BAC Information

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BAC

Clone NameB6Ng01-117G09
Chromosome13 (Build37)
Map Location 24,119,660 - 24,227,901
singlet/doubletdoublet
Overlap geneLrrc16
Upstream geneV1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117G09.bB6Ng01-117G09.g
ACCDH922150DH922151
length1,0251,014
definitionDH922150|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G09, 5' end.DH922151|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,119,660 - 24,120,696)(24,226,880 - 24,227,901)
sequence
gaattcctgacttttcaccaattagctgttcatcacaggacacagtgata
aatacttcattaggaaaatacagcatttgctgctataaatttataaagta
tttaggcatctggcatctgaagtatttttcagcaccctgcatagtgaagg
tcaataggcaccggcagaagacagttatgcaggctctcccaactttgggc
tatagcaagggtctgaggggcagagtaagggaggtagctgtagctgggaa
attgttgggtagaactatggagaacagctgcaaagcttatgggatgcaga
gtttaataaacagcagatgtgaagagataatacgagagccctgtctgctg
tgtaggccaccttttacttcctccaagccaaggcccactggggagaacca
tttcctttcaatgccctgagcacaacagatgtacagtttccctttctctg
gggaacctttcctagagctcaggacagtgcctacaacctgggcacactat
cttaataatcactacaaggatacatccctttaagaagctatagaagaggc
gccagagaacctgacagcctctggaacaggcggaagcacagaggcgctga
ggcagcaccctgcgtgggccggggacagccggccaccttccggaccggag
gacaggtgcccgcccggctggggaggcgacctaagccacagcagcagcgg
tcgccatcttggtccgggacccgccgaacttaggaaattagtctgaacag
gtgagagggtgcgccagagaacctgacagcttctggaacaggcggaagca
cagaggcgctgaggcagcaccctgcgtgggccggggacagccgggcacct
tccggaccagaggacagtgcccacccggctggggaggcggcctaagccac
agcagcagcggtcgccatcttggtccgggacccgccgaacttagaaatta
gtctgaacagtgagaggtgcgccagagacctgacagctctgaacagcaga
gcaagagcgctgagcagcaccctgt
gaattctccatcttcgtctcaacattgatagatgaggtcggcgtaggagt
cactctgcctctggagggaacatttgttttcatttgctgttggaaatgtt
tcccaggcttgctgaatagggcctttcatctttcaatgttaggtatttga
tgaggattaattattcaactgagctgagggcacggaggcagcgtggcttt
tttactttctgacagggatgctgccttgtgtgtaaaatgattcccttgta
gcattcacacggaatggggtaacttccgtcatcttgagcagggagtgtga
aggaaggtggaggctgaaaccaaaactaggtcttgtggcaagcagcctaa
gaacgagcccagactgaaaataaagacacagggctggagtgtggagttca
cgggggcgttgtcatttctgtagggaaaacagccgttctctctgcccgct
ctgttagaagtggcagagtgggaatgaggcaaagtggaatctggacacag
cacctcctatggtcagggcagctgtatcaggtttgtttgtaagaggcggg
gatctggctgtatttagcggctgacagggctgagtcagtacagggtcccc
aaggaggtgaccttcagaagacaggctagcagggcactgttaatcattag
ggaaatgtaaattaaaagcacaatgaggtactatcacatagctagtcatc
tggctgtgataaaagtaaacgtctttgagggtgtgaggaaaggaaaatgt
ttccattgctggtgggattggagagggatgcagccattgggaacctagag
agacaggggtggttggttgttttgtttttctttttcaagacatggtttca
agacagggcagtcctgtctgttcctagaactcactttgtagaccaggctg
ggctcaaactacacctgcctctgcctcctgggtggtggactaacgcttat
ccacatgcccgactgatgaagcctttttgaaggttaaacccatgttccaa
atatctagcaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24119660_24120696
seq2: B6Ng01-117G09.b_43_1067

seq1  GAATTCCTGACTTTTCACCAATTAGCTGTTCATCACAGGACACAGTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACTTTTCACCAATTAGCTGTTCATCACAGGACACAGTGATA  50

seq1  AATACTTCATTAGGAAAATACAGCATTTGCTGCTATAAATTTATAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCATTAGGAAAATACAGCATTTGCTGCTATAAATTTATAAAGTA  100

