BAC Information

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BAC

Clone NameB6Ng01-116G06
Chromosome13 (Build37)
Map Location 23,363,697 - 23,505,628
singlet/doubletdoublet
Overlap geneZfp322a
Upstream geneV1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
Downstream geneAbt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G06.bB6Ng01-116G06.g
ACCDH921400DH921401
length1,1551,096
definitionDH921400|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G06, 5' end.DH921401|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,363,697 - 23,364,856)(23,504,528 - 23,505,628)
sequence
gaattcagcgattaataaatgtggttcttaactttttcttgttaaatttc
tattataacatcaatctcatttgttcttgatctgttaagaagccattgtt
gagaagggtgtgtggtacatacctttaattgcagcactctggaggcaggg
acaagtggagctctgagttcaaggtcagcctggtctgcatagtgagttct
agttcaaccaaaaataaagagagaaatcctggagggggcaggtgacagta
aatactggcttgttaaatgtaactagttccctttatttctttttgatgtc
aagaatagtctatttgcacatctttgtttttctaagtcaattcaaatctt
gggagaagatgggcactcctctctctgtgttctcgctatctttaagacct
aaagatgttttgctccctattttcatgaacttacatatttgtggtttttt
aacattttatttattttatgtatagtgtgcctgatgttgataggtgtact
acatatgtgctgaggtgaaagagggcatcagaccccctgaaacaggagtt
acagagacgagtgagtcatgcaaccaacatatgtactgagactcaagtcc
aggtcctctgcaaaagtaaaaacatcaagtactctgatcctctgagccat
ctctccagtcccaacatttatttctttctgcatatagaaacatgcagttt
gcttatatagtggattatgttgatggattaccatatattgaaacatccct
gtatccctgggatgaagcctacttgatcatggtaaatgatcattttgatg
gtccttagattcagtttgcaagaattttattgagtatttttgcactgata
ttcataagggaaattgggtctgaagttctctttctttattgggtctttgt
gtggcttaggtatcagcataaccgtggcttcgtagaatgaattaggtagt
gttccctctgtttctattttgtggaatactttgaatatattagtattatt
tcttctttgaggtctgatagattctgcactaaaattatctggtcctgggc
tttgggggtgggaaacttttaatgactgcttctaattctttaggtgtcat
ggactatttatatggtttatctgatcctggatttaccgtgggtacctggt
gtctg
gaattcttgccttctgagacactcatgtcttcacattcaaaattattcat
aataatcaagatacaaaatcaagctactgtccatcaatggacagatgaaa
acagagcagacacacatggaacattaatgctactcagccctttataaaga
ggctctgtcacttgcaaccactagaatgaagaagaagcggagaacatgaa
gttgagtgaggtaaaccagccacagagggacaaattcaccgacaatgtgc
aatctcggtgcacaggcggtagtagtggagtggctcaccaagggctgtgg
atagagtgggacaaccaccttggttattttgatttagttacataatacaa
gtaaatacaacaaatgctaacaacaaaccagtaagtaggcatgttttgaa
tgcgtgtcctgaaactaggaaaactaggaggctgtgggtgtttccgtagt
gtagtggtcatcacgctcgcctaacacgcgagaggtccccggttcgaaac
cgggcggaaacatggttgctttttttttttttttttttttttataccact
ttctcctgtgcatttagactctcagtttacccattacacttttgagcagt
tagaagatatcagtttggacccaatgtttttagctttgactgtcatgttt
tcgtggaccctagccatgacaagtatcttgtataaggactactgaagaca
cttcgcataaaagaaaagacaaatgagttttctctccctctaccttgggg
gattagctcaaatggtagagcgctcgcttagcatgcaagaggtagtggga
tcgatgcccacatccttcagctattatgttatcttgagcaccaccacacg
gacttcaatttatgctttcttctcacatttctagcataaacgttagtgcg
cccttcaccacatttctcattttccaggtttctcaaatccaaatcatgct
gtcatgtgttcatttgacaaacgctctgagcatctcgaatttgataactc
acagacactggggtcaaaatctattcggtacaaacaggtcatcaggcttt
tctcttaaacacacgtactgaagcatccggcaccaacctcactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23363697_23364856
seq2: B6Ng01-116G06.b_47_1201

seq1  GAATTCAGCGATTAATAAATGTGGTTCTTAACTTTTTCTTGTTAAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGATTAATAAATGTGGTTCTTAACTTTTTCTTGTTAAATTTC  50

seq1  TATTATAACATCAATCTCATTTGTTCTTGATCTGTTAAGAAGCCATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAACATCAATCTCATTTGTTCTTGATCTGTTAAGAAGCCATTGTT  100

seq1  GAGAAGGGTGTGTGGTACATACCTTTAATTGCAGCACTCTGGAGGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGTGTGTGGTACATACCTTTAATTGCAGCACTCTGGAGGCAGGG  150

seq1  ACAAGTGGAGCTCTGAGTTCAAGGTCAGCCTGGTCTGCATAGTGAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGGAGCTCTGAGTTCAAGGTCAGCCTGGTCTGCATAGTGAGTTCT  200

