BAC Information

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BAC

Clone NameB6Ng01-117C20
Chromosome13 (Build37)
Map Location 60,556,701 - 60,557,883
singlet/doubletsinglet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117C20.bB6Ng01-117C20.g
ACCDH921984DH921985
length1,1871,223
definitionDH921984|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C20, 5' end.DH921985|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattggttttaccttcaagttctccacaatatattcaccatgtat
gaaatagttcactgtagcaggaggcgctgcagcagctgacaggtgagttg
tgtgttcaggcataaaccggtcagggtggagtccagaggaattcacaaag
actgtgggggagtccaatactgacagaaggtttttttccccccctttttc
ttctaattccaacgtcattttctcctctttcctagaagaggcacttagcg
accttttgaatggacttatatttagtaccacttcatagaacatttcttaa
aaaaaaaaaaaaaaaaaaaaaaaagagatccattgaactggtaggcaagt
gcctgccttaaatatggctgggtgggaagtttcccagtaactgaatccag
attgaactatgcggagagctgccgatgcctcctggtttagtcaccactgg
caggggaaattatcctaaggcatctagatatttttggaagaatgaaatct
taagcttttttttttaaagccgttttgaggtctggaagaaccccagacat
gtttgctgttttcagtttaacgtttgctgagcatctttctattaacttag
gacactaagtgcagttcaagggtggctgagtccgcaaaatgtgtttccga
ttatttgcatacaatccagcaaagtagctttgggagggattttttttttt
tttcatctctttaattttcattaagcctcacgctttttcctccccatttc
ctttctctggctttagtttactgaatgaccttttttgtggacaataaaat
atctgcattttaaaaggctcagattttgtcagactacagagatgcctcag
taggacgagatgtgtttttccagagaaatggaagttggggtctgtttgga
agctgggctggggttccggggcctctacgtcttttttatttctcaaaacc
ctttgggttggtaattcttgaagctattagggttagtggacactgtggcc
atcgtggaggagaagaacaaaggagaagtcttccgtgctcactgggcccc
tgtggcctttgccagctgcctcgtggctgcctcgtgagaacggctccttt
aggggaattggctccagggcacctggtggagatctgaactaggcttcctg
agcccagaatgtttcggaggcagggggagtatttgca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atccagaagatgccccaactggtaagaaggacacatgctccactatgttc
atagcagccttatttataatagccagaagctggaaagaacccagatgccc
ctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagt
actactcagctattaaaaaaatgaatttatgaaattcctagccaaatgga
tggacctggagggcatcatcctgagtgaggtaacacattcacaaaggaac
tcacacaatatgtactcactgataagtggatattagcccaaaacctagga
tacccaagatataagatacaatttcctaaacacatgaaactcaagaaaaa
tgaagactgaagtgtggacactatgcccctccttagaagtgggaacaaaa
tacccttggaaggagttacagagacaaagtttggagctgagactcaagaa
aaatgaagactgaagtgtggacactatgcccctccttagaagtgggaaca
aaatacccttggaaggagttacagagacaaagtttggagctgagactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggga
acaaaataccctttggaaggagttacagagacaaagtttggagctgagat
gaaacgatggaccatgtagagactgccatattcagggatccaccccataa
tcagcatccaaacgctgacaccattgcatacactagcagatttatgaagg
accagatgtagctgtctcttgtgagactatgccggctagcaaatcaggat
ggatgcttcaagtcagctaatgatgatccagctccatggaggacttaaga
aagtcccagactagacgcaccttagtggaacactatgacttaccgatact
ccgagacttctgtgacatctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60556701_60557883
seq2: B6Ng01-117C20.b_41_1227 (reverse)

seq1  TGCAAATACT-CCCCTGCCTTCCCGGAACATTCTTGGCTCGGGAAGCATA  49
      |||||||||| |||||||||  ||| |||||||| ||||| |||||| ||
seq2  TGCAAATACTCCCCCTGCCT--CCGAAACATTCTGGGCTCAGGAAGCCTA  48

seq1  GTTCAGATTCCTCCAACAGGTTGCCCTGGAGCCACTTCCCCTTAAAGGAG  99
      ||||||||  ||||| |||| ||||||||||||| |||||| ||||||||
seq2  GTTCAGAT--CTCCACCAGG-TGCCCTGGAGCCAATTCCCC-TAAAGGAG  94

seq1  CCGTTCTCACGA-GCAGCCACGAGGCAGCT-GCAAAGG-CACAGGGG-CC  145
      |||||||||||| ||||||||||||||||| ||||||| |||||||| ||
seq2  CCGTTCTCACGAGGCAGCCACGAGGCAGCTGGCAAAGGCCACAGGGGCCC  144

seq1  AGTGAGCACGGAAGACTTCTCCTTTGTTCTTCTCCT-CACG-TTGCCAC-  192
      |||||||||||||||||||||||||||||||||||| |||| | ||||| 
seq2  AGTGAGCACGGAAGACTTCTCCTTTGTTCTTCTCCTCCACGATGGCCACA  194

