BAC Information

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BAC

Clone NameB6Ng01-117J14
Chromosome13 (Build37)
Map Location 71,519,782 - 71,642,010
singlet/doubletdoublet
Overlap geneLOC627230
Upstream geneEG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC100042360, Irx1, LOC100042828, LOC100042832, LOC100042836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117J14.bB6Ng01-117J14.g
ACCDH922298DH922299
length1,1091,029
definitionDH922298|Mus musculus domesticus DNA, BAC clone: B6Ng01-117J14, 5' end.DH922299|Mus musculus domesticus DNA, BAC clone: B6Ng01-117J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,640,913 - 71,642,010)(71,519,782 - 71,520,790)
sequence
gaattcctaactatacttccttgagacttctgtcaaccatgagggagatg
tcaggacacaggtgacatcaatggcagttttcaggttcccgaaaaattag
ccctgaccatacaccagaaaaggctttgagattctctgggaatgggtggg
agttactatactcaaggtaaggtcctcaagcagagagaagtcagaggttc
aaattatgaagaggagagccagggatactcttccacttgccagcattagg
gaggctgagattgtaggatcattgagttcaaaatcagcctgacttacatg
gtaagtgtcaggtcaatctgtgtgacccaagaaaccaaaaaaaaaaacta
aaaaaccaaaccaaaccaaaccaaaaataagtaaataaataaataacaaa
acaaaaacaaaacaaaaaaaacaaaaaaacaaaaaacaaaaaaagcaaaa
caacaacaacaaaaaaaaaaaaaaaaaaaaggaagaacccacagggtaca
tccaggagagtttctagcacaaggcttccacctatcaaggatctacacag
agagctcacatgagaagacattcagcctttctaggggaccagactctata
agcctgattgaagggctggtggcacctgttgctgatctccatctccatca
ttgttgtgtagaagttactgctgtggcccaagtcctccattgtcagtcat
gtccacagcctttttggtcatgcacacctaccaccttaaactcctggcct
gttaagacagtatcttgcagaagacgagggaatagccaggcttttgtctg
cttcatgctgtatggtgccacggatgggaggcacaatgggccctccctca
atccgtgcaaatcaaggacagatgggcatagagtcgtgagtgacagacac
gacacgaggagaagtgtgttgattctgagacttctgtccaaacgaatgcc
agactttttatacagaataaaaacaagaaaagccaggcgaaccacatcct
cacagttacagtgaccacaaaacaaaaggaatgcttacatcaaaagatgg
gtgaggactcaggccgcatttacccactttaaaatggggacgggtttatt
gctagtcta
gaattcatatacacatacatacactcacatacagacatacatactataca
catgtacacttaattgaatgcacaaatacatgcatccatgcatgttatgc
acatgtgaacacactcacatgaaaatacatacatatacatactcacatgc
atacttacacacatacatatatacatacacatacatacatgcatacacgg
atacatatgtgcaaacatgtaaacacatgcacacatagatccacaggcac
atgcacaccttcatagttgaacacatacatgcatatatacacatatgaac
acatacacaaacacaaacaacacacacatacacatataaacacacacatg
aacacacccacatccactcatgctcaggaaagattaaaatgagaagtact
acccagttgttccagaagatgagatttccccctgcactgcaaatgcttct
taaataagaaaataaaatcatgggagatttttgtaaaacttaagatctta
agaaaagctgcggggaggcggcctcagcctcagcagcagcggtcaccatc
ttggttccgggactcagcagaacttaggaaattagtctgaacaggtgaga
gggtgcgccagagaaccggacagcttctgggacaggcggaagcacagagc
cactgaggcagcacccttggcgggccacagccagccagccaccgtccgga
ccagaggacaggtgtccgcttggcttgggaggcggcctcagcctcagcag
cagcggtcgccatcctggttccgggactcagcagaacttaggaaattagt
ctgaacaggtgagagggtgcgccagagaaccagacagcttctgggacagg
cggaagcacagagccgctgaggcagcacccttggcgggccgcagacagcc
ggcaccgtccggaccagaggacagtgtcgcctggcttgggaggcagcctc
agcctcagagcagcggtcgccatcttggtccgggactccctggaacttag
aattagtctgcacaggtgagagtctgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71640913_71642010
seq2: B6Ng01-117J14.b_47_1155 (reverse)

seq1  TAGACTAGCATTACACCTGTCCCCATTTT-AAGT-GGTAAATGCGGCCTG  48
      |||||||||| || ||| ||||||||||| |||| |||||||||||||||
seq2  TAGACTAGCAATAAACCCGTCCCCATTTTAAAGTGGGTAAATGCGGCCTG  50

