BAC Information

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BAC

Clone NameB6Ng01-116P01
Chromosome13 (Build37)
Map Location 88,101,566 - 88,236,892
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116P01.bB6Ng01-116P01.g
ACCDH921811DH921812
length1,0061,086
definitionDH921811|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P01, 5' end.DH921812|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,101,566 - 88,102,461)(88,235,769 - 88,236,892)
sequence
gaattcagtagtctcggttggcagacactgtattttacaacttagaataa
attgttctagactcctctggctttcaacatttatttctcgaaatcagctt
tgatttcctatgattttttttcatgttctttttcttgagctgtctaattc
ttttactttattttcaattcttgatagcctatcttctactagatccattc
tatttgtaaatatttcccttcagttttctagttaggttacaaaattttta
attccatttttattttaaaagatgtcctctttaatattgataatactagc
aacttataatttcaaacctgatttttctttattagttcattcatatgatt
tttcctgtgcattaatcaagccttttgtggttgttttcttgagattctat
gaagtgtttgttcatgtcttccttaaattcattgatggatttgatataac
ttataatgttcctttaacttttattctagggttcatttttgtagttctct
taagaaaaaaactggaaagaactcatgtgtttgatgggacacatgttatc
ttgcccattttttttttgagatttaatctaggcctgtggagttatttggt
tatgtttctgatgtgcaactcttgcctgccctaggttggaatagtttagc
agctacatgagcagagctaagataagtcaggctggtagatgagctttttt
attaacctggcataaatagctcaaaccatgagtctggggatagatgttgg
atggagagacagtaccaggttggaagagaagtgcaatagtaagaagaaaa
ctttccttcaaagggaaattatggccaggcagtggtggtacacgccttta
atcccagctcttgggaggcagaggcaggtagattgttgaattcgaggcca
gcctggtttacaccagttccgtacagccaaggtatacagagaaaccctgt
ctcaaagatgggggggggatcatgagtaaatattggttagagaaatagtc
ctgtgg
gaattctataaaacttcccctttatattcctttctctaaactaaaactta
cttatttataagtatataaactacttaagcttcataaatacacatattta
taagtaaattggatgtaaccatataatcagaatatctggtcatttacttt
atacttatttgtaaagacattctattggcaggtttccctttaccttttca
acatacttattttatctcagttaacaatttttatttcttcctcagagaaa
tattgtaataaaggcttaggtaagttcctgaatctggaaaagcaaattga
aaaatgagaaaattattcaaaaaccttattaagggaggaacttatagaaa
caagttaggtggacaagatcaggtcggaatcagaaacctatcagactaca
aaggtcacaaaggagtacaggcttgtgaacaaggtttgggtattgtttgt
ttactttttgggacatatatacgacagtgcaaatttattgtgttctgcaa
ggctgaactgcaagccagtatcgttggtgatggcaattctgtatttgtta
acaatgtgcctactatacatccccacaccaggccattcagcaatgtggag
agaatgggataaatacaaaggtataaataatcttcaagtttaatatacta
atatgaaacctctagtttactcagtgaagtatttgatctgtacttggtaa
tcattaaagtattggcttaaaattaaaaatgtacatctaatggaggttta
tttagatgtacttgggttattcctaaattttatcttaatattatagggta
gttataagtagcaaattgatagattgacctgctaaatgtttatcaccatt
cttggtgacctttactgatgcagttataggaatcaaaagaatgttatttt
ctcttgcattgcagacaaccaaatcattttgctcaggaaacatgaaatct
gactggctgactctacagcatcaataaataaatagagttcaaccaaagaa
aaaattctcagttttaacttatgtccagtcatccttgtaatctcacatgc
tacgaatacgatgaaattgaagacaaggggactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88101566_88102461
seq2: B6Ng01-116P01.b_161_1049

seq1  TTTTCATGTTCTTTTTCTTGAGCTGTCTAATTCTTTTACTTTATTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTTCTTTTTCTTGAGCTGTCTAATTCTTTTACTTTATTTTCAA  50

seq1  TTCTTGATAGCCTATCTTCTACTAGATCCATTCTATTTGTAAATATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATAGCCTATCTTCTACTAGATCCATTCTATTTGTAAATATTTCC  100

seq1  CTTCAGTTTTCTAGTTAGGTTACAAAATTTTTAATTCCATTTTTATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTTCTAGTTAGGTTACAAAATTTTTAATTCCATTTTTATTTTA  150

