BAC Information

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BAC

Clone NameB6Ng01-116J17
Chromosome16 (Build37)13 (Build37)
Map Location 90,569,402 - 90,570,54349,102,770 - 49,103,234
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116J17.bB6Ng01-116J17.g
ACCDH921563DH921564
length1,128694
definitionDH921563|Mus musculus domesticus DNA, BAC clone: B6Ng01-116J17, 5' end.DH921564|Mus musculus domesticus DNA, BAC clone: B6Ng01-116J17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,569,402 - 90,570,543)(49,102,770 - 49,103,234)
sequence
gaattcagaattcataggaagaataaatatggaaaagagatctgaatatt
agatggtttgaatgaccccatagcatgagtggatatgctgtagatctata
tgttcagaatgcgacttgtttaccatgcctaaaagtagacacatgagaaa
tttatggtctaaaaatgtgctattgattctactattgatttgttctctca
ttcattcattcattcattcaataaactttgctttaagaattatttaattt
cagagtccatattttgcttcaaaatttcaaaggtgtgtaacaggctcaca
ctggctaaagaactttgggatcactggaggtgtccagatttcacaaggta
aatggtgttccagaatgtttgcgacattggtggaggtcactcttgttatt
tctgagcatgggtctccttattcctcagcctcccttaaggtcacacgtgg
cactgtgactcagctcttccaataaaatatagacagaagctatggctaac
cttgctgagtctggacattgggagatacacatctctcctgcctcctgaca
aacttaccacatcttctgggttaatatttctgtatcatatttctggttca
tttcagcctactgaaaataagctctcatatacagatgcagggacatccag
cttacacaacacaggaagttcactctgtcctgcaagacttcaaatggaga
gctgttgaacattcagtgagccagaaagccccggtactgggaaggacagt
ttcccagtcttcatgatgcccatctgtcaatcaaaagacaatggcccaat
tttggttctagacaagaacaaggcctttgagcctagagaatgatggagca
atgatctgacaatctggaagcaacagagtccttgcccacaggcctggcac
ctttgaatggacagatgggacagaactgcccacaaacctgccacacttcc
tttgagctgttatttctgaggttaaaaaaatgcaaaaaaaaccactataa
ttttaaagccattttatagatctttttattcatattactgtgaaattttg
aagtacagtagaagctaagaattaaacagtgcaatctatatacgcaaagc
agtacactgtagccattcatgaactttc
gaattcagttcagtttggagcagttcagttcagtgcaattcagttccgtg
cagatgagctcagttcaactccgagctgagaggttgtgttcaaaacagct
cggttcatggagttcagaggcagttttcccaagcagagcaatttagtcag
aagctgagagaagccaatttgaatcgggcaggagagaaatttgagtcagc
cagccagagttcagaaagtactagaaagagtgagattatttggcagtgag
tctcagaggatgaaacattctaggtccaggttagcagatggagtctggaa
gctgaagccttcaaggtccatgtttgcagatgacttgattgtacggaggc
tagcagcttccaggcctaagcttagggatagttagatagaaatctccggg
gctggagagatggctcagtggttaagagcactggctgcttgctcttttag
aggtcctgagttcaattcccagcaaccacatggtggctcacaaccatctg
taatgggatctgatgccctcttctggtgtgtctgaagacagcagcagggt
actcacatttataaaataaatgaataaataaataaatcttaaagaaagaa
aggaaggaaggaagaaggagagaaaggaagaaagaaagaaagaaagaaag
aaagatagataaagaaagatagatttaaagaaagatagaaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90569402_90570543
seq2: B6Ng01-116J17.b_49_1176

seq1  GAATTCAGAATTCATAGGAAGAATAAATATGGAAAAGAGATCTGAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTCATAGGAAGAATAAATATGGAAAAGAGATCTGAATATT  50

seq1  AGATGGTTTGAATGACCCCATAGCATGAGTGGATATGCTGTAGATCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTTGAATGACCCCATAGCATGAGTGGATATGCTGTAGATCTATA  100

seq1  TGTTCAGAATGCGACTTGTTTACCATGCCTAAAAGTAGACACATGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAATGCGACTTGTTTACCATGCCTAAAAGTAGACACATGAGAAA  150

seq1  TTTATGGTCTAAAAATGTGCTATTGATTCTACTATTGATTTGTTCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTCTAAAAATGTGCTATTGATTCTACTATTGATTTGTTCTCTCA  200

seq1  TTCATTCATTCATTCATTCAATAAACTTTGCTTTAAGAATTATTTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATTCATTCATTCAATAAACTTTGCTTTAAGAATTATTTAATTT  250

seq1  CAGAGTCCATATTTTGCTTCAAAATTTCAAAGGTGTGTAACAGGCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCATATTTTGCTTCAAAATTTCAAAGGTGTGTAACAGGCTCACA  300

seq1  CTGGCTAAAGAACTTTGGGATCACTGGAGGTGTCCAGATTTCACAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAAAGAACTTTGGGATCACTGGAGGTGTCCAGATTTCACAAGGTA  350

seq1  AATGGTGTTCCAGAATGTTTGCGACATTGGTGGAGGTCACTCTTGTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTTCCAGAATGTTTGCGACATTGGTGGAGGTCACTCTTGTTATT  400

seq1  TCTGAGCATGGGTCTCCTTATTCCTCAGCCTCCCTTAAGGTCACACGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCATGGGTCTCCTTATTCCTCAGCCTCCCTTAAGGTCACACGTGG  450

