BAC Information

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BAC

Clone NameB6Ng01-118C04
Chromosome13 (Build37)
Map Location 38,442,814 - 38,591,597
singlet/doubletdoublet
Overlap geneBmp6
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C04.bB6Ng01-118C04.g
ACCDH922696DH922697
length1,1461,148
definitionDH922696|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C04, 5' end.DH922697|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,590,445 - 38,591,597)(38,442,814 - 38,443,989)
sequence
gaattctgtgagggagggaggaggatggggtggaaatgctacagtttgtc
ttgacagagattagtacattctcacaccaccgagagtcaacacaaaacac
gtaactacaacagtagacagaaggcacctccacagagcctgctgatggcc
aggctgcaggtcctgtgtgagctgcccttgctgggaatggaacctgaaag
agtgcccttctcccctccattcggatgtctgcaaaaatctccctgggatg
ggtgctgtagagccaccaccgggtctttcaacccagggatatttaatatt
ccttcaagtttactctctacttacaccacaagcagctagatctaaaagct
aaaactactccgggcggggttgggggaggcgaacattaggtaactgcagt
ttccaggcctgtactacaagccttccagcttcctgcagaccagcaactgc
tcagttaggaactgggaaagcccttgacaaggtcctcataaaagcctccg
tgggtaaggcaccagcgggagatgtgtctgcgtgtcacgatccctctgtg
tgtcaccatcccgcttcgctgtgctgttgttcgtggtttaaggcagatgt
tgttgttaggaatccaaggcagaaccatgcccccacccacacacacacac
cagcttcaacttaatggcaccacaagctctcacgaccatattcctgtact
ttttcaagatgacattggagttatcatcgaagtaaagaaccgagatggca
ttcagtttggttggtgcgcagcatggtttgggggacgtactcggggattc
ataaggtggacctgtttccagaatagaagtgtgggagggcactgttagaa
atgacaccagatctaggctcgatcccatttacagccgggttgggagcact
caccaaggtctgtacaatggcgtggttggtggcattcatggtgtgcgttg
gagtgggaaggaacacttctcatcccagtagttggcagcgtagcctttgg
gtcatgatccagtccttgaaataagtaaagggatgcattgtatgatcaca
gccacccttattcatctgctcttcagtgccccaagaaagctttgttccgt
ggtgccaaatggggaactggcaaggagtttgggaattgccaagttc
gaattcctcttgggaaacataaattagaagaaaaatggaatactccctgc
ttgtatctgtaaccagagacactgtactggctttcgcttataaacagagg
ctcagtaccacagcttttcatttgggctgctcatacttatcgagaatatt
tatttatttatttatttagtaatagaaaatatatttgttgcctgtaagct
atcctcagcaaaaggggctgggagaatttgaaagagtgtggtccagggaa
gagggagatgtttgcccccaagagttttaaatgtgaaattcagtggcttt
tcaccaaagaagctggacaaagtgttcttcagcttgagatcaaagggcaa
gcagataccattgtttctccttcagatgtcgcttcctctggttgtccttc
taagaatgggtataaatcctttttttaaacgtgctgagtcatgctcagtt
cctctgtttaagcttgcctctgattagcttggagaaggctttccctggac
tgtgggaatctctatgttaagtgaggagaaggcgataggcagcattttct
ttacaagtcacgattgcatctcctctgtgtctgcatgtcttcagagtcca
acggctttgtgtgctggatttcatcttctagggctgggactagaactcag
ggtcccaaacatgctaagcccacactcagccattgatccatccccagccc
caaagtagtatgctgcatatgaatatgggtgagggctttgaatacttgct
atcaagaatagtgggaggaactctaacaataactgatcagtttgtctcag
gctgggcttactgaagaagtggagttagcaagtggagggtgaatcccatt
tgcgttaactttgcacaatcagtcctgtgttctgctttccagccaaatca
gaagaggcacttgtctagggatgatattttcataacttgatagaaaatat
tgagtttgttttatattcattttgacccccagcccctcctccctgcttct
cctctttctgattcacctcattggctcagcatggaaagagtagcagtatt
aatggaggtaatttgtttttgattgaagctgtcttgagtatctaggttag
cagcagaatcggagcggtgaatcatcagagagacatggctagtagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38590445_38591597
seq2: B6Ng01-118C04.b_41_1186 (reverse)

