BAC Information

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BAC

Clone NameB6Ng01-117N05
Chromosome13 (Build37)
Map Location 23,980,241 - 24,111,754
singlet/doubletdoublet
Overlap geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117N05.bB6Ng01-117N05.g
ACCDH922465DH922466
length1,1431,127
definitionDH922465|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N05, 5' end.DH922466|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,110,588 - 24,111,754)(23,980,241 - 23,981,376)
sequence
gaattctgtagacaacagtggatctgcccaggaccaacactccaagttcg
ttgagtcctaactcgggtggatgagctgatagttaagattgaatatttat
cattttaacatggatgtcaacacgttgatgtatttgctaccataaagggt
aaaccggatcccttttcctcagtagtgcaaagaggagattatttcaaaag
gcattcagatcatgacagtgggaagccttccagtagagggaaaagatctt
caaaactctacttcgccattgcagaagaggaagcgaatgcacctgggtac
aggaagtcacagccaacaaatggttagagccttcggttttcatccctcgc
tggcctgaagctgatgaactggcgctaacaaacaaacgagctttaattga
gtagctgctggtgggggctgggtcaggtcctttagaggactgaaccctaa
ctctactcggcaacaggatggtccctctccggggaggcaaatgtgaaatc
aaaatctaaaactcgattatggggagcttcaagttaccttagggatttgt
ctagtcacattttagtgagcatgaatgttaatttttatatttggggtcat
atatcttctttccttttttttttattaagttttcattggagttaatctag
aaatttatagaacaattgagtacatcaccctatagaacattggtctaagg
ggttaccacatactattaggaaagatcaacaaaaaggccccagtccaatg
caaccaattcattttagcttttccaccttaaggcacagttcattggaaat
gccagcactccccttttctgctttctcttctattaagccctatggtaaac
ttttcttttttactgtgccaagagacacaaaggggacacgcctggtgtta
ccctctagagggtaattttacagccagtactgccactggcttaggaaaag
cattccatgaccacagtgcaaatgcatgtaaatgacaatgtagcaactga
ggaagagatatactacgtactttgcacatgagatctccttaaaggtgtct
gccctcgagtgagctcttttcttctataacactttatcagagtacatgtt
gagggcatttagatgctttgtgacatgagcagcatccaatgta
gaattctttggttatttgaaaggaaatgggtctctggttttaacagggaa
cgtgtagctgttgaaacaggatttcggcagagtgaagggtagtagaagca
acaagctttatcagaaaagagactaaaatcaggactacccagagctaaag
gttgagggacaccgtcatgtctaccaaggcaagctcccatctgcaattgt
tacagaattacttaaactcttcaagatagacacaattgaaatattctgcc
aatttaaagttacttataatacatgtttgtggctggtaagatggctcagt
ggggacagtgcttatcggacaacctggtttgaaccccagaatccacataa
atgtggaaagagagaacggactctacaaacatttcctctgacctcgatat
tcatgttgtggcacatgcatgtatgtatacacacacacacacacacacac
acacacacagtctgcaacacacacaaataataaatcttaaaatacatgcc
tcgtcttgaaaaaaacaagagaacattttagacactcagaaaaattgatc
ccagacaggtgagttaccatagggccactggctgccttggatgaatggac
aaataattatccaaaaatggcagagccaggatgggcatgctggcttaaat
gtgtagtgagaaatgactgcacctcattctgcatccgcaataccacagct
catgcttcctgccagcacagaaactgtgagcagaggcaggaactgcatct
tcaagtagcccttaacttacagagtggggttcagtcatatgagaaggcag
cgggtcaatacccttgggaaaactgccactagctgcttttacaggaagca
gtcaatcattctggaggtcagtcttgccctgctggtcaggtaatcagcaa
cattgctgagccttgtgatggctggacctctctgggtatcgtgccttgca
ctttccccttatctctaggagcctgagaccaggcactgtttaaacgctga
gtctgaatagtggctgcctatgtcagtcatgtgtcctcctttacctgggc
tggagtgtaacccagagcagcagctgccagcacttggtgcattctagtta
ttgaagcatgcacggcagatcctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24110588_24111754
seq2: B6Ng01-117N05.b_47_1189 (reverse)

seq1  TACATTGGAATGCTGGGCCTCATGTCCAACCACAGGCATCTAAATGCCCT  50
      |||||||| ||||||   ||||||||  |    | |||||||||||||||
seq2  TACATTGG-ATGCTG---CTCATGTCACA----AAGCATCTAAATGCCCT  42

seq1  C-ACATGGTAACCTCTGATAAAGTGTTATAGGAAGAAAAGAGCTTCACTC  99
      | |||| |||  |||||||||||||||||| |||||||||||| ||||||
seq2  CAACAT-GTA--CTCTGATAAAGTGTTATA-GAAGAAAAGAGC-TCACTC  87

seq1  GAAGGGCAGACACCCTTTAAGGAGATCTCATGTTGCAAAGTACGTTAGTT  149
      | |||||||||| ||||||||||||||||||| ||||||||||| ||| |
seq2  G-AGGGCAGACA-CCTTTAAGGAGATCTCATG-TGCAAAGTACG-TAG-T  132

