BAC Information

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BAC

Clone NameB6Ng01-117I07
Chromosome13 (Build37)13 (Build37)
Map Location 65,626,986 - 65,627,51566,408,358 - 66,409,448
singlet/doubletsingletsinglet
Overlap geneLOC665777
Upstream genePpia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767
Downstream geneEG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I07.bB6Ng01-117I07.g
ACCDH922239DH922240
length1,0591,082
definitionDH922239|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I07, 5' end.DH922240|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,626,986 - 65,627,515)(66,408,358 - 66,409,448)
sequence
gaattctttgttgagctctgtaccccattcttaagttgggttatttgatt
atctggagtccagctaattgagttctttgtatatattggatattagtccc
ctgtctgatttagaattggtaaagatcctttcccaactgttggtggcttt
tttgtcttattgacagtgtcctttgcgttacagaagctttgcaattttat
gaggtcccatttgtcaattctcaatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatctttgaggcttttccctatt
ttctccagtataagtttcagtgtctctggttttaactggaattccttgat
ccatttagacttgagctttgtacaaggagacaagaatgaatcaattcgca
cccttctacatgataactgccagttgtgcctgcaccatttgttgaaaatg
ctgtctttttttccactggatggttttagctcccttgtcaaagatctagt
gaccttaggtgtgtgagttcatttctgggtctccaattctattccattgt
tctagctgtttgtcactgtactagtaccatgcagtttttatcacaattgc
tctgtagtacagcttgaggtcaggcatggtgatcccagcagaggttcttt
tatcattgagaatagcttttgctatcctaggtctttttgtgattcgagat
gaatttgcaaattgccctttctaattagatgaagaattgagttgtgattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttactatattgatcttgccaatctatgagcatgggagatctttccatct
tctgagatcttctttgatttcttttttcagagaattcaagttcttatcat
acatatctttcactttcttagatagaatcacaccaaggtatttcatatta
tttgtacctattgtaaagggtgtgtttccctaatttctttctcatccggt
tatactttgtgtagagtatagcctggctcacacaatatactgtgaccagt
acatagtaa
gaattctttgcaacacttgaggctccacactggagtttattatgaatatc
aggaacttgtgaaagcatttaagtagtgttcaagtcttagaaactaagaa
gcatttatgctcgagaaactctgaaaatgtgacaatgaagggaaaatttc
aaattgttcactgtcaaatatttcataatgaagataaagtagaaaagcca
gaagaatgtgtaactctttgttggagactgaaagaatccattgcagaaga
aatctgattatgatggataatacacccctcaaaagagagagtgacaccaa
tagcattctttatgtttaatttaaatgaagatactcagacaaatcatatt
ttttatttatttatttatttatttttttggtttttcgagacagggtttct
ctgtatagccctggctgtcctggaactcactttgtagaccaggctggact
ggaactcagaaatccacctgcctctgcctccctaagtgctgggatcaaag
gcgtgcgccactacaccaggcccatattttttaaaagtgggattgataaa
ctaaaccaccaaaatggaatgctcttcctgccagtatcctacagatacac
agactgccctgagtgtcaagtattcataatctgtagcatatgctggtttc
aagtgtcaggataggaactgtctttgagtcccttggcatctggtaaccaa
ctcctttcctcatcgtcctggatgtaactgcaataaatttcattggttga
acaagttgtaatgggctgtttcatttttaacttgggacaggtagatgaat
atgccttgttgcatctctgtagaaaatgtctctcatacaacatgctgaac
ccattactgttttctccatatttgtacataaaaataatactagaccagta
tttttcacctgtcatagatacttgtttggaggatcctgaatgtctaactg
gttactaagacctaagaaacctgtatttcttaggagtgacacattccttt
gtccctaggggaatcactacattagtatactttgaattttatgagtgctg
agcattaggactgggaaacctactatacatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65626986_65627515
seq2: B6Ng01-117I07.b_578_1102

seq1  AATTCTATTCCATTGGTCTACCTGTCTGTCGCTGTACCAGTACCATGCAG  50
      ||||||||||||||| |||| |||| |||| |||||| ||||||||||||
seq2  AATTCTATTCCATTGTTCTAGCTGTTTGTCACTGTACTAGTACCATGCAG  50