seq1  -GTCCTCA-CCATCTTTTGATGTATGCATTCCTTTTGTTTTGT-GTCACT  95
       ||||||| ||||||||||||||| |||||||||||||||||| ||||||
seq2  AGTCCTCACCCATCTTTTGATGTAAGCATTCCTTTTGTTTTGTGGTCACT  100

seq1  GTAACTGTGAGGATGT-GTTCGCCTGGCTTTTCTTGTTTTTATTCTGTAT  144
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTAACTGTGAGGATGTGGTTCGCCTGGCTTTTCTTGTTTTTATTCTGTAT  150

seq1  -AAAAGTCTGGCATTCGTTTGGACAGAAGTCTCAGATTCAACACAC-TCT  192
       ||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  AAAAAGTCTGGCATTCGTTTGGACAGAAGTCTCAGAATCAACACACTTCT  200

seq1  -CTCGTGTCGTGTCTGTCACTCACCGACTCTATGCCCATCTGTCCTTGAT  241
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTCGTGTCGTGTCTGTCACTCA-CGACTCTATGCCCATCTGTCCTTGAT  249

seq1  TTGCACGGATTGA-GGAGGGCCCATTGTGCCT-CCATCCGTGGCACCATA  289
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TTGCACGGATTGAGGGAGGGCCCATTGTGCCTCCCATCCGTGGCACCATA  299

seq1  CAGCATGAAGCAGACAAAAGCCTGGCTATTCCCTCGTCTTCTGCAAGATA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGAAGCAGACAAAAGCCTGGCTATTCCCTCGTCTTCTGCAAGATA  349

seq1  CTGTCTTAACAGGCCAGGAGTTTAAGGTGGTAGGTGTGCATGACC-AAAA  388
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGTCTTAACAGGCCAGGAGTTTAAGGTGGTAGGTGTGCATGACCAAAAA  399

seq1  GGCTGTGGACATGACTGACAATGGAGGACTTGGGCCACAGCAGTAACTTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGACATGACTGACAATGGAGGACTTGGGCCACAGCAGTAACTTC  449

seq1  TACACAACAATGATGGAGATGGAGATCAGCAACAGGTGCCACCAGCCCTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAACAATGATGGAGATGGAGATCAGCAACAGGTGCCACCAGCCCTT  499

seq1  CAATCAGGCTTATAGAGTCTGGTCCCCTAGAAAGGCTGAATGTCTTCTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGCTTATAGAGTCTGGTCCCCTAGAAAGGCTGAATGTCTTCTCA  549

seq1  TGTGAGCTCTCTGTGTAGATCCTTGATAGGTGGAAGCCTTGTGCTAGAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTCTCTGTGTAGATCCTTGATAGGTGGAAGCCTTGTGCTAGAAA  599

seq1  CTCTCCTGGATGTACCCTGTGGGTTCTTCCTTTTTTTTTTTTTTTTTTTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGATGTACCCTGTGGGTTCTTCCTTTTTTTTTTTTTTTTTTTT  649

seq1  GTTGTTGTTGTTTTGCTTTTTTTGTTTTTTGTTTTTTTGTTTTTTTTGTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTTTGCTTTTTTTGTTTTTTGTTTTTTTGTTTTTTTTGTT  699

seq1  TTGTTTTTGTTTTGTTATTTATTTATTTACTTATTTTTGGTTTGGTTTGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTGTTATTTATTTATTTACTTATTTTTGGTTTGGTTTGG  749

seq1  TTTGGTTTTTTAGTTTTTTTTTTTGGTTTCTTGGGTCACACAGATTGACC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTTAGTTTTTTTTTTTGGTTTCTTGGGTCACACAGATTGACC  799

seq1  TGACACTTACCATGTAAGTCAGGCTGATTTTGAACTCAATGATCCTACAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTACCATGTAAGTCAGGCTGATTTTGAACTCAATGATCCTACAA  849

seq1  TCTCAGCCTCCCTAATGCTGGCAAGTGGAAGAGTATCCCTGGCTCTCCTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTCCCTAATGCTGGCAAGTGGAAGAGTATCCCTGGCTCTCCTC  899

seq1  TTCATAATTTGAACCTCTGACTTCTCTCTGCTTGAGGACCTTACCTTGAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTTGAACCTCTGACTTCTCTCTGCTTGAGGACCTTACCTTGAG  949

seq1  TATAGTAACTCCCACCCATTCCCAGAGAATCTCAAAGCCTTTTCTGGTGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAACTCCCACCCATTCCCAGAGAATCTCAAAGCCTTTTCTGGTGT  999