seq1  ATATTCTTCTTCCTCAGTTTGCTACATTGTCATTTACATGCATTTTGCAC  199
      ||||   |||||||||| |||||||||||||||||||||||| |||||||
seq2  ATAT--CTCTTCCTCAG-TTGCTACATTGTCATTTACATGCA-TTTGCAC  178

seq1  TGTGGTCATTGGAATGCTTTTTCCCTAAGCCAGTGGCAGTACTGGCTGTA  249
      |||||||| ||||||||||||  |||||||||||||||||||||||||||
seq2  TGTGGTCA-TGGAATGCTTTT--CCTAAGCCAGTGGCAGTACTGGCTGTA  225

seq1  AAATTACCCTCTAGAGGGTAACACCAGGCGTGTCCCCTTTGTGTCTCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCCTCTAGAGGGTAACACCAGGCGTGTCCCCTTTGTGTCTCTTG  275

seq1  GCACAGTAAAAAAGAAAAGTTTACCATAGGGCTTAATAGAAGAGAAAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAAAAAAGAAAAGTTTACCATAGGGCTTAATAGAAGAGAAAGCA  325

seq1  GAAAAGGGGAGTGCTGGCATTTCCAATGAACTGTGCCTTAAGGTGGAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGGAGTGCTGGCATTTCCAATGAACTGTGCCTTAAGGTGGAAAA  375

seq1  GCTAAAATGAATTGGTTGCATTGGACTGGGGCCTTTTTGTTGATCTTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATGAATTGGTTGCATTGGACTGGGGCCTTTTTGTTGATCTTTCC  425

seq1  TAATAGTATGTGGTAACCCCTTAGACCAATGTTCTATAGGGTGATGTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTATGTGGTAACCCCTTAGACCAATGTTCTATAGGGTGATGTACT  475

seq1  CAATTGTTCTATAAATTTCTAGATTAACTCCAATGAAAACTTAATAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTCTATAAATTTCTAGATTAACTCCAATGAAAACTTAATAAAAA  525

seq1  AAAAAGGAAAGAAGATATATGACCCCAAATATAAAAATTAACATTCATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAGAAGATATATGACCCCAAATATAAAAATTAACATTCATGC  575

seq1  TCACTAAAATGTGACTAGACAAATCCCTAAGGTAACTTGAAGCTCCCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAAATGTGACTAGACAAATCCCTAAGGTAACTTGAAGCTCCCCAT  625

seq1  AATCGAGTTTTAGATTTTGATTTCACATTTGCCTCCCCGGAGAGGGACCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAGTTTTAGATTTTGATTTCACATTTGCCTCCCCGGAGAGGGACCA  675

seq1  TCCTGTTGCCGAGTAGAGTTAGGGTTCAGTCCTCTAAAGGACCTGACCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGCCGAGTAGAGTTAGGGTTCAGTCCTCTAAAGGACCTGACCCA  725

seq1  GCCCCCACCAGCAGCTACTCAATTAAAGCTCGTTTGTTTGTTAGCGCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACCAGCAGCTACTCAATTAAAGCTCGTTTGTTTGTTAGCGCCAG  775

seq1  TTCATCAGCTTCAGGCCAGCGAGGGATGAAAACCGAAGGCTCTAACCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGCTTCAGGCCAGCGAGGGATGAAAACCGAAGGCTCTAACCATT  825

seq1  TGTTGGCTGTGACTTCCTGTACCCAGGTGCATTCGCTTCCTCTTCTGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTGTGACTTCCTGTACCCAGGTGCATTCGCTTCCTCTTCTGCAA  875

seq1  TGGCGAAGTAGAGTTTTGAAGATCTTTTCCCTCTACTGGAAGGCTTCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAAGTAGAGTTTTGAAGATCTTTTCCCTCTACTGGAAGGCTTCCCA  925

seq1  CTGTCATGATCTGAATGCCTTTTGAAATAATCTCCTCTTTGCACTACTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGATCTGAATGCCTTTTGAAATAATCTCCTCTTTGCACTACTGA  975

seq1  GGAAAAGGGATCCGGTTTACCCTTTATGGTAGCAAATACATCAACGTGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGGATCCGGTTTACCCTTTATGGTAGCAAATACATCAACGTGTT  1025

seq1  GACATCCATGTTAAAATGATAAATATTCAATCTTAACTATCAGCTCATCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCATGTTAAAATGATAAATATTCAATCTTAACTATCAGCTCATCC  1075

seq1  ACCCGAGTTAGGACTCAACGAACTTGGAGTGTTGGTCCTGGGCAGATCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGTTAGGACTCAACGAACTTGGAGTGTTGGTCCTGGGCAGATCCA  1125

seq1  CTGTTGTCTACAGAATTC  1167
      ||||||||||||||||||
seq2  CTGTTGTCTACAGAATTC  1143

seq1: chr13_23980241_23981376
seq2: B6Ng01-117N05.g_68_1194

seq1  GAATTCTTTGGTTATTTGAAAGGAAATGGGTCTCTGGTTTTAACAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTTATTTGAAAGGAAATGGGTCTCTGGTTTTAACAGGGAA  50