seq1  CACTGTGACTCAGCTCTTCCAATAAAATATAGACAGAAGCTATGGCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGACTCAGCTCTTCCAATAAAATATAGACAGAAGCTATGGCTAAC  500

seq1  CTTGCTGAGTCTGGACATTGGGAGATACACATCTCTCCTGCCTCCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGAGTCTGGACATTGGGAGATACACATCTCTCCTGCCTCCTGACA  550

seq1  AACTTACCACATCTTCTGGGTTAATATTTCTGTATCATATTTCTGGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCACATCTTCTGGGTTAATATTTCTGTATCATATTTCTGGTTCA  600

seq1  TTTCAGCCTACTGAAAATAAGCTCTCATATACAGATGCAGGGACATCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCTACTGAAAATAAGCTCTCATATACAGATGCAGGGACATCCAG  650

seq1  CTTACACAACACAGGAAGTTCACTCTGTCCTGCAAGACTTCAAATGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAACACAGGAAGTTCACTCTGTCCTGCAAGACTTCAAATGGAGA  700

seq1  GCTGTTGAACATTCAGTGAGCCAGAAAGCCCCGGTACTGGGAAGGACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAACATTCAGTGAGCCAGAAAGCCCCGGTACTGGGAAGGACAGT  750

seq1  TTCCCAGTCTTCATGATGCCCATCTGTCAATCAAAAGACAATGGCCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTCTTCATGATGCCCATCTGTCAATCAAAAGACAATGGCCCAAT  800

seq1  TTTGGTTCTAGACAAGAACAAGGCCTTTGAGCCTAGAGAATGATGGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCTAGACAAGAACAAGGCCTTTGAGCCTAGAGAATGATGGAGCA  850

seq1  ATGATCTGACAATCTGGAAGCAACAGAGTCCTTGCCCACAGGCCTGGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGACAATCTGGAAGCAACAGAGTCCTTGCCCACAGGCCTGGCAC  900

seq1  CTTTGAATGGACAGATGGGACAGAACTGCCCACAAACCTGCCACACTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATGGACAGATGGGACAGAACTGCCCACAAACCTGCCACACTTCC  950

seq1  TTTGAGCTGTTATTTCTGAGGTTAAAAAAAATGCAAAAAAAAACCAACTA  1000
      ||||||||||||||||||||||| ||||||||||||||||||  | ||||
seq2  TTTGAGCTGTTATTTCTGAGGTT-AAAAAAATGCAAAAAAAA--CCACTA  997

seq1  TAATTTTAAAGCCATTTTATAAGATCTTTTTATTCATATTTACTGTGAAA  1050
      |||||||||||||||||||| ||||||||||||||||| |||||||| ||
seq2  TAATTTTAAAGCCATTTTAT-AGATCTTTTTATTCATA-TTACTGTG-AA  1044

seq1  ATTTTGAAGTACAGTAG-AGCTAAAAGAATTACACAGTGCATATCTATAT  1099
      ||||||||||||||||| ||||  |||||||| |||||||| ||||||||
seq2  ATTTTGAAGTACAGTAGAAGCT--AAGAATTAAACAGTGCA-ATCTATAT  1091

seq1  ACGCACAGGCCAAGTTACACTGTTAGCTATTCATGGTACTTTC  1142
      ||||| ||  ||   ||||||| |||| |||||| | ||||||
seq2  ACGCAAAG--CA--GTACACTG-TAGCCATTCAT-GAACTTTC  1128

seq1: chr13_49102770_49103234
seq2: B6Ng01-116J17.g_465_760

seq1  GGGCTGGAGAGATGGCTCAGCCATTAAGAGCACTGAC----TGCTCTTCC  46
      ||||||||||||||||||||   |||||||||||| |    |||||||  
seq2  GGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTTGCTCTTTT  50

seq1  AGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAACATC  96
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  AGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATC  100

seq1  TGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGT  146
      ||||||| ||||||||||||||||||||||||||||||||||||  ||| 
seq2  TGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAGCAGG  150

seq1  GTACTTATATACATAAAATAAATAAATAAATCTCTAACAAACCATCAAAA  196
      ||||| | ||  ||||||||||| |||||||    || ||| | | || |
seq2  GTACTCACATTTATAAAATAAATGAATAAAT---AAATAAATCTTAAAGA  197

seq1  CTTGTCAGGCACAGGA--TAAAGCAGAAGTAAACAAAGCATTTTAGAATT  244
            | | | ||||   || | ||||| | | |||| |    ||||  
seq2  ------AAG-AAAGGAAGGAAGGAAGAAGGAGAGAAAGGAAGAAAGAAAG  240

seq1  A---ATAAACAGTGACATCAATGTGGCACTTGCTGCTCTTGTAG-AAGAT  290
      |   | | | ||  | ||  ||   | |   | |    ||  || |||||
seq2  AAAGAAAGAAAGAAAGATAGATAAAGAA--AGATAGATTTAAAGAAAGAT  288

seq1  --CCAGATTCAGTTCCTAGCACAGTAACTAACTCCAGTTCCGGGGAATCT  338
          ||||                                          
seq2  AGAAAGAT------------------------------------------  296

seq1  AATACCCCCAGGTATTGCATGTATATGGTACATTATGCATACATGCAGGC  388
                                                        
seq2  --------------------------------------------------  296

seq1  AAAATACTTATACACATAAAATAAATAGATCTAAAAAAAGGTTTTAAAGA  438
                                                        
seq2  --------------------------------------------------  296

seq1  TATAATGAGATAGTTAGATAGAAAGAT  465
                                 
seq2  ---------------------------  296