BAC Information

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BAC

Clone NameB6Ng01-117N22
Chromosome13 (Build37)
Map Location 78,763,324 - 78,942,482
singlet/doubletdoublet
Overlap genenone
Upstream geneD13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneEG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117N22.bB6Ng01-117N22.g
ACCDH922495DH922496
length1,0611,096
definitionDH922495|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N22, 5' end.DH922496|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,763,324 - 78,764,403)(78,941,365 - 78,942,482)
sequence
gaattcacaagaaggtgaagtttctccatgcagtatatgcttattctctg
gagtattatgttcaaagggttatagcgaaagataacaaaatatctctatc
tgaagccttttcaggaaaatgtttagaatttccaaactatacacgataaa
ataggctagtgtaggaaattagttactttcaatcaacacttactatttaa
taggtataaaatagttaaagctaagagagaagagagttttagactttttg
atcatgactttccatcatttatagagagacgttgtggtcttcccatgagc
atacagaaagcatgatcttctatccaagtataagaagacatacccaaaag
tgatccatgcatttgtagaggttgggttattgtgggaacaaaagaatgct
ttatagagtttataagccaaaggagatgagattgcttcaattcatcccta
tgtttccataatgcttttgtaatgggtacaaatattaaaatgatccattt
ttgtcaaaaagagtcataacagaacagttaggttacccacccactacagg
accgtgaatcccagtggtactccaccaccttgaagcaactgaaatatttt
agtcatatttacgtgaactgtgataccaaattacattaaatacccactta
agtaaaataatcagaaaacttgctgtatgtgtctgcctaaattcgtacat
gagcctatccacatggctctctgtgttcatgggtatgtgaccatgttgta
atgagttatttcattttacgaattggctgctcagaatgcttgagcatcac
tttctgcagtgttccattatcagatcaccatcatgctaaactgtgggcca
tcttagctgatatttctgaaagtgcttacttttgaaatgaaaagcaagtc
aaaattaatataaataaataaaaccataatgctgactgaaaaaaatctta
tatttatatcaaaccctcagctaggatctcagaaccatcactgctaaatg
cagtcacctgacaaacgttctaatattaggccttggccaaccttttccga
gtgactgctaa
gaattcccaattaataactctgcctataaaggttcaccacagatgactat
tctcacctctttgaacttagtgacaacttgagtcaatgctctcctttttc
cttttgttgcagctgctccaaggttggaaaagactgttgttggaaaaaaa
aaaaaaaaaaactgttgtctgggctccaagaagtccagacaaggtctcca
gagactctatttttcctccagatccttttactgacattaatgatgaagca
gctttgtctgtgtccctgccttggttagcaatgccttggtgacagggcag
ctccagatgccctggatcagcagctgatgccatcatgtgaatgtctaaca
cttactttaggtaggtgacacttcttaatattcagccctgttttcacaat
gtcgacttgcctcaccatgcagtgtgttttttgtcattattgggattgtt
aatattttcacttgtgagttctctaaagagtactttaaaaaaaataacta
tttgtaacctttaatgccaggagggccgtatagtatgccagaagaatatg
caccacagagttcgtgtttagaaatggtaattaattttacagtcaacagt
agtgtgacacactgtctctgactagacgtccactgtggcttcctgccagt
catttggaagaatattaattgacgtccagcactcggcagcttttttcctg
ggtttctgaatgaaactacatgctttaaattaaacaaatacattccacac
ttgcatattcaacatcaggatctgaatcttgaaagcaccaaaattcagct
agcttctatctttattttcttcctctttatttcctctttgttctcttgtg
ctcctgagtcgtacaaagctctattatttgcctccccttaattttttttt
tttacctcattgcttcttttacactttttacaatctgctgtgactattgc
agccacaaactctagtctgaacttttacttctagtactgtggtttctctt
tcaagtttcagagaaacatctggaagaatgtgatactatatgagatgatc
actagctccttcagatgccagataaagatgatgtccaaaatgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_78763324_78764403
seq2: B6Ng01-117N22.b_49_1109

seq1  GAATTCACAAGAAGGTGAAGTTTCTCCATGCAGTATATGCTTATTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGAAGGTGAAGTTTCTCCATGCAGTATATGCTTATTCTCTG  50

seq1  GAGTATTATGTTCAAAGGGTTATAGCGAAAGATAACAAAATATCTCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTATGTTCAAAGGGTTATAGCGAAAGATAACAAAATATCTCTATC  100

seq1  TGAAGCCTTTTCAGGAAAATGTTTAGAATTTCCAAACTATACACGATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCTTTTCAGGAAAATGTTTAGAATTTCCAAACTATACACGATAAA  150

seq1  ATAGGCTAGTGTAGGAAATTAGTTACTTTCAATCAACACTTACTATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTAGTGTAGGAAATTAGTTACTTTCAATCAACACTTACTATTTAA  200

