BAC Information

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BAC

Clone NameB6Ng01-116L10
Chromosome13 (Build37)
Map Location 95,998,864 - 96,156,539
singlet/doubletdoublet
Overlap genePde8b, Zbed3, Aggf1
Upstream geneScamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41
Downstream geneCrhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116L10.bB6Ng01-116L10.g
ACCDH921643DH921644
length1,0881,168
definitionDH921643|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L10, 5' end.DH921644|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,155,453 - 96,156,539)(95,998,864 - 96,000,040)
sequence
gaattccacacttagctaggctagcctggcaggaatgctgttaacacact
gagccattttactggcccttgagtctactttattcattgtaatcctgttc
agtacagctcaaaaaccacacagtgatctcatttaaatttcttaatgact
ttctgaagatactaaccagaaatttcccataccttagatatgattattat
aaagacagccaagtgcctctctcttttgagaagcccagtcctgagctctc
aaatgtgccatagtctttcccctgggtgcctgtaacctctcttcttacaa
atattaaagaagtcttttgaagattgtgttttaatgtggatgagtgcttt
gcctgcagagggtggcattggatgccctgagtctagagttacagatgtgt
aggaaggaaaggatgctgagaactaaatctggtctgctataagacttgca
agtactcttaaccactgagccatctcttcaacactaaagacatcttcccc
tccccccaacccccagacagggtttctctgtgtagccctggctgtcctgg
aactcactctataaaccaggctggcctcagactcagagctctgcctgcct
ctgcctcccaggtgctggggttaaaggtgtgtgccactatgaaagggcaa
aggcatcttttcataagctccatctccacttcacagtggactgtcccgaa
gtcctttcctgctgcaaaggagaggatccagagttgtctgcacatgggcc
tctgagtgggaagagagggcatcctcggtctacttcagggatagcacaac
acggtctctggacctcctgccactttgtttcgtagttgtttgtgttttct
gttaatttggtcatgagctttgtgaattaatttgtgaattaattccagtt
aagtagtttcttattattcaagaaatgcagttgatttctttcctacccag
ccgcctcattctcctatacagtgcttcttggggtcagtcaaagctatttt
ctgggacaaacagctttggggagtctcaagttgaccatcagatggggaga
tatcaaacgaccggtgtctgctttgttcagagaaggaa
gaattctataatccctgtgctctttgtctccaggtcctcttggcccaagc
aatcaggctatgaaggatggaacattcatttccaaatgtcctgtaatgta
catttcacaagagtgtccaagacataaaaggatattcaaatgaaactcgg
gaagagcccactccacaaaggagcatccgcagtattcagggagttagggt
tttcaagaaacaacacagcataatatataaggtacaagggcagcaaaata
aatggtactggtgttcttttctggttattatgataattgtgagaggcttg
caagagaacgaggattgctagctagaccctgatgagggacttactaaatc
agaggaatcagtatgagcaaagagacagaggcacatctaaccttgatgga
actaaagtccatgaacacactggacaactagacagtgactcctgagccag
ggacgataaacacaaagagggaagagacagaaagtacccggtgatgaaat
tgtctttctgtgtagaagatgcctatatgctctgctttctttacagaact
gcccctgtgtgacaatctacattaacaaaataactctatttattgtctag
ctaaagatgttttccaagtgataaagtcttggcttccattaaatattgtt
cctttaatattcatatatagtacttgagattttagacattctgaaccaag
gtacataatttttatttatataaaaaagttactggtaagatcaatatata
aagtaaggtgtagcgtatatttgtgaatgtgcaatgcatttaagtgtaag
atttcctaaatgcctcatgagtaaggtttgcaatccaggtttgtttgagt
gtcctagtttgttgtctgttgttgtgtcaaacatcatgacaaaagccaac
ttagagaagaaagggcttactgcatctattttcacctccatcactgtcag
tttattaagagaagtcagggcagacccttgggagcttagactgaagcaga
ggccatgaggacaccacttattgggttacttcacatagcttgctccggct
gcttctaaacattcttaaacacttaccaaggatgaaccacccacaaatag
gagcttctacagactagtctgtggaagcactttctcagtgggttcctcct
ccgaattcacttgaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96155453_96156539
seq2: B6Ng01-116L10.b_44_1131 (reverse)

seq1  TTCCTGCTCTGAACATAGCAGACACCGTTCGTTTGATATCTCCCCATCTG  50
      ||||| ||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTCCTTCTCTGAACAAAGCAGACACCGGTCGTTTGATATCTCCCCATCTG  50

seq1  ATGGTCAACCTGAGACTCCCCAAAGGCTGTTTGTCCCAG-AAATAGCTTT  99
      ||||||||| |||||||||||||| |||||||||||||| ||||||||||
seq2  ATGGTCAACTTGAGACTCCCCAAA-GCTGTTTGTCCCAGAAAATAGCTTT  99

seq1  GACTGACCCCAAG-AGCACTGTATAGGAGAATG-GGCGGCTGGGTAGGAA  147
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  GACTGACCCCAAGAAGCACTGTATAGGAGAATGAGGCGGCTGGGTAGGAA  149

