BAC Information

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BAC

Clone NameB6Ng01-116C23
Chromosome13 (Build37)
Map Location 37,971,459 - 38,114,264
singlet/doubletdoublet
Overlap geneRreb1, Ssr1, Cage1
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
Downstream geneRiok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116C23.bB6Ng01-116C23.g
ACCDH921245DH921246
length1,022656
definitionDH921245|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C23, 5' end.DH921246|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,113,242 - 38,114,264)(37,971,459 - 37,972,110)
sequence
gaattctaacacaatccccagagtttcacccagtctagtgatggacgctc
agactggacactcagagtgttcgtaggaagaattattttcaaaagaggga
aacagaaaggaaacacactgcaggcttagggacatttctacaggttgctg
agtgcttgccttaaagaacaataattcccggcttcttgtcatgactttgg
tagaggtgacgattaatctgggaatttgatgggtacccatgaccaatgtc
tagaagactcctttgaaagaggatttctttctttcttttttcctttttgg
tttggtttggtttaattgggaattgtagggcatgtttggtttattttagc
tggctgccaaaggatttttgaagtgtggttccaaatctgccttagcaatc
aacaaaagaaaattgctctcttccttacaaagcaaagcctgtgctggagc
agatattagaattgtaaagcactgaaaacaacattagaaccttctgtcaa
cacagttggagaaaccactttttttttcttttcttttttctttttttttt
tttttttttttgaggcagggtttctctgtatagccctagctgtcctggaa
ctcactttgtagaccaggctggcctcaaactgagaaatccacctgcctct
gcctcccgagtgctgagattaaaggcgtgtgccaccacgaccggcaagaa
accacatttttaaaaaatgtcattctacagtatggtaggaaaagaaaaag
tgaagttcctagactaatcttgaccaaagaattgttttaacatttccaaa
ttcacagtcttattgttctttctttactctaggtccatattctcaaaata
tggtctgaaagcatctatgacatcaacagtagttttgtagtaatgctaga
acattagctcggtgaggtggagtgatgccactgccttccatctctgcatt
cttttttggtgctttcagtagtcattctgagcagagcatcagaggcgctg
tgatgagggccccacagaaaac
gaattcagttctttgtaaaagaggtatctgttttgggtggggcctgtaag
atgtgaactgccgtttagaagcctgggcatgttcggcacctggtagggta
ggagatcaacctaaagcaaatgagcctgtgtactttggcgacataggctt
ctttcagtggagcacagcccttctcagcagcaagaccaaacctaatcctg
caagccccacccctgggagtacagttgccatgaactaatcatccttccaa
cggtcaaggccagggcaggaccagagcctcagacttccttcagtactgca
ttaaaaataaatctccccaaacctggacttcggctgggccacagtagcct
cttggtactcagtatacgccacgatttcctgacatgcagtgtcttgggag
ggggcaagtcttgctccattgttacatttgcttgcaagtcatctttggtt
tgttagtgtatataatcaatactaaccaaccacttgtatatcagagtatt
tgtttgccttcacacatatggtggtgagttctttttcagagggaaaattg
gggagatggggggaggaaagaccatctgttctgtgcacagaggggtagcc
catcaggtccttgggagctcagacacgtcactttccccctgggcacagtc
attctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38113242_38114264
seq2: B6Ng01-116C23.b_47_1068 (reverse)

seq1  GTTTTCTGTTGGGGCCCTCATCACAGCGGCTCTGATGCTCTGCTCCAGAA  50
      |||||||| ||||||||||||||||||| ||||||||||||||| |||||
seq2  GTTTTCTG-TGGGGCCCTCATCACAGCGCCTCTGATGCTCTGCT-CAGAA  48

seq1  TGACTACTGAAAGCACCAAAAAAG-ATGCAGAGATGGAAGGCAGTGGCAT  99
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACTACTGAAAGCACCAAAAAAGAATGCAGAGATGGAAGGCAGTGGCAT  98

seq1  CACTCCACCTCACCGAGCTAATGTTCTAGCATTACTACAAAACTACTGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACCTCACCGAGCTAATGTTCTAGCATTACTACAAAACTACTGTT  148

seq1  GATGTCATAGATGCTTTCAGACCATATTTTGAGAATATGGACCTAGAGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATAGATGCTTTCAGACCATATTTTGAGAATATGGACCTAGAGTA  198

seq1  AAGAAAGAACAATAAGACTGTGAATTTGGAAATGTTAAAACAATTCTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAACAATAAGACTGTGAATTTGGAAATGTTAAAACAATTCTTTG  248

seq1  GTCAAGATTAGTCTAGGAACTTCACTTTTTCTTTTCCTACCATACTGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGATTAGTCTAGGAACTTCACTTTTTCTTTTCCTACCATACTGTAG  298

seq1  AATGACATTTTTTAAAAATGTGGTTTCTTGCCGGTCGTGGTGGCACACGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTTTTTAAAAATGTGGTTTCTTGCCGGTCGTGGTGGCACACGC  348

seq1  CTTTAATCTCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTCAGTTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCTCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTCAGTTTGA  398