seq1  GAACTTGGGCAATTCCCAAAACTCCCTG-CATGTCCCCATATTGTGCACC  49
      |||||| |||||||||| ||||||| || ||  ||||||| ||| |||||
seq2  GAACTT-GGCAATTCCC-AAACTCCTTGCCAGTTCCCCAT-TTG-GCACC  46

seq1  ACGG-ACAAAGCCTTCTCTTGGGGCCACTGAGAGTGCAGATGGAATAGGG  98
      |||| |||||||  | |||||||| |||||| || |||||| ||||| ||
seq2  ACGGAACAAAGC--TTTCTTGGGG-CACTGA-AGAGCAGAT-GAATAAGG  91

seq1  TTGCCTGGTGATCCTTCACTGCTTCCTTTTGCTTTATCTCAAGGACTGGA  148
       || || |||||| | || ||| ||| ||| | |||| ||||||||||||
seq2  GTGGCT-GTGATCATACAATGCATCCCTTTAC-TTATTTCAAGGACTGGA  139

seq1  TCATTGCACCCAAAGGCTACGCTGCCAACTACTGTGATGGAGAGTGTTCC  198
      ||||   ||||||||||||||||||||||||||| ||||   ||||||||
seq2  TCAT--GACCCAAAGGCTACGCTGCCAACTACTGGGATGAGAAGTGTTCC  187

seq1  TTCCCACT-CAACGCACA-CATGAATGCCACCAACCACGCCATTGTACAG  246
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCCACTCCAACGCACACCATGAATGCCACCAACCACGCCATTGTACAG  237

seq1  ACCTTGGTGAGTGCT-CCAACCCGGCTGTAAATGGGATCGAGCCTAGATC  295
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTGAGTGCTCCCAACCCGGCTGTAAATGGGATCGAGCCTAGATC  287

seq1  TGGTGTCATTTCTAACAGTGCCCTCCCACACTTCTATTCTGGAAACAGGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCATTTCTAACAGTGCCCTCCCACACTTCTATTCTGGAAACAGGT  337

seq1  CCACCTTATGAAT-CCCGAGTACGT-CCCCAAACCATGCTGCGCACCAAC  393
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  CCACCTTATGAATCCCCGAGTACGTCCCCCAAACCATGCTGCGCACCAAC  387

seq1  CAAACTGAATGCCATCTCGGTTCTTTACTTCGATGATAACTCCAATGTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAATGCCATCTCGGTTCTTTACTTCGATGATAACTCCAATGTCA  437

seq1  TCTTGAAAAAGTACAGGAATATGGTCGTGAGAGCTTGTGGTTGCCATTAA  493
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTTGAAAAAGTACAGGAATATGGTCGTGAGAGCTTGTGG-TGCCATTAA  486

seq1  GTTGAAGCTGGTGTGTGTGTGTGGGTGGGGGCATGGTTCTGCCTTGGATT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGCTGGTGTGTGTGTGTGGGTGGGGGCATGGTTCTGCCTTGGATT  536

seq1  CCTAACAACAACATCTGCCTTAAACCACGAACAACAGCACAGCGAAGCGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAACAACATCTGCCTTAAACCACGAACAACAGCACAGCGAAGCGG  586

seq1  GATGGTGACACACAGAGGGATCGTGACACGCAGACACATCTCCCGCTGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGACACACAGAGGGATCGTGACACGCAGACACATCTCCCGCTGGT  636

seq1  GCCTTACCCACGGAGGCTTTTATGAGGACCTTGTCAAGGGCTTTCCCAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACCCACGGAGGCTTTTATGAGGACCTTGTCAAGGGCTTTCCCAGT  686

seq1  TCCTAACTGAGCAGTTGCTGGTCTGCAGGAAGCTGGAAGGCTTGTAGTAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTGAGCAGTTGCTGGTCTGCAGGAAGCTGGAAGGCTTGTAGTAC  736