seq1  AGAAATTCAACTGCATTTCTTGAATAATAGGAAACTACTTAACTGGAATT  197
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAA-TCAACTGCATTTCTTGAATAATAAGAAACTACTTAACTGGAATT  198

seq1  AATTCACAAATTAATTCACAAAGCTCATGACCAAATTAACAGAAAACACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAAATTAATTCACAAAGCTCATGACCAAATTAACAGAAAACACA  248

seq1  AACAACTACGAAACAAAGTGGCAGGAGGTCCAGAGACCGTGTTGTGCTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTACGAAACAAAGTGGCAGGAGGTCCAGAGACCGTGTTGTGCTAT  298

seq1  CCCTGAAGTAGACCGAGGATGCCCTCTCTTCCCACTCAGAGGCCCATGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGTAGACCGAGGATGCCCTCTCTTCCCACTCAGAGGCCCATGTG  348

seq1  CAGACAACTCTGGATCCTCTCCTTTGCAGCAGGAAAGGACTTCGGGACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAACTCTGGATCCTCTCCTTTGCAGCAGGAAAGGACTTCGGGACAG  398

seq1  TCCACTGTGAAGTGGAGATGGAGCTTATGAAAAGATGCCTTTGCCCTTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTGAAGTGGAGATGGAGCTTATGAAAAGATGCCTTTGCCCTTTC  448

seq1  ATAGTGGCACACACCTTTAACCCCAGCACCTGGGAGGCAGAGGCAGGCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGCACACACCTTTAACCCCAGCACCTGGGAGGCAGAGGCAGGCAG  498

seq1  AGCTCTGAGTCTGAGGCCAGCCTGGTTTATAGAGTGAGTTCCAGGACAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGAGTCTGAGGCCAGCCTGGTTTATAGAGTGAGTTCCAGGACAGC  548

seq1  CAGGGCTACACAGAGAAACCCTGTCTGGGGGTTGGGGGGAGGGGAAGATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTACACAGAGAAACCCTGTCTGGGGGTTGGGGGGAGGGGAAGATG  598

seq1  TCTTTAGTGTTGAAGAGATGGCTCAGTGGTTAAGAGTACTTGCAAGTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTGTTGAAGAGATGGCTCAGTGGTTAAGAGTACTTGCAAGTCTT  648

seq1  ATAGCAGACCAGATTTAGTTCTCAGCATCCTTTCCTTCCTACACATCTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGACCAGATTTAGTTCTCAGCATCCTTTCCTTCCTACACATCTGT  698

seq1  AACTCTAGACTCAGGGCATCCAATGCCACCCTCTGCAGGCAAAGCACTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGACTCAGGGCATCCAATGCCACCCTCTGCAGGCAAAGCACTCA  748

seq1  TCCACATTAAAACACAATCTTCAAAAGACTTCTTTAATATTTGTAAGAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTAAAACACAATCTTCAAAAGACTTCTTTAATATTTGTAAGAAG  798

seq1  AGAGGTTACAGGCACCCAGGGGAAAGACTATGGCACATTTGAGAGCTCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTACAGGCACCCAGGGGAAAGACTATGGCACATTTGAGAGCTCAG  848

seq1  GACTGGGCTTCTCAAAAGAGAGAGGCACTTGGCTGTCTTTATAATAATCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCTTCTCAAAAGAGAGAGGCACTTGGCTGTCTTTATAATAATCA  898

seq1  TATCTAAGGTATGGGAAATTTCTGGTTAGTATCTTCAGAAAGTCATTAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGGTATGGGAAATTTCTGGTTAGTATCTTCAGAAAGTCATTAAG  948

seq1  AAATTTAAATGAGATCACTGTGTGGTTTTTGAGCTGTACTGAACAGGATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAATGAGATCACTGTGTGGTTTTTGAGCTGTACTGAACAGGATT  998

seq1  ACAATGAATAAAGTAGACTCAAGGGCCAGTAAAATGGCTCAGTGTGTTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAATAAAGTAGACTCAAGGGCCAGTAAAATGGCTCAGTGTGTTAA  1048

seq1  CAGCATTCCTGCCAGGCTAGCCTAGCTAAGTGTGGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCCTGCCAGGCTAGCCTAGCTAAGTGTGGAATTC  1088

seq1: chr13_95998864_96000040
seq2: B6Ng01-116L10.g_71_1238

seq1  GAATTCTATAATCCCTGTGCTCTTTGTCTCCAGGTCCTCTTGGCCCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATCCCTGTGCTCTTTGTCTCCAGGTCCTCTTGGCCCAAGC  50

seq1  AATCAGGCTATGAAGGATGGAACATTCATTTCCAAATGTCCTGTAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCTATGAAGGATGGAACATTCATTTCCAAATGTCCTGTAATGTA  100

seq1  CATTTCACAAGAGTGTCCAAGACATAAAAGGATATTCAAATGAAACTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACAAGAGTGTCCAAGACATAAAAGGATATTCAAATGAAACTCGG  150