seq1  TAGGTATAAAATAGTTAAAGCTAAGAGAGAAGAGAGTTTTAGACTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAAAATAGTTAAAGCTAAGAGAGAAGAGAGTTTTAGACTTTTTG  250

seq1  ATCATGACTTTCCATCATTTATAGAGAGACGTTGTGGTCTTCCCATGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACTTTCCATCATTTATAGAGAGACGTTGTGGTCTTCCCATGAGC  300

seq1  ATACAGAAAGCATGATCTTCTATCCAAGTATAAGAAGACATACCCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAGCATGATCTTCTATCCAAGTATAAGAAGACATACCCAAAAG  350

seq1  TGATCCATGCATTTGTAGAGGTTGGGTTATTGTGGGAACAAAAGAATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATGCATTTGTAGAGGTTGGGTTATTGTGGGAACAAAAGAATGCT  400

seq1  TTATAGAGTTTATAAGCCAAAGGAGATGAGATTGCTTCAATTCATCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGTTTATAAGCCAAAGGAGATGAGATTGCTTCAATTCATCCCTA  450

seq1  TGTTTCCATAATGCTTTTGTAATGGGTACAAATATTAAAATGATCCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCATAATGCTTTTGTAATGGGTACAAATATTAAAATGATCCATTT  500

seq1  TTGTCAAAAAGAGTCATAACAGAACAGTTAGGTTACCCACCCACTACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAAAGAGTCATAACAGAACAGTTAGGTTACCCACCCACTACAGG  550

seq1  ACCGTGAATCCCAGTGGTACTCCACCACCTTGAAGCAACTGAAATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAATCCCAGTGGTACTCCACCACCTTGAAGCAACTGAAATATTTT  600

seq1  AGTCATATTTACGTGAACTGTGATACCAAATTACATTAAATACCCACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATTTACGTGAACTGTGATACCAAATTACATTAAATACCCACTTA  650

seq1  AGTAAAATAATCAGAAAACTTGCTGTATGTGTCTGCCTAAATTCGTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATAATCAGAAAACTTGCTGTATGTGTCTGCCTAAATTCGTACAT  700

seq1  GAGCCTATCCACATGGCTCTCTGTGTTCATGGGTATGTGACCATGTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTATCCACATGGCTCTCTGTGTTCATGGGTATGTGACCATGTTGTA  750

seq1  ATGAGTTATTTCATTTTACGAATTGGCTGCTCAGAATGCTTGAGCATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTATTTCATTTTACGAATTGGCTGCTCAGAATGCTTGAGCATCAC  800

seq1  TTTCTGCAGTGTTCCATTATCAGATCACCATCATGCTAAACTGTGGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAGTGTTCCATTATCAGATCACCATCATGCTAAACTGTGGGCCA  850

seq1  TCTTAGCTGATAATTTCTGAAAAGTGCTTACTTTTGAAATGAAAAGCAAA  900
      ||||||||||| ||||||| ||||||||||||||||||||||||||| ||
seq2  TCTTAGCTGAT-ATTTCTG-AAAGTGCTTACTTTTGAAATGAAAAGC-AA  897

seq1  GTCAAAAATAAATAATAAATAAAATAAAACCATAATGCTGACTGAAAAAA  950
      ||||||| |||   |||||| ||||||||||||||||||||||| |||||
seq2  GTCAAAATTAA--TATAAAT-AAATAAAACCATAATGCTGACTG-AAAAA  943

seq1  AATCTTTATATTTATATCAAACCCCTCAGCTAGAATCTCAGACACATCAC  1000
      |||| |||||||||||||||| ||||||||||| ||||||||  ||||||
seq2  AATC-TTATATTTATATCAAA-CCCTCAGCTAGGATCTCAGAACCATCAC  991

seq1  TGCTTAAAATGCAGTCACCTGACAAAAACCGTTCTAATTATTAGCCCCTT  1050
      ||||  ||||||||||||||||||||   |||||||| |||||| ||  |
seq2  TGCT--AAATGCAGTCACCTGACAAA---CGTTCTAA-TATTAGGCC--T  1033

seq1  GGGCGAACATTTTTCAGAGTGACTGGCTAA  1080
       ||| |||  ||||| |||||||| |||||
seq2  TGGCCAAC-CTTTTCCGAGTGACT-GCTAA  1061

seq1: chr13_78941365_78942482
seq2: B6Ng01-117N22.g_67_1162 (reverse)

seq1  AAAACCATTCTGGACATCATCCTTATCTGGCACTCTTGAAGAGCTAGTGA  50
       ||| |||| ||||||||||| |||||||||| |||  | ||||||||| 
seq2  -AAAACATTTTGGACATCATCTTTATCTGGCA-TCTGAAGGAGCTAGTG-  47

seq1  ATCATCCTCCATATTAGTATCAACATTCTTCCAGATTGTTTCTCTGGAAA  100
      ||||||   |||| ||||||| ||||||||||||| ||||||||| ||||
seq2  ATCATC--TCATA-TAGTATC-ACATTCTTCCAGA-TGTTTCTCT-GAAA  91

