BAC Information

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BAC

Clone NameB6Ng01-117F21
Chromosome13 (Build37)
Map Location 105,871,314 - 106,034,810
singlet/doubletdoublet
Overlap gene4933425L06Rik, LOC100040646, LOC100040656, Rnf180
Upstream geneNln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp
Downstream geneHtr1a, EG668025, Olfr717-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117F21.bB6Ng01-117F21.g
ACCDH922126DH922127
length9361,132
definitionDH922126|Mus musculus domesticus DNA, BAC clone: B6Ng01-117F21, 5' end.DH922127|Mus musculus domesticus DNA, BAC clone: B6Ng01-117F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,033,877 - 106,034,810)(105,871,314 - 105,872,453)
sequence
gaattctgtcccatggacacaaggatagaacgagagaactaactttggca
agctgtcctctgacttccatacatgtgtggtggcatgaacacacagagcc
aaacaaataaaatgtaagaattcttaaaaaggcttttcacaccttccccc
ctttttcctctctcttttgagacagagtctcattctgtagccctggctgg
cctgggctatgtaaactagaccaccatcaaagacatacagatccacctgc
ctctgttggaattaaaggaatgttccattacacgtggcctacttcttctt
ttttgatggctgaggaaagcgttttatcatcctgtatctttattcttcag
ccagccatcctttccttcttttaaataatgcccacttgctagtttgctct
gttggaaacaccactcactatggagaccatagtaatgaataaaatacctt
tctccctgtggagacccaaggcaatggggaagatatatagatggttatgg
ctgatagtattcttaccatacagcattggctaagaccttaggatgtaggt
gaaaatccaagaacacaaatagatgaaataccaaggctgtctgggaaaga
gagggagggaagaatatgcaaatataaggacgctaattacaaagaagggg
atgagttgatggctgatggagagttgtgatgcagttggctctgtgggtgc
cagggagctgctggtcagttctcagcacagtgcccaacttcacagtggag
acagctgaatggatgcccaggaataagttggaccaataaaacatgtttct
catacttcagccatggtgaatgacttcaggtaactctggctgcaagttga
attcccagatgagagccttagaaattaccagtaattctcactatgaagat
tatgtttcacttggcctggatcggtggcttgtgtgt
gaattccatcaggccacaataactgtgtaaaatgtaactcaatagaagca
ttagttttttcacttgctctgttctacaaaacaagcaagcaagcaagcaa
gcaaacaaacaaacaaaaagcccgtcagagtccacagaactacatttcag
ggtcagaatgttagaattaagaaagctacgagtgaagaatcatgtggtaa
atcagaaaacaagttgtgaattgtctggctcttaaataaaactgaaggaa
ggaaatggcatttgaagtatgagagaggcagaaaggggccccaaagatta
caacttagtctggaaataaaagggctgaggcaaggtgaaatgatgtagag
ttccccaggataagaactgggtctgtttttctctttttggaatcagcacc
aggcacaagtgtctgggatcagttattagattaatgcatactcaggatgc
ctcagacagaaaggaatcaataatttcgatgttaaaacatgtatttgagg
tccttaacaggtgtcctatttttctgaaaaaaaaaaaaaaaaataaaggc
gggttgctgcagtggaaaaaagaaaggtaagaaagaaacaagtgttgact
atgctcctacaactatgacctcattctgccaaagaagaagcaaggagcat
cagggtttccgttggggtctcaacggctgtcaggcaacaagacagccact
tcttgccttaggcacagtcaggaaagcacagggcttgagaggccagggaa
cagaggagaagcagaggcctcaacccatggaccaggccctgcaagtgctg
cgcatgctctggctgccatcccgcgcatgttccctctgttatctgtgcat
gctgtggctgctgtcctgcgcatgcgaacagggctgccgaggttctgaga
gaggcgtcctaaactgtacctgagaaatggaggcccctgaagaagagcca
cctgctctggcacctcctcagcctgcgaagcttggggaagaactctctcc
ccaaacccaggggaacagtcagagacatgaactctataacttgactatac
ttcatttcaacgatgttacgatgttgaactcgagtactgaaagcctgtag
aagcctgctagtgcggccgctcatgttcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106033877_106034810
seq2: B6Ng01-117F21.b_43_978 (reverse)

seq1  ACACACAAGC--ACGATCCAGGCCAAGTGAAACATAATCTTCATAGTGAG  48
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ACACACAAGCCACCGATCCAGGCCAAGTGAAACATAATCTTCATAGTGAG  50

seq1  AATTACTGGTAATTTCTAAGGCTCTCATCTGGGAATTCAACTTGCAGCCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGGTAATTTCTAAGGCTCTCATCTGGGAATTCAACTTGCAGCCA  100