seq1  GAAGAGCCCACTCCACAAAGGAGCATCCGCAGTATTCAGGGAGTTAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCCACTCCACAAAGGAGCATCCGCAGTATTCAGGGAGTTAGGGT  200

seq1  TTTCAAGAAACAACACAGCATAATATATAAGGTACAAGGGCAGCAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAAACAACACAGCATAATATATAAGGTACAAGGGCAGCAAAATA  250

seq1  AATGGTACTGGTGTTCTTTTCTGGTTATTATGATAATTGTGAGAGGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACTGGTGTTCTTTTCTGGTTATTATGATAATTGTGAGAGGCTTG  300

seq1  CAAGAGAACGAGGATTGCTAGCTAGACCCTGATGAGGGACTTACTAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAACGAGGATTGCTAGCTAGACCCTGATGAGGGACTTACTAAATC  350

seq1  AGAGGAATCAGTATGAGCAAAGAGACAGAGGCACATCTAACCTTGATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATCAGTATGAGCAAAGAGACAGAGGCACATCTAACCTTGATGGA  400

seq1  ACTAAAGTCCATGAACACACTGGACAACTAGACAGTGACTCCTGAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTCCATGAACACACTGGACAACTAGACAGTGACTCCTGAGCCAG  450

seq1  GGACGATAAACACAAAGAGGGAAGAGACAGAAAGTACCCGGTGATGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGATAAACACAAAGAGGGAAGAGACAGAAAGTACCCGGTGATGAAAT  500

seq1  TGTCTTTCTGTGTAGAAGATGCCTATATGCTCTGCTTTCTTTACAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTGTGTAGAAGATGCCTATATGCTCTGCTTTCTTTACAGAACT  550

seq1  GCCCCTGTGTGACAATCTACATTAACAAAATAACTCTATTTATTGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGTGACAATCTACATTAACAAAATAACTCTATTTATTGTCTAG  600

seq1  CTAAAGATGTTTTCCAAGTGATAAAGTCTTGGCTTCCATTAAATATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATGTTTTCCAAGTGATAAAGTCTTGGCTTCCATTAAATATTGTT  650

seq1  CCTTTAATATTCATATATAGTACTTGAGATTTTAGACATTCTGAACCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATATTCATATATAGTACTTGAGATTTTAGACATTCTGAACCAAG  700

seq1  GTACATAATTTTTATTTATATAAAAAAGTTACTGGTAAGATCAATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAATTTTTATTTATATAAAAAAGTTACTGGTAAGATCAATATATA  750

seq1  AAGTAAGGTGTAGCGTATATTTGTGAATGTGCAATGCATTTAAGTGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGTGTAGCGTATATTTGTGAATGTGCAATGCATTTAAGTGTAAG  800

seq1  ATTTCCTAAATGCCTCATGAGTAAGGTTTGCAATCCAGGTTTGTTTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAAATGCCTCATGAGTAAGGTTTGCAATCCAGGTTTGTTTGAGT  850

seq1  GTCCTAGTTTGTTGTCTGTTGTTGTGTCAAACATCATGAC-AAAGCCAAC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCCTAGTTTGTTGTCTGTTGTTGTGTCAAACATCATGACAAAAGCCAAC  900

seq1  TTAGAGAAGAAAGGGCTTACTGCATCTA-TTTCACCTCCATCACTGTCAG  948
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAGAGAAGAAAGGGCTTACTGCATCTATTTTCACCTCCATCACTGTCAG  950

seq1  -TTATTAAGAGAAGTCAGGGCAGACCCTT-GGAGCTAAGAACTGAAGCAG  996
       |||||||||||||||||||||||||||| |||||| || ||||||||||
seq2  TTTATTAAGAGAAGTCAGGGCAGACCCTTGGGAGCTTAG-ACTGAAGCAG  999

seq1  AGGCCATGAAGGAACACCACCTATTGGCTTACTCCACATAGCTTGCTCAG  1046
      |||||||||  | ||||||| |||||| ||||| |||||||||||||| |
seq2  AGGCCATGA--GGACACCACTTATTGGGTTACTTCACATAGCTTGCTCCG  1047

seq1  CCTGCTTTCTTAAACAATTCTTAAACCACTTACCAAGGATGACACCACCC  1096
       ||||||   ||||| ||||||||| |||||||||||||||| |||||||
seq2  GCTGCTT--CTAAAC-ATTCTTAAA-CACTTACCAAGGATGA-ACCACCC  1092

seq1  ACAAATAAGTAGCCTCCTACAGACTAGTCTGTTGGAGGCACTCTCTCAGT  1146
      |||||| || || || ||||||||||||||| |||| ||||| |||||| 
seq2  ACAAAT-AGGAG-CTTCTACAGACTAGTCTG-TGGAAGCACTTTCTCAG-  1138

seq1  TGGGTTCCCTCTCTCCAGATCACTTGAACAT  1177
      ||||||||  ||| | |  ||||||||||||
seq2  TGGGTTCCTCCTC-CGAATTCACTTGAACAT  1168