seq1  ATGGTCAGGGCTAATTTTTCGGGAACCTGAAAACTGCCATTGATGTCACC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGGGCTAATTTTTCGGGAACCTGAAAACTGCCATTGATGTCACC  1049

seq1  TGTGTCCTGACATCTCCCTCATGGTTGACAGAAGTCTCAAGGAAGTATAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTGACATCTCCCTCATGGTTGACAGAAGTCTCAAGGAAGTATAG  1099

seq1  TTAGGAATTC  1098
      ||||||||||
seq2  TTAGGAATTC  1109

seq1: chr13_71519782_71520790
seq2: B6Ng01-117J14.g_66_1069

seq1  GAATTCATATACACATACATACACTCACATACAGACATACATACTATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATACACATACATACACTCACATACAGACATACATACTATACA  50

seq1  CATGTACACTTAATTGAATGCACAAATACATGCATCCATGCATGTTATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACACTTAATTGAATGCACAAATACATGCATCCATGCATGTTATGC  100

seq1  ACATGTGAACACACTCACATGAAAATACATACATATACATACTCACATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAACACACTCACATGAAAATACATACATATACATACTCACATGC  150

seq1  ATACTTACACACATACATATATACATACACATACATACATGCATACACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACACACATACATATATACATACACATACATACATGCATACACGG  200

seq1  ATACATATGTGCAAACATGTAAACACATGCACACATAGATCCACAGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGTGCAAACATGTAAACACATGCACACATAGATCCACAGGCAC  250

seq1  ATGCACACCTTCATAGTTGAACACATACATGCATATATACACATATGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACCTTCATAGTTGAACACATACATGCATATATACACATATGAAC  300

seq1  ACATACACAAACACAAACAACACACACATACACATATAAACACACACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACAAACACAAACAACACACACATACACATATAAACACACACATG  350

seq1  AACACACCCACATCCACTCATGCTCAGGAAAGATTAAAATGAGAAGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCCACATCCACTCATGCTCAGGAAAGATTAAAATGAGAAGTACT  400

seq1  ACCCAGTTGTTCCAGAAGATGAGATTTCCCCCTGCACTGCAAATGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTGTTCCAGAAGATGAGATTTCCCCCTGCACTGCAAATGCTTCT  450

seq1  TAAATAAGAAAATAAAATCATGGGAGATTTTTGTAAAACTTAAGATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGAAAATAAAATCATGGGAGATTTTTGTAAAACTTAAGATCTTA  500

seq1  AGAAAAGCTGCGGGGAGGCGGCCTCAGCCTCAGCAGCAGCGGTCACCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCTGCGGGGAGGCGGCCTCAGCCTCAGCAGCAGCGGTCACCATC  550

seq1  TTGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACAGGTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACAGGTGAGA  600

seq1  GGGTGCGCCAGAGAACCGGACAGCTTCTGGGACAGGCGGAAGCACAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGCCAGAGAACCGGACAGCTTCTGGGACAGGCGGAAGCACAGAGC  650

seq1  CACTGAGGCAGCACCCTTGGCGGGCCACAGCCAGCCAGCCACCGTCCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGCAGCACCCTTGGCGGGCCACAGCCAGCCAGCCACCGTCCGGA  700

seq1  CCAGAGGACAGGTGTCCGCTTGGCTTGGGAGGCGGCCTCAGCCTCAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGACAGGTGTCCGCTTGGCTTGGGAGGCGGCCTCAGCCTCAGCAG  750

seq1  CAGCGGTCGCCATCCTGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGTCGCCATCCTGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGT  800

seq1  CTGAACAGGTGAGAGGGTGCGCCAGAGAACCAGACAGCTTCTGGGACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGGTGAGAGGGTGCGCCAGAGAACCAGACAGCTTCTGGGACAGG  850

seq1  CGGAAGCACAGAGCCGCTGAGGCAGCACCCTTGGCGGGCCGCAGACAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGCACAGAGCCGCTGAGGCAGCACCCTTGGCGGGCCGCAGACAGCC  900

seq1  GGCCACCGTCCGGACCAGAGGACAGGTGTCGCCTGGCTTGGGAGGCAGCC  950
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GG-CACCGTCCGGACCAGAGGACA-GTGTCGCCTGGCTTGGGAGGCAGCC  948

seq1  TCAGCCTCAGGAGCAGCGGTCGCCATCTTGGTTCCGGGACTCCCTGGAAC  1000
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TCAGCCTCA-GAGCAGCGGTCGCCATCTTGG-TCCGGGACTCCCTGGAAC  996

seq1  TTAGGAATT  1009
      ||| |||||
seq2  TTA-GAATT  1004