seq1  GTGTTCACTAACCCTATTAGCTTCAAGAATTACCAA-CCAAAGGGTTTTG  241
      |||| ||||||||||| ||||||||||||||||||| |||||||||||||
seq2  GTGTCCACTAACCCTAATAGCTTCAAGAATTACCAACCCAAAGGGTTTTG  244

seq1  AGAAATAAAAGAGACCGTA-AGAGCCCCGAACCCCAGCCCAGCTTCCAGA  290
      |||||||||| ||| |||| ||  ||| |||||||||||||||||||| |
seq2  AGAAATAAAAAAGA-CGTAGAGGCCCCGGAACCCCAGCCCAGCTTCCAAA  293

seq1  CAG-CCCCAACTTCCATTTCTCTGGGGAAACACATCTCGTCCTACTGAGG  339
      ||| |||||||||||||||||||||  |||||||||||||||||||||||
seq2  CAGACCCCAACTTCCATTTCTCTGGAAAAACACATCTCGTCCTACTGAGG  343

seq1  CATCTCTGTAGTCTGACAAAATCTGAGCCTTTTAAAATGCAGATATTTTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTAGTCTGACAAAATCTGAGCCTTTTAAAATGCAGATATTTTA  393

seq1  TTGTCCACAAAAAAGGTCATTCAGTAAACTAAAGCCAGAGAAAGGAAATG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCACAAAAAAGGTCATTCAGTAAACTAAAGCCAGAGAAAGGAAATG  443

seq1  GGGAGGAAAAAGCGTGAGGCTTAATGAAAATTAAAGAGATGAAAAAAAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAAAAGCGTGAGGCTTAATGAAAATTAAAGAGATGAAAAAAAAA  493

seq1  AAAAATCCCTCCCAAAGCTACTTTGCTGGATTGTATGCAAATAATCGGAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCTCCCAAAGCTACTTTGCTGGATTGTATGCAAATAATCGGAA  543

seq1  ACACATTTTGCGGACTCAGCCACCCTTGAACTGCACTTAGTGTCCTAAGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTTGCGGACTCAGCCACCCTTGAACTGCACTTAGTGTCCTAAGT  593

seq1  TAATAGAAAGATGCTCAGCAAACGTTAAACTGAAAACAGCAAACATGTCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAAGATGCTCAGCAAACGTTAAACTGAAAACAGCAAACATGTCT  643

seq1  GGGGTTCTTCCAGACCTCAAAACGGCTTTAAAAAAAAAAGCTTAAGATTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTTCCAGACCTCAAAACGGCTTTAAAAAAAAAAGCTTAAGATTT  693

seq1  CATTCTTCCAAAAATATCTAGATGCCTTAGGATAATTTCCCCTGCCAGTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCAAAAATATCTAGATGCCTTAGGATAATTTCCCCTGCCAGTG  743

seq1  GTGACTAAACCAGGAGGCATCGGCAGCTCTCCGCATAGTTCAATCTGGAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAACCAGGAGGCATCGGCAGCTCTCCGCATAGTTCAATCTGGAT  793

seq1  TCAGTTACTGGGAAACTTCCCACCCAGCCATATTTAAGGCAGGCACTTGC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTACTGGGAAACTTCCCACCCAGCCATATTTAAGGCAGGCACTTGC  843

seq1  CTACCAGTTCAATGGATCTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGTTCAATGGATCTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAGA  893

seq1  AATGTTCTATGAAGTGGTACTAAATATAAGTCCATTCAAAAGGTCGCTAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTATGAAGTGGTACTAAATATAAGTCCATTCAAAAGGTCGCTAA  943

seq1  GTGCCTCTTCTAGGAAAGAGGAGAAAATGACGTTGGAATTAGAAGAAAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTTCTAGGAAAGAGGAGAAAATGACGTTGGAATTAGAAGAAAAA  993

seq1  GGGGGGGAAAAAAACCTTCTGTCAGTATTGGACTCCCCCACAGTCTTTGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGAAAAAAACCTTCTGTCAGTATTGGACTCCCCCACAGTCTTTGT  1043

seq1  GAATTCCTCTGGACTCCACCCTGACCGGTTTATGCCTGAACACACAACTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGACTCCACCCTGACCGGTTTATGCCTGAACACACAACTC  1093

seq1  ACCTGTCAGCTGCTGCAGCGCCTCCTGCTACAGTGAACTATTTCATACAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCAGCTGCTGCAGCGCCTCCTGCTACAGTGAACTATTTCATACAT  1143

seq1  GGTGAATATATTGTGGAGAACTTGAAGGTAAAACCAATGAATTC  1183
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATATATTGTGGAGAACTTGAAGGTAAAACCAATGAATTC  1187