTATGGG-TCACTCATGGATCACCAGGTTT  631
      ||   ||||||| |||||||| ||| |||||||||
seq2  CTTATTTATGGGTTCACTCAT-GAT-ACCAGGTTT  625

seq1: chr13_72069689_72070824
seq2: B6Ng01-116A17.g_76_1197 (reverse)

seq1  GCAAGTCCATCTGAGCTCAGGAGGCCTGATTTCTCCCACTCAGGCTGCTT  50
      |||||| |||  ||||||| |||| ||||||||| ||| ||||||||| |
seq2  GCAAGT-CATTCGAGCTCA-GAGG-CTGATTTCTACCA-TCAGGCTGC-T  45

seq1  TACCCCAAAGGCACCTTTCAACTCTCTGTATTAATTCTCACCAGTCCTGG  100
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATCCCAAAGGCACCTTTCACCTCTCTGTATTAATTCTCACCAGTCCTGG  95

seq1  GGAAAAGTGAAGCCAAGTGTTTTCTGTTAATAACGCAGGAAGGCAGGCGG  150
      | |||||||||||||||||  ||||||  |||||||| ||||||| || |
seq2  GAAAAAGTGAAGCCAAGTG--TTCTGT--ATAACGCA-GAAGGCA-GCCG  139

seq1  GAGCTGTCCAGGCAGTCCAGGAAGAAAGGAACTTGGAATTAGCCAGACAG  200
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  GAGCTGTCCAGGCAGT-CAGGAAGAAAGG-ACTTGGAATTAGCCAGACAG  187

seq1  CACATGATCCTAAGCACGGGCTTCTGCCAGGTGTGTGGTGCTCACTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACATGATCCTAAGCACGGGCTTCTGCCAGGTGTGTGGTGCTCACTG-CT  236

seq1  GCTCTGCCATGAACTTAGAGCCATATTTGAACGTACTCGTGGTGGCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCATGAACTTAGAGCCATATTTGAACGTACTCGTGGTGGCTTTC  286

seq1  ACACCTGAACACGGAGCGCTGTCCAAGTGTGGTATGGCTTTGCTAGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAACACGGAGCGCTGTCCAAGTGTGGTATGGCTTTGCTAGTCAG  336

seq1  CTGCTGAAGCGAGATGTAAGGACATCAGAGTAAGATTCGGTAGTGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAAGCGAGATGTAAGGACATCAGAGTAAGATTCGGTAGTGCTCCA  386

seq1  TCTTCACAGCCTGACACCCTGAGATTGGAGCCATGTGTGTGAACCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGCCTGACACCCTGAGATTGGAGCCATGTGTGTGAACCCTTTG  436

seq1  ATGACTTGGGGCCCCAAGCATGGAGTCGTACCTGTGCATGATCTTGACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGGGGCCCCAAGCATGGAGTCGTACCTGTGCATGATCTTGACGG  486

seq1  CTCATGTCCTTTGCTTCTCCCCAGTGTGCTGTCAGGAAATCCGGTCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCCTTTGCTTCTCCCCAGTGTGCTGTCAGGAAATCCGGTCTAGC  536

seq1  AAGAGCTGCCCAGCTCCTCCACATTTCAGTTCCTCTCCTGTAACATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGCCCAGCTCCTCCACATTTCAGTTCCTCTCCTGTAACATGGGA  586

seq1  CTTAACGGTATCTGCCTCCCAGAGACGAAGTGTGTAGAAACCATCCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACGGTATCTGCCTCCCAGAGACGAAGTGTGTAGAAACCATCCATCT  636

seq1  TCCTGGGAACTGAGTTACTAAGGATATCTCAGGACCGCTGTCACTTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAACTGAGTTACTAAGGATATCTCAGGACCGCTGTCACTTCAAG  686

seq1  CCCTACTCAGAAGCAGCACTTGAACTAAGAGCAATGTCTGTATTGCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCAGAAGCAGCACTTGAACTAAGAGCAATGTCTGTATTGCACAT  736

seq1  CTCTGGGGCTGAGGTCTCAGTACTTTACCAGCTATGTCTGATGAGATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGCTGAGGTCTCAGTACTTTACCAGCTATGTCTGATGAGATGTT  786

seq1  TCTCATGGTTCTTTGTTGGCTAGCATCTGGGTATATCACTGAAGAGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGGTTCTTTGTTGGCTAGCATCTGGGTATATCACTGAAGAGCCAG  836

seq1  ACAGCCCCTTTTGTCACTCTGAGGCCCCAATCACATCCACGAAGGTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCTTTTGTCACTCTGAGGCCCCAATCACATCCACGAAGGTCCCA  886

seq1  ACCTACTGATCCGCTCATCCCCTCAGGGCTCAGCAGCAATGCCATCCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGATCCGCTCATCCCCTCAGGGCTCAGCAGCAATGCCATCCCAT  936

seq1  TACAGCACTTTGACATGGGGCTATGCTGTGTGTAATGAATAAAAGACTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACTTTGACATGGGGCTATGCTGTGTGTAATGAATAAAAGACTGT  986

seq1  CATGGCTCAGGCCGATGGTTTCAGTTAAAGGCTGATTCCTCTTTCATTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTCAGGCCGATGGTTTCAGTTAAAGGCTGATTCCTCTTTCATTTA  1036

seq1  AAGAGCAGATAAGTCTCATGGTGAAATATGTGCCATTTCCTTTAAGAGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGATAAGTCTCATGGTGAAATATGTGCCATTTCCTTTAAGAGGC  1086

seq1  AACTGCTGGCAGCTCACAGTCATGGGACTTACAGTG  1136
      ||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGGCAGCTCACAGTCATGGGACTTACAGTG  1122