BAC Information

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BAC

Clone NameB6Ng01-116D17
Chromosome13 (Build37)
Map Location 20,052,238 - 20,053,288
singlet/doubletsinglet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
Downstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386, Aoah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116D17.bB6Ng01-116D17.g
ACCDH921281DH921282
length1,0551,103
definitionDH921281|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D17, 5' end.DH921282|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgctgagttttgttcttatttactctccttgcaatcattaca
gagaaatttatattatattatttcttacatttcttatagttctatattgg
aacttgtacatctcaagttatacctttgttggatcagttttctatcagct
atactctttcatgtgaagtatttgtactattcaagttgaactagatggct
gtaggttgagctgttgttcctcgtttatgcactagaactatggcttaata
gctaaacccttagtcttcctgcttaggcacaaaccatgaatactacttcc
acttcaaatgtgcaatagctgtaaaaggagctgcaattgtgggacagacc
tactatacaaataccatgctaattagttgaaaaaaaatctcccttttaac
cttaatgactataggagataaaggaaccaggagagtatggtatatattaa
gatatttgtcactaaagttaggaatggaaggaaaataggttaaagatagt
gattagtattatatacattaaggaagaaaaccttagggaagataaagtat
acggaagtaagaagatgttgccttagtcaatgttctagtgctttacagag
acactatgaccatggcaactcttttttttttttttcctttttatttattt
atttatttatttattttttccattttttattaggtatttaactcatttac
atttccaatgctataccaaaagtcccccatatccacccacccccactccc
ctgcccacccactccccctttttggccctggtattcccctgtactggggc
atataaagtttgcaagtccaatgggcctctctttccagtgatggccgact
aggccatcttttgatatatatgcagctagagtcaagagctccggggtact
ggttagctcataatgttgtccacctatagggttgcagatctctttagctc
cttggctactttcttctagctcctccattggggagccctatgatccatcc
ataagctggactgtgagcatccacttctgtggtttgtggggccccggcat
tagtc
gaattctttgtttatctctgtaccccatatttaataaggttatttgtttt
gttttgttttgttttgttttgttttggagcccaaattctttagttcttta
tatatatttgataatagccccctagcagatttagaattggtaaagatctt
tttccattctgttggttgcctttgtgtcttattgaaagtatcctttgcct
tacagaagctttgcaattttatgaggtcccacttttaacttcttgatctt
acagcaccagccattgatattctgttcaggaatttttcccctgtgcccat
atctttgaggtttttccccactttctcctctataaattttagtgcctctg
gttttatgtagagttccttgatccacgtagacttgacctttgtacaagga
gataagaatggatcaacttgtattcttctacatgctaaccagcagttgag
ccagcaccatttgttgaaaaaatgctttctttattccactagatggtttt
agctaccttgtcaaagatcaagtgaccatagatgtattggttcatttctg
ggtcttcaattctatcccattgatctatctgtctctcactgtaccagttc
catgcagtttttatcacaattactctgtagtacagcttgaggtcaggaat
ggtgattctaccagaggtccctttattgttgagaatagtttttgctatcc
taggtttttgttaaaccagatgaatttgcaaatgtctcttcctaactttg
tgaagaattgagttgggattttgatgtagattgcattgaatctgtagatt
gcttttcagcaagatggccatttttagtatattaatttctgccaattcca
tgagcatgggagatcttttcattcttctgagatcttcttctatttctttc
ttcagagactttgaagttcttatcatacagatctttcacttccttagtca
cacagaggtattttaatatatttgtgatgattggtgaagggtgtggtttc
cctaatttctttctcagcctgtttattctgtgtgtaaaggaaggccaatt
attgttgattttattttatatccagctcactccctgaaggactgtaaaga
ggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20052238_20053288
seq2: B6Ng01-116D17.b_46_1100 (reverse)

seq1  GACT-ATGCCGGGG-CCCACCAAACACAGAAGTGGATGCTCACAGT-CAG  47
      |||| ||||||||| ||||| || |||||||||||||||||||||| |||
seq2  GACTAATGCCGGGGCCCCACAAACCACAGAAGTGGATGCTCACAGTCCAG  50

seq1  CTAATGGATGGATCATAGGGCT-CCCAATGGAGGAGCTAG-AGAAAGTAG  95
      || ||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  CTTATGGATGGATCATAGGGCTCCCCAATGGAGGAGCTAGAAGAAAGTAG  100

seq1  CCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAG  145
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CCAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGG-ACAACATTATGAG  149

seq1  CTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGA  199

seq1  TGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACT  249

seq1  TTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGTGGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGTGGGT  299

seq1  GGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATT  349

seq1  GGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAATAAATAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAATAAATAA  399

seq1  ATAAATAAATAAATAAAAAGGAAAAAAAAAAAAAAGAGTTGCCATGGTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAAAAGGAAAAAAAAAAAAAAGAGTTGCCATGGTCA  449

seq1  TAGTGTCTCTGTAAAGCACTAGAACATTGACTAAGGCAACATCTTCTTAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTCTGTAAAGCACTAGAACATTGACTAAGGCAACATCTTCTTAC  499

seq1  TTCCGTATACTTTATCTTCCCTAAGGTTTTCTTCCTTAATGTATATAATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTATACTTTATCTTCCCTAAGGTTTTCTTCCTTAATGTATATAATA  549

seq1  CTAATCACTATCTTTAACCTATTTTCCTTCCATTCCTAACTTTAGTGACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCACTATCTTTAACCTATTTTCCTTCCATTCCTAACTTTAGTGACA  599

seq1  AATATCTTAATATATACCATACTCTCCTGGTTCCTTTATCTCCTATAGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTAATATATACCATACTCTCCTGGTTCCTTTATCTCCTATAGTC  649

seq1  ATTAAGGTTAAAAGGGAGATTTTTTTTCAACTAATTAGCATGGTATTTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTTAAAAGGGAGATTTTTTTTCAACTAATTAGCATGGTATTTGT  699

seq1  ATAGTAGGTCTGTCCCACAATTGCAGCTCCTTTTACAGCTATTGCACATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGTCTGTCCCACAATTGCAGCTCCTTTTACAGCTATTGCACATT  749

seq1  TGAAGTGGAAGTAGTATTCATGGTTTGTGCCTAAGCAGGAAGACTAAGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGAAGTAGTATTCATGGTTTGTGCCTAAGCAGGAAGACTAAGGG  799

seq1  TTTAGCTATTAAGCCATAGTTCTAGTGCATAAACGAGGAACAACAGCTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTATTAAGCCATAGTTCTAGTGCATAAACGAGGAACAACAGCTCA  849

seq1  ACCTACAGCCATCTAGTTCAACTTGAATAGTACAAATACTTCACATGAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGCCATCTAGTTCAACTTGAATAGTACAAATACTTCACATGAAA  899

seq1  GAGTATAGCTGATAGAAAACTGATCCAACAAAGGTATAACTTGAGATGTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGCTGATAGAAAACTGATCCAACAAAGGTATAACTTGAGATGTA  949

seq1  CAAGTTCCAATATAGAACTATAAGAAATGTAAGAAATAATATAATATAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCAATATAGAACTATAAGAAATGTAAGAAATAATATAATATAAA  999

seq1  TTTCTCTGTAATGATTGCAAGGAGAGTAAATAAGAACAAAACTCAGCAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTAATGATTGCAAGGAGAGTAAATAAGAACAAAACTCAGCAAT  1049

seq1  GAATTC  1051
      ||||||
seq2  GAATTC  1055