seq1  AAAGATGTCCTCTTTAATATTGATAATACTAGCAACTTATAATTTCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCCTCTTTAATATTGATAATACTAGCAACTTATAATTTCAAAC  200

seq1  CTGATTTTTCTTTATTAGTTCATTCATATGATTTTTCCTGTGCATTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTTCTTTATTAGTTCATTCATATGATTTTTCCTGTGCATTAATC  250

seq1  AAGCCTTTTGTGGTTGTTTTCTTGAGATTCTATGAAGTGTTTGTTCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTTGTGGTTGTTTTCTTGAGATTCTATGAAGTGTTTGTTCATGT  300

seq1  CTTCCTTAAATTCATTGATGGATTTGATATAACTTATAATGTTCCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAAATTCATTGATGGATTTGATATAACTTATAATGTTCCTTTAA  350

seq1  CTTTTATTCTAGGGTTCATTTTTGTAGTTCTCTTAAGAAAAAAACTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTCTAGGGTTCATTTTTGTAGTTCTCTTAAGAAAAAAACTGGAA  400

seq1  AGAACTCATGTGTTTGATGGGACACATGTTATCTTGCCCATTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCATGTGTTTGATGGGACACATGTTATCTTGCCCATTTTTTTTTT  450

seq1  GAGATTTAATCTAGGCCTGTGGAGTTATTTGGTTATGTTTCTGATGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTAATCTAGGCCTGTGGAGTTATTTGGTTATGTTTCTGATGTGCA  500

seq1  ACTCTTGCCTGCCCTAGGTTGGAATAGTTTAGCAGCTACATGAGCAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCCTGCCCTAGGTTGGAATAGTTTAGCAGCTACATGAGCAGAGC  550

seq1  TAAGATAAGTCAGGCTGGTAGATGAGCTTTTTTATTAACCTGGCATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAAGTCAGGCTGGTAGATGAGCTTTTTTATTAACCTGGCATAAAT  600

seq1  AGCTCAAACCATGAGTCTGGGGATAGATGTTGGATGGAGAGACAGTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAACCATGAGTCTGGGGATAGATGTTGGATGGAGAGACAGTACCA  650

seq1  GGTTGGAAGAGAAGTGCAATAGGTAAGAAGAAAACTTTCCTTCAAAGGGA  700
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTTGGAAGAGAAGTGCAATA-GTAAGAAGAAAACTTTCCTTCAAAGGGA  699

seq1  AATTATGGCCAGGCAGTGGTGGTACACGCCTTTAATCCCAGCTCTTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGCCAGGCAGTGGTGGTACACGCCTTTAATCCCAGCTCTTGGGA  749

seq1  GGCAGAGGCAGGTAGATTGTTGAATTCGAGGCCAGCCTGGTTTACA-CAG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCAGAGGCAGGTAGATTGTTGAATTCGAGGCCAGCCTGGTTTACACCAG  799

seq1  TTCCGGTACAGCCAAGGGTATACAGAGAAACCCTGTCTCAAAAAGAAGGG  849
      |||| |||||||||| |||||||||||||||||||||||  ||||| |||
seq2  TTCC-GTACAGCCAA-GGTATACAGAGAAACCCTGTCTC--AAAGATGGG  845

seq1  GGGGGGGAATCATGAGTAAAATATTGGGTAGAGAAATAGTCCTGTGG  896
      ||||||  ||||||||| ||||||||| |||||||||||||||||||
seq2  GGGGGG--ATCATGAGT-AAATATTGGTTAGAGAAATAGTCCTGTGG  889

seq1: chr13_88235769_88236892
seq2: B6Ng01-116P01.g_68_1153 (reverse)

seq1  CTCAGACTCCCCTTGTCTTTCAATTTTCAAATCTGTATTCTGGTAGCATG  50
      |||||  |||||||||| ||||||||    ||| ||||||  ||||||||
seq2  CTCAG--TCCCCTTGTC-TTCAATTT---CATC-GTATTC--GTAGCATG  41

seq1  TTGAAGATGTACAAAGATATGACTGTGACATAAGTTTAAAAAACTGGAGA  100
      |   |||| ||||| |  ||||||| ||||||||||   |||||| ||||
seq2  T--GAGAT-TACAAGG--ATGACTG-GACATAAGTT---AAAACT-GAGA  81

seq1  ATTTTTTTCCTTTGTGTTGAACCTCTTATTTATATATTGGATGCTGGTTA  150
      |||||||  ||||| |||||| ||| ||||||| |||| |||||||  ||
seq2  ATTTTTT--CTTTG-GTTGAA-CTC-TATTTATTTATT-GATGCTG--TA  123