seq1  AGGCCTGGAAACTGCAGTTACCTAATGTTCGCCTCCCCCAACCCCGCCCG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGAAACTGCAGTTACCTAATGTTCGCCTCCCCCAACCCCGCCCG  786

seq1  GAGTAGTTTTAGCTTTTAGATCTAGCTGCTTGTGGTGTAAGTAGAGAGTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTTTAGCTTTTAGATCTAGCTGCTTGTGGTGTAAGTAGAGAGTA  836

seq1  AACTTGAAGGAATATTAAATATCCCTGGGTTGAAAGACCCGGTGGTGGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAGGAATATTAAATATCCCTGGGTTGAAAGACCCGGTGGTGGCT  886

seq1  CTACAGCACCCATCCCAGGGAGATTTTTGCAGACATCCGAATGGAGGGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCACCCATCCCAGGGAGATTTTTGCAGACATCCGAATGGAGGGGA  936

seq1  GAAGGGCACTCTTTCAGGTTCCATTCCCAGCAAGGGCAGCTCACACAGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCACTCTTTCAGGTTCCATTCCCAGCAAGGGCAGCTCACACAGGA  986

seq1  CCTGCAGCCTGGCCATCAGCAGGCTCTGTGGAGGTGCCTTCTGTCTACTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCTGGCCATCAGCAGGCTCTGTGGAGGTGCCTTCTGTCTACTG  1036

seq1  TTGTAGTTACGTGTTTTGTGTTGACTCTCGGTGGTGTGAGAATGTACTAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTACGTGTTTTGTGTTGACTCTCGGTGGTGTGAGAATGTACTAA  1086

seq1  TCTCTGTCAAGACAAACTGTAGCATTTCCACCCCATCCTCCTCCCTCCCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCAAGACAAACTGTAGCATTTCCACCCCATCCTCCTCCCTCCCT  1136

seq1  CACAGAATTC  1153
      ||||||||||
seq2  CACAGAATTC  1146

seq1: chr13_38442814_38443989
seq2: B6Ng01-118C04.g_67_1214

seq1  GAATTCCTCTTGGGAAACATAAATTAGAAGAAAAATGGAATACTCCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGGGAAACATAAATTAGAAGAAAAATGGAATACTCCCTGC  50

seq1  TTGTATCTGTAACCAGAGACACTGTACTGGCTTTCGCTTATAAACAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTGTAACCAGAGACACTGTACTGGCTTTCGCTTATAAACAGAGG  100

seq1  CTCAGTACCACAGCTTTTCATTTGGGCTGCTCATACTTATCGAGAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACCACAGCTTTTCATTTGGGCTGCTCATACTTATCGAGAATATT  150

seq1  TATTTATTTATTTATTTAGTAATAGAAAATATATTTGTTGCCTGTAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTAGTAATAGAAAATATATTTGTTGCCTGTAAGCT  200

seq1  ATCCTCAGCAAAAGGGGCTGGGAGAATTTGAAAGAGTGTGGTCCAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCAAAAGGGGCTGGGAGAATTTGAAAGAGTGTGGTCCAGGGAA  250

seq1  GAGGGAGATGTTTGCCCCCAAGAGTTTTAAATGTGAAATTCAGTGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGATGTTTGCCCCCAAGAGTTTTAAATGTGAAATTCAGTGGCTTT  300

seq1  TCACCAAAGAAGCTGGACAAAGTGTTCTTCAGCTTGAGATCAAAGGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAGAAGCTGGACAAAGTGTTCTTCAGCTTGAGATCAAAGGGCAA  350

seq1  GCAGATACCATTGTTTCTCCTTCAGATGTCGCTTCCTCTGGTTGTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATACCATTGTTTCTCCTTCAGATGTCGCTTCCTCTGGTTGTCCTTC  400

seq1  TAAGAATGGGTATAAATCCTTTTTTTAAACGTGCTGAGTCATGCTCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGGGTATAAATCCTTTTTTTAAACGTGCTGAGTCATGCTCAGTT  450