seq1  AGTTCAACCAAAAATAAAGAGAGAAATCCTGGAGGGGGCAGGTGACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAACCAAAAATAAAGAGAGAAATCCTGGAGGGGGCAGGTGACAGTA  250

seq1  AATACTGGCTTGTTAAATGTAACTAGTTCCCTTTATTTCTTTTTGATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGCTTGTTAAATGTAACTAGTTCCCTTTATTTCTTTTTGATGTC  300

seq1  AAGAATAGTCTATTTGCACATCTTTGTTTTTCTAAGTCAATTCAAATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGTCTATTTGCACATCTTTGTTTTTCTAAGTCAATTCAAATCTT  350

seq1  GGGAGAAGATGGGCACTCCTCTCTCTGTGTTCTCGCTATCTTTAAGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGATGGGCACTCCTCTCTCTGTGTTCTCGCTATCTTTAAGACCT  400

seq1  AAAGATGTTTTGCTCCCTATTTTCATGAACTTACATATTTGTGGTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTTTGCTCCCTATTTTCATGAACTTACATATTTGTGGTTTTTT  450

seq1  AACATTTTATTTATTTTATGTATAGTGTGCCTGATGTTGATAGGTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTATTTATTTTATGTATAGTGTGCCTGATGTTGATAGGTGTACT  500

seq1  ACATATGTGCTGAGGTGAAAGAGGGCATCAGACCCCCTGAAACAGGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGCTGAGGTGAAAGAGGGCATCAGACCCCCTGAAACAGGAGTT  550

seq1  ACAGAGACGAGTGAGTCATGCAACCAACATATGTACTGAGACTCAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACGAGTGAGTCATGCAACCAACATATGTACTGAGACTCAAGTCC  600

seq1  AGGTCCTCTGCAAAAGTAAAAACATCAAGTACTCTGATCCTCTGAGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCTGCAAAAGTAAAAACATCAAGTACTCTGATCCTCTGAGCCAT  650

seq1  CTCTCCAGTCCCAACATTTATTTCTTTCTGCATATAGAAACATGCAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGTCCCAACATTTATTTCTTTCTGCATATAGAAACATGCAGTTT  700

seq1  GCTTATATAGTGGATTATGTTGATGGATTACCATATATTGAAACATCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATATAGTGGATTATGTTGATGGATTACCATATATTGAAACATCCCT  750

seq1  GTATCCCTGGGATGAAGCCTACTTGATCATGGTAAATGATCATTTTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCTGGGATGAAGCCTACTTGATCATGGTAAATGATCATTTTGATG  800

seq1  GTCCTTAGATTCAGTTTGCAAGAATTTTATTGAGTATTTTTGCACTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAGATTCAGTTTGCAAGAATTTTATTGAGTATTTTTGCACTGATA  850

seq1  TTCATAAGGGAAATT-GGTCTGAAGTTCTCTTTCTTTATTGGGTCTTTGT  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCATAAGGGAAATTGGGTCTGAAGTTCTCTTTCTTTATTGGGTCTTTGT  900

seq1  GTGGCTTAGGTATCAGCATAACCGTGGCTTCGTAGAATGAATTAGGTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTAGGTATCAGCATAACCGTGGCTTCGTAGAATGAATTAGGTAGT  950

seq1  GTTCCCTCTGTTTCTATTTTGTGGAATACTTTGAATAATATTAGTATTAT  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTCCCTCTGTTTCTATTTTGTGGAATACTTTGAAT-ATATTAGTATTAT  999

seq1  TTCTTCTTTGAAGGTTCTGATAGAATTCTGCACTAAAATTATCTGGTCCT  1049
      |||||||||||  | |||||||| ||||||||||||||||||||||||||
seq2  TTCTTCTTTGA--GGTCTGATAG-ATTCTGCACTAAAATTATCTGGTCCT  1046

seq1  GGGCTTTTGGGGGTTGGGAGACTTTTAATGACTGCTTCTATTTCTTTAGG  1099
      |||||||  |||| ||||| |||||||||||||||||||| |||||||||
seq2  GGGCTTT--GGGGGTGGGAAACTTTTAATGACTGCTTCTAATTCTTTAGG  1094

seq1  TGTCATGGGACTATTTATATTGTTTATCTGATCCT-GATTTAACGTTGGT  1148
      |||||| ||||||||||||| |||||||||||||| |||||| ||| |||
seq2  TGTCAT-GGACTATTTATATGGTTTATCTGATCCTGGATTTACCGTGGGT  1143

seq1  ACCTGGTATCTG  1160
      ||||||| ||||
seq2  ACCTGGTGTCTG  1155

seq1: chr13_23504528_23505628
seq2: B6Ng01-116G06.g_69_1164 (reverse)

seq1  CCCAGTGGAGGTTGGTGCGCGATGCTGCAGTACGGTGTGGTTTAAGAGGA  50
      |||||| |||||||||||  |||||| |||||| |||| |||||||| ||
seq2  CCCAGT-GAGGTTGGTGCCGGATGCTTCAGTAC-GTGT-GTTTAAGA-GA  46