seq1  TTTAGGCATCTGGCATCTGAAGTATTTTTCAGCACCCTGCATAGTGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCATCTGGCATCTGAAGTATTTTTCAGCACCCTGCATAGTGAAGG  150

seq1  TCAATAGGCACCGGCAGAAGACAGTTATGCAGGCTCTCCCAACTTTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGGCACCGGCAGAAGACAGTTATGCAGGCTCTCCCAACTTTGGGC  200

seq1  TATAGCAAGGGTCTGAGGGGCAGAGTAAGGGAGGTAGCTGTAGCTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAGGGTCTGAGGGGCAGAGTAAGGGAGGTAGCTGTAGCTGGGAA  250

seq1  ATTGTTGGGTAGAACTATGGAGAACAGCTGCAAAGCTTATGGGATGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGGTAGAACTATGGAGAACAGCTGCAAAGCTTATGGGATGCAGA  300

seq1  GTTTAATAAACAGCAGATGTGAAGAGATAATACGAGAGCCCTGTCTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAAACAGCAGATGTGAAGAGATAATACGAGAGCCCTGTCTGCTG  350

seq1  TGTAGGCCACCTTTTACTTCCTCCAAGCCAAGGCCCACTGGGGAGAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCCACCTTTTACTTCCTCCAAGCCAAGGCCCACTGGGGAGAACCA  400

seq1  TTTCCTTTCAATGCCCTGAGCACAACAGATGTACAGTTTCCCTTTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCAATGCCCTGAGCACAACAGATGTACAGTTTCCCTTTCTCTG  450

seq1  GGGAACCTTTCCTAGAGCTCAGGACAGTGCCTACAACCTGGGCACACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTTCCTAGAGCTCAGGACAGTGCCTACAACCTGGGCACACTAT  500

seq1  CTTAATAATCACTACAAGGATACATCCCTTTAAGAAGCTATAGAAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAATCACTACAAGGATACATCCCTTTAAGAAGCTATAGAAGAGGC  550

seq1  GCCAGAGAACCTGACAGCCTCTGGAACAGGCGGAAGCACAGAGGCGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAACCTGACAGCCTCTGGAACAGGCGGAAGCACAGAGGCGCTGA  600

seq1  GGCAGCACCCTGCGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCACCCTGCGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAG  650

seq1  GACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCACAGCAGCAGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCACAGCAGCAGCGG  700

seq1  TCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAG  750

seq1  GTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCA  800

seq1  CAGAGGCGCTGAGGCAGCACCCTGCGTGGGCCGGGGACAGCCGGCCACCT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGAGGCGCTGAGGCAGCACCCTGCGTGGGCCGGGGACAGCCGGGCACCT  850

seq1  TCCGGACCAGAGGACAGGTGCCCACCCGGCTGGGGAGGCGGCCTAAGCCA  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCGGACCAGAGGACA-GTGCCCACCCGGCTGGGGAGGCGGCCTAAGCCA  899

seq1  CAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTA-GAAAT  948

seq1  TAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAA  1000
      ||||||||||| |||||| |||||||||||| |||||||||| ||| |||
seq2  TAGTCTGAACA-GTGAGA-GGTGCGCCAGAG-ACCTGACAGC-TCT-GAA  993

seq1  CAGGCAGAAGCACAGAGGCGCTGAGGCAGCACCCTGT  1037
      || |||| |||| ||| ||||||| ||||||||||||
seq2  CA-GCAG-AGCA-AGA-GCGCTGA-GCAGCACCCTGT  1025

seq1: chr13_24226880_24227901
seq2: B6Ng01-117G09.g_68_1081 (reverse)

seq1  GAATTGCTAGGATATTTGGAACATTTGTGTTTAACCTTCTAAAAAGCTTT  50
      ||||||||| |||||||||||||  || ||||||||||| ||||||  ||
seq2  GAATTGCTA-GATATTTGGAACA--TGGGTTTAACCTTC-AAAAAGGCTT  46

seq1  CACTCAGTCGGGCATGGTGGCTTACGACGTTAGTCCCACCACCCAGGAGG  100
      || |||||||||||| |||| | |   ||||||| |||||||||||||||
seq2  CA-TCAGTCGGGCAT-GTGGATAA--GCGTTAGT-CCACCACCCAGGAGG  91

seq1  CAGAGGCAGGTGGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCTAG  150
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGTAGTTTGAGCCCAGCCTGGTCTACAAAGTGAGTTCTAG  141

seq1  G-ACAGACAGGACTGCCCTGTCTTGAAACCATGTCTTGAAAAAGAAAAAC  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACAGGACTGCCCTGTCTTGAAACCATGTCTTGAAAAAGAAAAAC  191

seq1  AAAACAACCAACCACCCCTGTCTCTCTAGGTTCCCAATGGCTGCATCCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCAACCACCCCTGTCTCTCTAGGTTCCCAATGGCTGCATCCCT  241

seq1  CTCCAATCCCACCAGCAATGGAAACATTTTCCTTTCCTCACACCCTCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATCCCACCAGCAATGGAAACATTTTCCTTTCCTCACACCCTCAAA  291

seq1  GACGTTTACTTTTATCACAGCCAGATGACTAGCTATGTGATAGTACCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTACTTTTATCACAGCCAGATGACTAGCTATGTGATAGTACCTCA  341

seq1  TTGTGCTTTTAATTTACATTTCCCTAATGATTAACAGTGCCCTGCTAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTTAATTTACATTTCCCTAATGATTAACAGTGCCCTGCTAGCC  391

seq1  TGTCTTCTGAAGGTCACCTCCTTGGGGACCCTGTACTGACTCAGCCCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGAAGGTCACCTCCTTGGGGACCCTGTACTGACTCAGCCCTGT  441

seq1  CAGCCGCTAAATACAGCCAGATCCCCGCCTCTTACAAACAAACCTGATAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCTAAATACAGCCAGATCCCCGCCTCTTACAAACAAACCTGATAC  491

seq1  AGCTGCCCTGACCATAGGAGGTGCTGTGTCCAGATTCCACTTTGCCTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCTGACCATAGGAGGTGCTGTGTCCAGATTCCACTTTGCCTCAT  541

seq1  TCCCACTCTGCCACTTCTAACAGAGCGGGCAGAGAGAACGGCTGTTTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCTGCCACTTCTAACAGAGCGGGCAGAGAGAACGGCTGTTTTCC  591

seq1  CTACAGAAATGACAACGCCCCCGTGAACTCCACACTCCAGCCCTGTGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAATGACAACGCCCCCGTGAACTCCACACTCCAGCCCTGTGTCT  641

seq1  TTATTTTCAGTCTGGGCTCGTTCTTAGGCTGCTTGCCACAAGACCTAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAGTCTGGGCTCGTTCTTAGGCTGCTTGCCACAAGACCTAGTT  691

seq1  TTGGTTTCAGCCTCCACCTTCCTTCACACTCCCTGCTCAAGATGACGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCAGCCTCCACCTTCCTTCACACTCCCTGCTCAAGATGACGGAA  741

seq1  GTTACCCCATTCCGTGTGAATGCTACAAGGGAATCATTTTACACACAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCCATTCCGTGTGAATGCTACAAGGGAATCATTTTACACACAAGG  791

seq1  CAGCATCCCTGTCAGAAAGTAAAAAAGCCACGCTGCCTCCGTGCCCTCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCCTGTCAGAAAGTAAAAAAGCCACGCTGCCTCCGTGCCCTCAG  841

seq1  CTCAGTTGAATAATTAATCCTCATCAAATACCTAACATTGAAAGATGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGAATAATTAATCCTCATCAAATACCTAACATTGAAAGATGAAA  891

seq1  GGCCCTATTCAGCAAGCCTGGGAAACATTTCCAACAGCAAATGAAAACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTATTCAGCAAGCCTGGGAAACATTTCCAACAGCAAATGAAAACAA  941

seq1  ATGTTCCCTCCAGAGGCAGAGTGACTCCTACGCCGACCTCATCTATCAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCCTCCAGAGGCAGAGTGACTCCTACGCCGACCTCATCTATCAAT  991

seq1  GTTGAGACGAAGATGGAGAATTC  1022
      |||||||||||||||||||||||
seq2  GTTGAGACGAAGATGGAGAATTC  1014