seq1  GAGTTACCTGAAGTCATTCACCATGGCTGAAGTATGAGAAACATGTTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACCTGAAGTCATTCACCATGGCTGAAGTATGAGAAACATGTTTTA  150

seq1  TTGGTCCAACTTATTCCTGGGCATCCATTCAGCTGTCTCCACTGTGAAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCAACTTATTCCTGGGCATCCATTCAGCTGTCTCCACTGTGAAGT  200

seq1  TGGGCACTGTGCTGAGAACTGACCAGCAGCTCCCTGGCACCCACAGAGCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACTGTGCTGAGAACTGACCAGCAGCTCCCTGGCACCCACAGAGCC  250

seq1  AACTGCATCACAACTCTCCATCAGCCATCAACTCATCCCCTTCTTTGTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATCACAACTCTCCATCAGCCATCAACTCATCCCCTTCTTTGTAA  300

seq1  TTAGCGTCCTTATATTTGCATATTCTTCCCTCCCTCTCTTTCCCAGACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGTCCTTATATTTGCATATTCTTCCCTCCCTCTCTTTCCCAGACAG  350

seq1  CCTTGGTATTTCATCTATTTGTGTTCTTGGATTTTCACCTACATCCTAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTATTTCATCTATTTGTGTTCTTGGATTTTCACCTACATCCTAAG  400

seq1  GTCTTAGCCAATGCTGTATGGTAAGAATACTATCAGCCATAACCATCTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGCCAATGCTGTATGGTAAGAATACTATCAGCCATAACCATCTAT  450

seq1  ATATCTTCCCCATTGCCTTGGGTCTCCACAGGGAGAAAGGTATTTTATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCCCCATTGCCTTGGGTCTCCACAGGGAGAAAGGTATTTTATTC  500

seq1  ATTACTATGGTCTCCATAGTGAGTGGTGTTTCCAACAGAGCAAACTAGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATGGTCTCCATAGTGAGTGGTGTTTCCAACAGAGCAAACTAGCA  550

seq1  AGTGGGCATTATTTAAAAGAAGGAAAGGATGGCTGGCTGAAGAATAAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCATTATTTAAAAGAAGGAAAGGATGGCTGGCTGAAGAATAAAGA  600

seq1  TACAGGATGATAAAACGCTTTCCTCAGCCATCAAAAAAGAAGAAGTAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATGATAAAACGCTTTCCTCAGCCATCAAAAAAGAAGAAGTAGGC  650

seq1  CACGTGTAATGGAACATTCCTTTAATTCCAACAGAGGCAGGTGGATCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTAATGGAACATTCCTTTAATTCCAACAGAGGCAGGTGGATCTGT  700

seq1  ATGTCTTTGATGGTGGTCTAGTTTACATAGCCCAGGCCAGCCAGGGCTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTGATGGTGGTCTAGTTTACATAGCCCAGGCCAGCCAGGGCTAC  750

seq1  AGAATGAGACTCTGTCTCAAAAGAGAGAGGAAAAAGGGGGGAAGGTGTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGACTCTGTCTCAAAAGAGAGAGGAAAAAGGGGGGAAGGTGTGA  800

seq1  AAAGCCTTTTTAAGAATTCTTACATTTTATTTGTTTGGCTCTGTGTGTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTTTTAAGAATTCTTACATTTTATTTGTTTGGCTCTGTGTGTTC  850

seq1  ATGCCACCACACATGTATGGAAGTCAGAGGACAGCTTGCCAAAGTTAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCACACATGTATGGAAGTCAGAGGACAGCTTGCCAAAGTTAGTT  900

seq1  CTCTCGTTCTATCCTTGTGTCCATGGGACAGAATTC  934
      ||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTTCTATCCTTGTGTCCATGGGACAGAATTC  936

seq1: chr13_105871314_105872453
seq2: B6Ng01-117F21.g_67_1198

seq1  GAATTCCATCAGGCCACAATAACTGTGTAAAATGTAACTCAATAGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGGCCACAATAACTGTGTAAAATGTAACTCAATAGAAGCA  50

seq1  TTAGTTTTTTCACTTGCTCTGTTCTACAAAACAAGCAAGCAAGCAAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTTCACTTGCTCTGTTCTACAAAACAAGCAAGCAAGCAAGCAA  100

seq1  GCAAACAAACAAACAAAAAGCCCGTCAGAGTCCACAGAACTACATTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAACAAACAAAAAGCCCGTCAGAGTCCACAGAACTACATTTCAG  150

seq1  GGTCAGAATGTTAGAATTAAGAAAGCTACGAGTGAAGAATCATGTGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAATGTTAGAATTAAGAAAGCTACGAGTGAAGAATCATGTGGTAA  200