seq1  CCTTGGAAAGAGAAACCACAGTAACCTAGAAGTAAAAGTTTTCAGACTAG  150
      |  | ||||||||||||||||||  |||||||||||||  ||||||||||
seq2  C--TTGAAAGAGAAACCACAGTA--CTAGAAGTAAAAG--TTCAGACTAG  135

seq1  AGTTTGTGGCTGCAATAGTTCCACAGCAGATTTGTAAAAAGTTGTAAAAG  200
      |||||||||||||||||||  ||||||||| |||||||||| ||||||||
seq2  AGTTTGTGGCTGCAATAGT--CACAGCAGA-TTGTAAAAAG-TGTAAAAG  181

seq1  AAGCAATGAGGTAAAAAAAAAAAAATTAAGGGGAGGCAAATAATAAGAGC  250
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  AAGCAATGAGGT-AAAAAAAAAAAATTAAGGGGAGGCAAATAAT-AGAGC  229

seq1  TTTGTACGACTCAGGAGCACAAGAGAACAAAGAGGAAATAAAGAGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACGACTCAGGAGCACAAGAGAACAAAGAGGAAATAAAGAGGAAGA  279

seq1  AAATAAAGATAGAAGCTAGCTGAATTTTGGTGCTTTCAAGATTCAGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGATAGAAGCTAGCTGAATTTTGGTGCTTTCAAGATTCAGATCC  329

seq1  TGATGTTGAATATGCAAGTGTGGAATGTATTTGTTTAATTTAAAGCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGAATATGCAAGTGTGGAATGTATTTGTTTAATTTAAAGCATGT  379

seq1  AGTTTCATTCAGAAACCCAGGAAAAAAGCTGCCGAGTGCTGGACGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATTCAGAAACCCAGGAAAAAAGCTGCCGAGTGCTGGACGTCAAT  429

seq1  TAATATTCTTCCAAATGACTGGCAGGAAGCCACAGTGGACGTCTAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTTCCAAATGACTGGCAGGAAGCCACAGTGGACGTCTAGTCAG  479

seq1  AGACAGTGTGTCACACTACTGTTGACTGTAAAATTAATTACCATTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGTGTCACACTACTGTTGACTGTAAAATTAATTACCATTTCTAA  529

seq1  ACACGAACTCTGTGGTGCATATTCTTCTGGCATACTATACGGCCCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAACTCTGTGGTGCATATTCTTCTGGCATACTATACGGCCCTCCTG  579

seq1  GCATTAAAGGTTACAAATAGTTATTTTTTTTAAAGTACTCTTTAGAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAAGGTTACAAATAGTTATTTTTTTTAAAGTACTCTTTAGAGAAC  629

seq1  TCACAAGTGAAAATATTAACAATCCCAATAATGACAAAAAACACACTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTGAAAATATTAACAATCCCAATAATGACAAAAAACACACTGCA  679

seq1  TGGTGAGGCAAGTCGACATTGTGAAAACAGGGCTGAATATTAAGAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGGCAAGTCGACATTGTGAAAACAGGGCTGAATATTAAGAAGTGT  729

seq1  CACCTACCTAAAGTAAGTGTTAGACATTCACATGATGGCATCAGCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCTAAAGTAAGTGTTAGACATTCACATGATGGCATCAGCTGCTG  779

seq1  ATCCAGGGCATCTGGAGCTGCCCTGTCACCAAGGCATTGCTAACCAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGCATCTGGAGCTGCCCTGTCACCAAGGCATTGCTAACCAAGGC  829

seq1  AGGGACACAGACAAAGCTGCTTCATCATTAATGTCAGTAAAAGGATCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACAGACAAAGCTGCTTCATCATTAATGTCAGTAAAAGGATCTGG  879

seq1  AGGAAAAATAGAGTCTCTGGAGACCTTGTCTGGACTTCTTGGAGCCCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAATAGAGTCTCTGGAGACCTTGTCTGGACTTCTTGGAGCCCAGA  929

seq1  CAACAGTTTTTTTTTTTTTTTTTTTCCAACAACAGTCTTTTCCAACCTTG  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAG-TTTTTTTTTTTTTTTTTTCCAACAACAGTCTTTTCCAACCTTG  978

seq1  GAGCAGCTGCAACAAAAGGAAAAAGGAGAGCATTGACTCAAGTTGTCACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTGCAACAAAAGGAAAAAGGAGAGCATTGACTCAAGTTGTCACT  1028

seq1  AAGTTCAAAGAGGTGAGAATAGTCATCTGTGGTGAACCTTTATAGGCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAAGAGGTGAGAATAGTCATCTGTGGTGAACCTTTATAGGCAGA  1078

seq1  GTTATTAATTGGGAATTC  1118
      ||||||||||||||||||
seq2  GTTATTAATTGGGAATTC  1096