seq1  CGTGTAGCTGTTGAAACAGGATTTCGGCAGAGTGAAGGGTAGTAGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAGCTGTTGAAACAGGATTTCGGCAGAGTGAAGGGTAGTAGAAGCA  100

seq1  ACAAGCTTTATCAGAAAAGAGACTAAAATCAGGACTACCCAGAGCTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTATCAGAAAAGAGACTAAAATCAGGACTACCCAGAGCTAAAG  150

seq1  GTTGAGGGACACCGTCATGTCTACCAAGGCAAGCTCCCATCTGCAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGACACCGTCATGTCTACCAAGGCAAGCTCCCATCTGCAATTGT  200

seq1  TACAGAATTACTTAAACTCTTCAAGATAGACACAATTGAAATATTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATTACTTAAACTCTTCAAGATAGACACAATTGAAATATTCTGCC  250

seq1  AATTTAAAGTTACTTATAATACATGTTTGTGGCTGGTAAGATGGCTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGTTACTTATAATACATGTTTGTGGCTGGTAAGATGGCTCAGT  300

seq1  GGGGACAGTGCTTATCGGACAACCTGGTTTGAACCCCAGAATCCACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGTGCTTATCGGACAACCTGGTTTGAACCCCAGAATCCACATAA  350

seq1  ATGTGGAAAGAGAGAACGGACTCTACAAACATTTCCTCTGACCTCGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAAGAGAGAACGGACTCTACAAACATTTCCTCTGACCTCGATAT  400

seq1  TCATGTTGTGGCACATGCATGTATGTATACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTGTGGCACATGCATGTATGTATACACACACACACACACACACAC  450

seq1  ACACACACAGTCTGCAACACACACAAATAATAAATCTTAAAATACATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGTCTGCAACACACACAAATAATAAATCTTAAAATACATGCC  500

seq1  TCGTCTTGAAAAAAACAAGAGAACATTTTAGACACTCAGAAAAATTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTGAAAAAAACAAGAGAACATTTTAGACACTCAGAAAAATTGATC  550

seq1  CCAGACAGGTGAGTTACCATAGGGCCACTGGCTGCCTTGGATGAATGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGTGAGTTACCATAGGGCCACTGGCTGCCTTGGATGAATGGAC  600

seq1  AAATAATTATCCAAAAATGGCAGAGCCAGGATGGGCATGCTGGCTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTATCCAAAAATGGCAGAGCCAGGATGGGCATGCTGGCTTAAAT  650

seq1  GTGTAGTGAGAAATGACTGCACCTCATTCTGCATCCGCAATACCACAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTGAGAAATGACTGCACCTCATTCTGCATCCGCAATACCACAGCT  700

seq1  CATGCTTCCTGCCAGCACAGAAACTGTGAGCAGAGGCAGGAACTGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCCTGCCAGCACAGAAACTGTGAGCAGAGGCAGGAACTGCATCT  750

seq1  TCAAGTAGCCCTTAACTTACAGAGTGGGGTTCAGTCATATGAGAAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGCCCTTAACTTACAGAGTGGGGTTCAGTCATATGAGAAGGCAG  800

seq1  CGGGTCAATACCCTTGGGAAAACTGCCACTAGCTGCTTTTACAGGAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCAATACCCTTGGGAAAACTGCCACTAGCTGCTTTTACAGGAAGCA  850

seq1  GTCAATCATTCTGGAGGTCAGTCTTGCCCTGCTGGTCAGGTAATCAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCATTCTGGAGGTCAGTCTTGCCCTGCTGGTCAGGTAATCAGCAA  900

seq1  CATTGCTGAGCCTTGTGATGGCTGGACCTCTCTGGGTATCGTGCCTTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGAGCCTTGTGATGGCTGGACCTCTCTGGGTATCGTGCCTTGCA  950

seq1  CTTTCCCCTTATTCTCTAGGAGCCTGAGACCAGGCACTTGTTTAAACGCT  1000
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  CTTTCCCCTTA-TCTCTAGGAGCCTGAGACCAGGCAC-TGTTTAAACGCT  998

seq1  GAGTCTGAATAGTGGCTGCCTATGTCAGTCATGTGTTCCTCCTTTACCTG  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGTCTGAATAGTGGCTGCCTATGTCAGTCATGTG-TCCTCCTTTACCTG  1047

seq1  GGCTGGAGTGTTAACTCAGAGCAGCCAGCTGCCAGCACTGTGTGCATTCT  1100
      |||||||||| |||| |||||||| ||||||||||||||  |||||||||
seq2  GGCTGGAGTG-TAACCCAGAGCAG-CAGCTGCCAGCACTTGGTGCATTCT  1095

seq1  AAGTTATTGATAGCATGCACGTGCAGATTCCTTTCT  1136
       ||||||||| |||||||||| ||||| ||||||||
seq2  -AGTTATTGA-AGCATGCACG-GCAGA-TCCTTTCT  1127