seq1  GTTTTATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATT  100
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTTATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATC  100

seq1  CCACCAGAGGTTCTTTTATCATTGAAAATAGCTTTTGCTATCCTAGGTTT  150
      ||| ||||||||||||||||||||| |||||||||||||||||||||| |
seq2  CCAGCAGAGGTTCTTTTATCATTGAGAATAGCTTTTGCTATCCTAGGTCT  150

seq1  TTTTGTTATTCCAGATGAATTTGCAAATTGCCTTTTCTAATTCGATGAAG  200
      |||||| |||| |||||||||||||||||||| ||||||||| |||||||
seq2  TTTTGTGATTCGAGATGAATTTGCAAATTGCCCTTTCTAATTAGATGAAG  200

seq1  CATTTAGTTGGAATTTTGATGGGGATTGCA-TGAATCT-CAGATTAATTT  248
       ||| |||||  |||||||||||||||||| |||||||  |||||  |||
seq2  AATTGAGTTGTGATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTT  250

seq1  TGGCATGGTAGCCATTTTTACTATATTGATCCTGCCAGTCCATGAGCATG  298
      ||||| | ||||||||||||||||||||||| ||||| || |||||||||
seq2  TGGCAAGATAGCCATTTTTACTATATTGATCTTGCCAATCTATGAGCATG  300

seq1  GGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCTGTCTTCAAAGAC  348
      ||||||||||||||||||||||||||||||| |||||| | |||| ||| 
seq2  GGAGATCTTTCCATCTTCTGAGATCTTCTTTGATTTCTTTTTTCAGAGAA  350

seq1  TTAAAGTTCTTATCATACAGATCTTTCACTTTCTTAGTTAGAATCACACC  398
      || |||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TTCAAGTTCTTATCATACATATCTTTCACTTTCTTAGATAGAATCACACC  400

seq1  ATGGTATTTCATATTATTTGTGACTAGTGTGAAGTGTGTTGTTTCCCTAA  448
      | |||||||||||||||||||  ||| ||| ||| ||| |||||||||||
seq2  AAGGTATTTCATATTATTTGTACCTATTGTAAAGGGTG-TGTTTCCCTAA  449

seq1  TTTCTTTCTCATCCTCTTTATCATTTGTGTAGAGAAAGGTCTTGGCTTCA  498
      ||||||||||||||   ||||  ||||||||||| |  | | |||| |||
seq2  TTTCTTTCTCATCC-GGTTATACTTTGTGTAGAGTATAG-CCTGGC-TCA  496

seq1  CTCAATATACTGTGACCAGGGTACATGAGTAA  530
      | ||||||||||||||||  |||||| |||||
seq2  CACAATATACTGTGACCA--GTACAT-AGTAA  525

seq1: chr13_66408358_66409448
seq2: B6Ng01-117I07.g_68_1149 (reverse)

seq1  TCATGTATAGTGGGTCTCACAGTCCTAATGCTACAGCACTCATAAAATTC  50
      ||||||||||| ||| || ||||||||||||| |||||||||||||||||
seq2  TCATGTATAGTAGGTTTCCCAGTCCTAATGCT-CAGCACTCATAAAATTC  49

seq1  AAAGTATACTAATGTAGGTGGATTCACCTAGAGACAAAGGAATGTGTCAC  100
      |||||||||||||||||   ||||| ||||| ||||||||||||||||||
seq2  AAAGTATACTAATGTAG--TGATTCCCCTAGGGACAAAGGAATGTGTCAC  97

seq1  TCCTAAGAAATACATGTTTTCCTATGGTCTTATGTAACCAGTTAGACATT  150
      |||||||||||||| ||||  ||  ||||||| |||||||||||||||||
seq2  TCCTAAGAAATACAGGTTT--CTTAGGTCTTA-GTAACCAGTTAGACATT  144