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAGGGCTATACAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAGGGCTATACAGA  448

seq1  GAAACCCTGCCTCAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGCCTCAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAAGAAA  498

seq1  AAAAAAGTGGTTTCTCCAACTGTGTTGACAGAAGGTTCTAATGTTGTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTGGTTTCTCCAACTGTGTTGACAGAAGGTTCTAATGTTGTTTT  548

seq1  CAGTGCTTTACAATTCTAATATCTGCTCCAGCACAGGCTTTGCTTTGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTACAATTCTAATATCTGCTCCAGCACAGGCTTTGCTTTGTAA  598

seq1  GGAAGAGAGCAATTTTCTTTTGTTGATTGCTAAGGCAGATTTGGAACCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGCAATTTTCTTTTGTTGATTGCTAAGGCAGATTTGGAACCAC  648

seq1  ACTTCAAAAATCCTTTGGCAGCCAGCTAAAATAAACCAAACATGCCCTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAAATCCTTTGGCAGCCAGCTAAAATAAACCAAACATGCCCTAC  698

seq1  AATTCCCAATTAAACCAAACCAAACCAAAAAGGAAAAAAGAAAGAAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAATTAAACCAAACCAAACCAAAAAGGAAAAAAGAAAGAAAGAA  748

seq1  ATCCTCTTTCAAAGGAGTCTTCTAGACATTGGTCATGGGTACCCATCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTTCAAAGGAGTCTTCTAGACATTGGTCATGGGTACCCATCAAA  798

seq1  TTCCCAGATTAATCGTCACCTCTACCAAAGTCATGACAAGAAGCCGGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGATTAATCGTCACCTCTACCAAAGTCATGACAAGAAGCCGGGAA  848

seq1  TTATTGTTCTTTAAGGCAAGCACTCAGCAACCTGTAGAAATGTCCCTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTCTTTAAGGCAAGCACTCAGCAACCTGTAGAAATGTCCCTAAG  898

seq1  CCTGCAGTGTGTTTCCTTTCTGTTTCCCTCTTTTGAAAATAATTCTTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTGTGTTTCCTTTCTGTTTCCCTCTTTTGAAAATAATTCTTCCT  948

seq1  ACGAACACTCTGAGTGTCCAGTCTGAGCGTCCATCACTAGACTGGGTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACACTCTGAGTGTCCAGTCTGAGCGTCCATCACTAGACTGGGTGAA  998

seq1  ACTCTGGGGATTGTGTTAGAATTC  1023
      ||||||||||||||||||||||||
seq2  ACTCTGGGGATTGTGTTAGAATTC  1022

seq1: chr13_37971459_37972110
seq2: B6Ng01-116C23.g_68_723

seq1  GAATTCAGTTCTTTGTAAAAGAGGTATCTGTTTTGGGTGGGGCCTGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTTTGTAAAAGAGGTATCTGTTTTGGGTGGGGCCTGTAAG  50

seq1  ATGTGAACTGCCGTTTAGAAGCCTGGGCATGTTCGGCACCTGGTAGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACTGCCGTTTAGAAGCCTGGGCATGTTCGGCACCTGGTAGGGTA  100

seq1  GGAGATCAACCTAAAGCAAATGAGCCTGTGTACTTTGGCGACATAGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCAACCTAAAGCAAATGAGCCTGTGTACTTTGGCGACATAGGCTT  150

seq1  CTTTCAGTGGAGCACAGCCCTTCTCAGCAGCAAGACCAAACCTAATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTGGAGCACAGCCCTTCTCAGCAGCAAGACCAAACCTAATCCTG  200

seq1  CAAGCCCCACCCCTGGGAGTACAGTTGCCATGAACTAATCATCCTTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCACCCCTGGGAGTACAGTTGCCATGAACTAATCATCCTTCCAA  250

seq1  CGGTCAAGGCCAGGGCAGGACCAGAGCCTCAGACTTCCTTCAGTACTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAAGGCCAGGGCAGGACCAGAGCCTCAGACTTCCTTCAGTACTGCA  300

seq1  TTAAAAATAAATCTCCCCAAACCTGGACTTCGGCTGGGCCACAGTAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAATCTCCCCAAACCTGGACTTCGGCTGGGCCACAGTAGCCT  350

seq1  CTTGGTACTCAGTATACGCCACGATTTCCTGACATGCAGTGTCTTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTACTCAGTATACGCCACGATTTCCTGACATGCAGTGTCTTGGGAG  400

seq1  GGGGCAAGTCTTGCTCCATTGTTACATTTGCTTGCAAGTCATCTTTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGTCTTGCTCCATTGTTACATTTGCTTGCAAGTCATCTTTGGTT  450

seq1  TGTTAGTGTATATAATCAATACTAACCAACCACTTGTATATCAGAGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTGTATATAATCAATACTAACCAACCACTTGTATATCAGAGTATT  500

seq1  TGTTTGCCTTCACACATATGGTGGTGAGTTCTTTTTCAGAGGGAAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTCACACATATGGTGGTGAGTTCTTTTTCAGAGGGAAAATTG  550

seq1  GGGAGATGGGGGGAGGAAAGACCATCTGTTCTGTGCACAGA-GGGTAGCC  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGAGATGGGGGGAGGAAAGACCATCTGTTCTGTGCACAGAGGGGTAGCC  600

seq1  CATCAGGTCCTTGGGAGCTCAGACACGTCACTT--CCCCT-GGCACAGTC  646
      |||||||||||||||||||||||||||||||||  ||||| |||||||||
seq2  CATCAGGTCCTTGGGAGCTCAGACACGTCACTTTCCCCCTGGGCACAGTC  650

seq1  ATTCTC  652
      ||||||
seq2  ATTCTC  656