seq1  ATCAGAAAACAAGTTGTGAATTGTCTGGCTCTTAAATAAAACTGAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAACAAGTTGTGAATTGTCTGGCTCTTAAATAAAACTGAAGGAA  250

seq1  GGAAATGGCATTTGAAGTATGAGAGAGGCAGAAAGGGGCCCCAAAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGCATTTGAAGTATGAGAGAGGCAGAAAGGGGCCCCAAAGATTA  300

seq1  CAACTTAGTCTGGAAATAAAAGGGCTGAGGCAAGGTGAAATGATGTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAGTCTGGAAATAAAAGGGCTGAGGCAAGGTGAAATGATGTAGAG  350

seq1  TTCCCCAGGATAAGAACTGGGTCTGTTTTTCTCTTTTTGGAATCAGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGGATAAGAACTGGGTCTGTTTTTCTCTTTTTGGAATCAGCACC  400

seq1  AGGCACAAGTGTCTGGGATCAGTTATTAGATTAATGCATACTCAGGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAGTGTCTGGGATCAGTTATTAGATTAATGCATACTCAGGATGC  450

seq1  CTCAGACAGAAAGGAATCAATAATTTCGATGTTAAAACATGTATTTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGAAAGGAATCAATAATTTCGATGTTAAAACATGTATTTGAGG  500

seq1  TCCTTAACAGGTGTCCTATTTTTCTGAAAAAAAAAAAAAAAAATAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACAGGTGTCCTATTTTTCTGAAAAAAAAAAAAAAAAATAAAGGC  550

seq1  GGGTTGCTGCAGTGGAAAAAAGAAAGGTAAGAAAGAAACAAGTGTTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTGCAGTGGAAAAAAGAAAGGTAAGAAAGAAACAAGTGTTGACT  600

seq1  ATGCTCCTACAACTATGACCTCATTCTGCCAAAGAAGAAGCAAGGAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTACAACTATGACCTCATTCTGCCAAAGAAGAAGCAAGGAGCAT  650

seq1  CAGGGTTTCCGTTGGGGTCTCAACGGCTGTCAGGCAACAAGACAGCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCCGTTGGGGTCTCAACGGCTGTCAGGCAACAAGACAGCCACT  700

seq1  TCTTGCCTTAGGCACAGTCAGGAAAGCACAGGGCTTGAGAGGCCAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTTAGGCACAGTCAGGAAAGCACAGGGCTTGAGAGGCCAGGGAA  750

seq1  CAGAGGAGAAGCAGAGGCCTCAACCCATGGACCAGGCCCTGCAAGTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGAAGCAGAGGCCTCAACCCATGGACCAGGCCCTGCAAGTGCTG  800

seq1  CGCATGCTCTGGCTGCCATCCCGCGCATGTTCCCTCTGTTATCTGTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCTCTGGCTGCCATCCCGCGCATGTTCCCTCTGTTATCTGTGCAT  850

seq1  GCTGTGGCTGCTGTCCTGCGCATGCGAACAGGGCTGCCGAGGTTCTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCTGCTGTCCTGCGCATGCGAACAGGGCTGCCGAGGTTCTGAGA  900

seq1  GAGGCGTCCTAGACTGTACCTGAGAAATGGAGGCCCCTGAGGAAGAGCCA  950
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  GAGGCGTCCTAAACTGTACCTGAGAAATGGAGGCCCCTGAAGAAGAGCCA  950

seq1  CCTGCTCTGGCACCCCCTCAGCCTGCGAAGCTTGGGGAAGAACTCTCTCC  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGGCACCTCCTCAGCCTGCGAAGCTTGGGGAAGAACTCTCTCC  1000

seq1  CCAAACCCAGGGGAACCAGTCAGGAGACATGGACTCCTATAACTTGACTA  1050
      ||||||||||||||| |||||| |||||||| ||| ||||||||||||||
seq2  CCAAACCCAGGGGAA-CAGTCA-GAGACATGAACT-CTATAACTTGACTA  1047

seq1  TACTTCATTTCAACGATGTTTACGATG-TGGACTCGAGTACTGAAGAGCC  1099
      |||||||||||||||||| |||||||| || |||||||||||||| ||||
seq2  TACTTCATTTCAACGATG-TTACGATGTTGAACTCGAGTACTGAA-AGCC  1095

seq1  TGTAGGAGGCGCTGCTAGGTGCGGGCCGC-CATGTTTCTTGC  1140
      ||||| ||   |||||| |||| |||||| |||| |||||||
seq2  TGTAGAAG--CCTGCTA-GTGC-GGCCGCTCATG-TTCTTGC  1132