seq1  CAGAATACCTCCAAACAAGTTACTATGGACAGGTTGAAAAATACTGGTCT  200
      ||| || |||||||||||||  |||| |||||| ||||||||||||||||
seq2  CAGGAT-CCTCCAAACAAGTATCTAT-GACAGG-TGAAAAATACTGGTCT  191

seq1  AGTATTAATTTTATGTTACAAGTATGGAGAAAACAGTAATGGGTTCAGCA  250
      ||||||| ||||||| ||||| ||||||||||||||||||||||||||||
seq2  AGTATTATTTTTATG-TACAAATATGGAGAAAACAGTAATGGGTTCAGCA  240

seq1  TGTTGTATGAGAGACATTTTCTACAGAGATGCAAC-ACGCATATTCATCT  299
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  TGTTGTATGAGAGACATTTTCTACAGAGATGCAACAAGGCATATTCATCT  290

seq1  ACCTGTCCCAAGTTGAAAATGAAAACAACCCATTACAACTTGTTCAACCA  349
      |||||||||||||| |||||| ||||| ||||||||||||||||||||||
seq2  ACCTGTCCCAAGTTAAAAATG-AAACAGCCCATTACAACTTGTTCAACCA  339

seq1  ATGAAATTTATTGCAGTTACATCCAGGACTATGAGG-AAGGAGTTGGTTA  398
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  ATGAAATTTATTGCAGTTACATCCAGGACGATGAGGAAAGGAGTTGGTTA  389

seq1  CCAGATGCCAAGGGACTCAAAGACAGTTCCTATCCTGACACTTGAAACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCCAAGGGACTCAAAGACAGTTCCTATCCTGACACTTGAAACCA  439

seq1  GCATATGCTACAGATTATGAATACTTGACACTCAGGGCAATCTGTGTATC  498
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCATATGCTACAGATTATGAATACTTGACACTCAGGGCAGTCTGTGTATC  489

seq1  TGTAGGATACTGGCAGGAAGAGCATTCCATTTTGGTGGTTTAGTTTATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATACTGGCAGGAAGAGCATTCCATTTTGGTGGTTTAGTTTATCA  539

seq1  ATCCCACTTTTAAAAAATATGGGCCTGGTGTAGTGGCGCATGCCTTTGAT  598
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCCCACTTTTAAAAAATATGGGCCTGGTGTAGTGGCGCACGCCTTTGAT  589

seq1  CCCAGCACTTAGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCCAGTCCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTAGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCCAGTCCAG  639

seq1  CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACC  689

seq1  CTGTCTCGAAAAACCAAAAAAAAAAAAAAATAAATAAATAAAAAATATGA  748
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  CTGTCTCGAAAAACCAAAAAAATAAATAAATAAATAAATAAAAAATATGA  739

seq1  TTTGTCTGAGTATCTTCATTTAAATTAAACATAAAGAATGCTATTGGTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGAGTATCTTCATTTAAATTAAACATAAAGAATGCTATTGGTGT  789

seq1  CACTCTCTCTTTTGAGGGGTGTATTATCCATCATAATCAGATTTCTTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCTTTTGAGGGGTGTATTATCCATCATAATCAGATTTCTTCTG  839

seq1  CAATGGATTCTTTCAGTCTCCAACAAAGAGTTACACATTCTTCTGGCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATTCTTTCAGTCTCCAACAAAGAGTTACACATTCTTCTGGCTTT  889

seq1  TCTACTTTATCTTCATTATGAAATATTTGACAGTGAACAATTTGAAATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTATCTTCATTATGAAATATTTGACAGTGAACAATTTGAAATTT  939

seq1  TCCCTTCATTGTCACATTTTCAGAGTTTCTCGAGCATAAATGCTTCTTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCATTGTCACATTTTCAGAGTTTCTCGAGCATAAATGCTTCTTAG  989

seq1  TTTCTAAGACTTGAACACTACTTAAATGCTTTCACAAGTTCCTGATATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGACTTGAACACTACTTAAATGCTTTCACAAGTTCCTGATATTC  1039

seq1  ATAATAAACTCCAGTGTGGAGCCTCAAGTGTTGCAAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAACTCCAGTGTGGAGCCTCAAGTGTTGCAAAGAATTC  1082