seq1  AAAGCCTGAATGACCCTGTTTGTACCGAATAGGTTTTTGACCCAGTGTCT  100
      |||||||| |||| |||||||||||||||||| ||||   ||||||||||
seq2  AAAGCCTG-ATGA-CCTGTTTGTACCGAATAGATTTTGACCCCAGTGTCT  94

seq1  GTTGAGTTAATCAAA-TCGAGATGCTCAGAAGCGTTTGTCAAATGAACAC  149
      | |||||| |||||| ||||||||||||| ||||||||||||||||||||
seq2  G-TGAGTT-ATCAAATTCGAGATGCTCAG-AGCGTTTGTCAAATGAACAC  141

seq1  ATGACAGCATGATGTGGATTTGAGAAA-CTGGAAAATGAG-AATGTGGTG  197
      ||||||||||||| ||||||||||||| |||||||||||| |||||||||
seq2  ATGACAGCATGATTTGGATTTGAGAAACCTGGAAAATGAGAAATGTGGTG  191

seq1  AAGGGCGCACTAACGTTTATGCTTAGAATGTGAGAAGAAAGCATAAATTG  247
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  AAGGGCGCACTAACGTTTATGCTAGAAATGTGAGAAGAAAGCATAAATTG  241

seq1  -AGTCCGTGTGGTGGTGCTCAAGATAACATAATAGCTGGAGGATGTGGGC  296
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGTCCGTGTGGTGGTGCTCAAGATAACATAATAGCTGAAGGATGTGGGC  291

seq1  ATCGATCCCACTACCTCTTGCATGCTAAGCGAGCGCTCTACCATTTGAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATCCCACTACCTCTTGCATGCTAAGCGAGCGCTCTACCATTTGAGC  341

seq1  TAATCCCCCAAGGTAGAGGGAGAGAAAACTCATTTGTCTTTTCTTTTATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCCAAGGTAGAGGGAGAGAAAACTCATTTGTCTTTTCTTTTATG  391

seq1  CGAAGTGTCTTCAGTAGTCCTTATACAAGATACTTGTCATGGCTAGGGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGTCTTCAGTAGTCCTTATACAAGATACTTGTCATGGCTAGGGTC  441

seq1  CACGAAAACATGACAGTCAAAGCTAAAAACATTGGGTCCAAACTGATATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAAACATGACAGTCAAAGCTAAAAACATTGGGTCCAAACTGATATC  491

seq1  TTCTAACTGCTCAAAAGTGTAATGGGTAAACTGAGAGTCTAAATGCACAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTGCTCAAAAGTGTAATGGGTAAACTGAGAGTCTAAATGCACAG  541

seq1  GAGAAAGTGGTATAAAAAAAAAAAAAAAAAAAAAAAGCAACCATGTTTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGGTATAAAAAAAAAAAAAAAAAAAAAAAGCAACCATGTTTCC  591

seq1  GCCCGGTTTCGAACCGGGGACCTCTCGCGTGTTAGGCGAGCGTGATGACC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGTTTCGAACCGGGGACCTCTCGCGTGTTAGGCGAGCGTGATGACC  641

seq1  ACTACACTACGGAAACACCCACAGCCTCCTAGTTTTCCTAGTTTCAGGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTACGGAAACACCCACAGCCTCCTAGTTTTCCTAGTTTCAGGAC  691

seq1  ACGCATTCAAAACATGCCTACTTACTGGTTTGTTGTTAGCATTTGTTGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATTCAAAACATGCCTACTTACTGGTTTGTTGTTAGCATTTGTTGTA  741

seq1  TTTACTTGTATTATGTAACTAAATCAAAATAACCAAGGTGGTTGTCCCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTATTATGTAACTAAATCAAAATAACCAAGGTGGTTGTCCCAC  791

seq1  TCTATCCACAGCCCTTGGTGAGCCACTCCACTACTACCGCCTGTGCACCG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCACAGCCCTTGGTGAGCCACTCCACTACTACCGCCTGTGCACCG  841

seq1  AGATTGCACATTGTCGGTGAATTTGTCCCTCTGTGGCTGGTTTACCTCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCACATTGTCGGTGAATTTGTCCCTCTGTGGCTGGTTTACCTCAC  891

seq1  TCAACTTCATGTTCTCCGCTTCTTCTTCATTCTAGTGGTTGCAAGTGACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTCATGTTCTCCGCTTCTTCTTCATTCTAGTGGTTGCAAGTGACA  941

seq1  GAGCCTCTTTATAAAGGGCTGAGTAGCATTAATGTTCCATGTGTGTCTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTTTATAAAGGGCTGAGTAGCATTAATGTTCCATGTGTGTCTGC  991

seq1  TCTGTTTTCATCTGTCCATTGATGGACAGTAGCTTGATTTTGTATCTTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCATCTGTCCATTGATGGACAGTAGCTTGATTTTGTATCTTGA  1041

seq1  TTATTATGAATAATTTTGAATGTGAAGACATGAGTGTCTCAGAAGGCAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGAATAATTTTGAATGTGAAGACATGAGTGTCTCAGAAGGCAAG  1091

seq1  AATTC  1101
      |||||
seq2  AATTC  1096