seq1  CCTCTGTTTAAGCTTGCCTCTGATTAGCTTGGAGAAGGCTTTCCCTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTAAGCTTGCCTCTGATTAGCTTGGAGAAGGCTTTCCCTGGAC  500

seq1  TGTGGGAATCTCTATGTTAAGTGAGGAGAAGGCGATAGGCAGCATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAATCTCTATGTTAAGTGAGGAGAAGGCGATAGGCAGCATTTTCT  550

seq1  TTACAAGTCACGATTGCATCTCCTCTGTGTCTGCATGTCTTCAGAGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTCACGATTGCATCTCCTCTGTGTCTGCATGTCTTCAGAGTCCA  600

seq1  ACGGCTTTGTGTGCTGGATTTCATCTTCTAGGGCTGGGACTAGAACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTTTGTGTGCTGGATTTCATCTTCTAGGGCTGGGACTAGAACTCAG  650

seq1  GGTCCCAAACATGCTAAGCCCACACTCAGCCATTGATCCATCCCCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAAACATGCTAAGCCCACACTCAGCCATTGATCCATCCCCAGCCC  700

seq1  CAAAGTAGTATGCTGCATATGAATATGGGTGAGGGCTTTGAATACTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGTATGCTGCATATGAATATGGGTGAGGGCTTTGAATACTTGCT  750

seq1  ATCAAGAATAGTGGGAGGAACTCTAACAATAACTGATCAGTTTGTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAATAGTGGGAGGAACTCTAACAATAACTGATCAGTTTGTCTCAG  800

seq1  GCTGGGCTTACTGAAGAAGTGGAGTTAGCAAAGTGGAGGGTGAATCCCAT  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGGGCTTACTGAAGAAGTGGAGTTAGC-AAGTGGAGGGTGAATCCCAT  849

seq1  TTGCGTTAACTTTGCACAAATCAGTCCTGTGTTCTGCTTTCCAGCCAAAT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGCGTTAACTTTGCAC-AATCAGTCCTGTGTTCTGCTTTCCAGCCAAAT  898

seq1  CAGAAGAGGCACTTGTCTAGGGAATGAATATTTCATAACTTGATAGAAAA  950
      |||||||||||||||||||||| ||||   ||||||||||||||||||||
seq2  CAGAAGAGGCACTTGTCTAGGG-ATGATATTTTCATAACTTGATAGAAAA  947

seq1  TTATTGAGTTTGTTTTTAATATTCATTTTGAACCCCCAAGCCCCCTCCTC  1000
       |||||||||||||||  |||||||||||| |||||||   |||||||| 
seq2  -TATTGAGTTTGTTTT--ATATTCATTTTG-ACCCCCA--GCCCCTCCT-  990

seq1  CCCTGCTTTCTCTCTTTTCTGATTCACCTTCATTGGCTTCCAGCAATGGA  1050
      |||||| |||||   ||||||||||||| |||||||||  |||| |||||
seq2  CCCTGC-TTCTCCTCTTTCTGATTCACC-TCATTGGCT--CAGC-ATGGA  1035

seq1  AAGAAAGTAGGCAGTATTTTAAT-GAGGTAATTTTGTTTCTGATTAGAAG  1099
      |||  |||| ||||||  ||||| ||||||| ||||||| ||||| ||||
seq2  AAG--AGTA-GCAGTA--TTAATGGAGGTAA-TTTGTTTTTGATT-GAAG  1078

seq1  CTGTCATGAGTATCTAGTTTAAAGCAGCAGAAATCAGAGCAGTGGAAATC  1149
      ||||| ||||||||||| ||  |||||||| |||| |||| |||  ||||
seq2  CTGTCTTGAGTATCTAGGTT--AGCAGCAG-AATCGGAGCGGTG--AATC  1123

seq1  AATACAGGAGGACGATGCTAGTAGTCA  1176
      |   |||   |||   |||||||||||
seq2  A--TCAGAGAGACATGGCTAGTAGTCA  1148