seq1  GAGTCAGGCCAGTCAGGATTTTCATGGTTTCCCTGAGCAAAATGATTTGG  200
      |||||| |||||||||   |||||||  || |||||||||||||||||||
seq2  GAGTCA-GCCAGTCAG--ATTTCATG--TTTCCTGAGCAAAATGATTTGG  168

seq1  TTGTTCTTGCAATGCAAAGAGGAAAATAACATTCCTTTTGATTCCTATAA  250
      ||||   |||||||| |||| |||||||||||| ||||||||||||||||
seq2  TTGT--CTGCAATGC-AAGA-GAAAATAACATT-CTTTTGATTCCTATAA  213

seq1  CTGCATCAGTAAAGGTCACCAAGAATGGTGATAAAACATTTAGCAGGTCA  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGCATCAGTAAAGGTCACCAAGAATGGTGAT-AAACATTTAGCAGGTCA  262

seq1  ATCTATCAATTTGCTACTTATAACTACCCTATAATATTAAGATAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCAATTTGCTACTTATAACTACCCTATAATATTAAGATAAAATTT  312

seq1  AGGAATAACCCAAGTACATCTAAATAAACCTCCATTAGATGTACATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAACCCAAGTACATCTAAATAAACCTCCATTAGATGTACATTTTT  362

seq1  AATTTTAAGCCAATACTTTAATGATTACCAAGTACAGATCAAATACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGCCAATACTTTAATGATTACCAAGTACAGATCAAATACTTCA  412

seq1  CTGAGTAAACTAGAGGTTTCATATTAGTATATTAAACTTGAAGATTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAAACTAGAGGTTTCATATTAGTATATTAAACTTGAAGATTATTT  462

seq1  ATACCTTTGTATTTATCCCATTCTCTCCACATTGCTGAATGGCCTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTGTATTTATCCCATTCTCTCCACATTGCTGAATGGCCTGGTGT  512

seq1  GGGGATGTATAGTAGGCACATTGTTAACAAATACAGAATTGCCATCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGTATAGTAGGCACATTGTTAACAAATACAGAATTGCCATCACCA  562

seq1  ACGATACTGGCTTGCAGTTCAGCCTTGCAGAACACAATAAATTTGCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATACTGGCTTGCAGTTCAGCCTTGCAGAACACAATAAATTTGCACTG  612

seq1  TCGTATATATGTCCCAAAAAGTAAACAAACAATACCCAAACCTTGTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATATATGTCCCAAAAAGTAAACAAACAATACCCAAACCTTGTTCAC  662

seq1  AAGCCTGTACTCCTTTGTGACCTTTGTAGTCTGATAGGTTTCTGATTCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTACTCCTTTGTGACCTTTGTAGTCTGATAGGTTTCTGATTCCG  712

seq1  ACCTGATCTTGTCCACCTAACTTGTTTCTATAAGTTCCTCCCTTAATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCTTGTCCACCTAACTTGTTTCTATAAGTTCCTCCCTTAATAAG  762

seq1  GTTTTTGAATAATTTTCTCATTTTTCAATTTGCTTTTCCAGATTCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAATAATTTTCTCATTTTTCAATTTGCTTTTCCAGATTCAGGAA  812

seq1  CTTACCTAAGCCTTTATTACAATATTTCTCTGAGGAAGAAATAAAAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTAAGCCTTTATTACAATATTTCTCTGAGGAAGAAATAAAAATTG  862

seq1  TTAACTGAGATAAAATAAGTATGTTGAAAAGGTAAAGGGAAACCTGCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAGATAAAATAAGTATGTTGAAAAGGTAAAGGGAAACCTGCCAA  912

seq1  TAGAATGTCTTTACAAATAAGTATAAAGTAAATGACCAGATATTCTGATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTCTTTACAAATAAGTATAAAGTAAATGACCAGATATTCTGATT  962

seq1  ATATGGTTACATCCAATTTACTTATAAATATGTGTATTTATGAAGCTTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTACATCCAATTTACTTATAAATATGTGTATTTATGAAGCTTAA  1012

seq1  GTAGTTTATATACTTATAAATAAGTAAGTTTTAGTTTAGAGAAAGGAATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTATATACTTATAAATAAGTAAGTTTTAGTTTAGAGAAAGGAATA  1062

seq1  TAAAGGGGAAGTTTTATAGAATTC  1124
      ||||||||||||||||||||||||
seq2  TAAAGGGGAAGTTTTATAGAATTC  1086