BAC Information

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BAC

Clone NameB6Ng01-119M07
Chromosome13 (Build37)
Map Location 102,509,821 - 102,710,300
singlet/doubletdoublet
Overlap genePik3r1
Upstream geneMrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
Downstream geneCd180, Mast4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119M07.bB6Ng01-119M07.g
ACCDH923893DH923894
length1,123776
definitionDH923893|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M07, 5' end.DH923894|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,709,171 - 102,710,300)(102,509,821 - 102,510,602)
sequence
gaattccagagtgacaattaatgtccatatttctaccaatgttcttctta
tgattatgcttttccttcatgtgttgctttggtttgttttttcttgatac
aagctaaagtcatctgagaagtgggaagttcaattaagaaaaataccacc
acatcaggttgtctgtaggcaactctgtgcgccattttcttgattaacaa
ttgatgtaggaggaaccaacctactaggagtagtgccattcctagttagg
tagtcctaggtggtatgaaaagtgcaagctgagagaaccatgaggaataa
gatggtaggcagtgttccttctaagtttctgcttcagttttgtctccaag
ttcttcctttaaactctttccctgacttctcttcatgtacaagtgttagc
tatggattgacacaaactccgtcctcttcacattgcttctggttctagta
tttatcccataaataaaagactagagtatatgtcttcctcctcttagata
tacacagtcttattgcactggagcctatatggcctcattcatatttcttc
cactcctgcaaaaccatggctccaatacacaatggacattggggtttcaa
catatgaaattggtaagcacacaatttagttcacatcagaacccaaacaa
ttcgagtaagtggttttcttaagtacacagaggtgaagaacgagctagaa
agacttaggatagcctcctgaacttagaggaaccaacatttaacaagtta
ggtcttactatgtgccgacagaaataaaaaatgttcaaacatcttagaag
caacagttttctacttccttttttagtattcctggatatggaaagtctac
agttacatttacattggtctgaagtccaagattaagtgacgctgaacaca
gctttcttctttttcaaaccacggaaatcattgaaattgatcatcacatt
tcatataataatagaaataatgtcacatagttcacgtagttgaaaattac
ttcatctagaaagtcatgcttctaccctgaagaaagcaagccatagttgg
gggattagaaaagtctagatagttcatcagagctgtaagttcaagcgcct
tgtggtctcagtaggaatgcatc
gaattctggcaggaagcaagtctcatcagagactgacattttgtttagtt
tacaaaaaaaaaaaaaaaaaaaaaaaaaaaggagggggagaaagaggagg
aggaagaggaagaggaggaagaagaggaggaggcagcagtatcggccttt
ctgtagaaacttgcaatttccattatgtggtgtctggagagggaggaagg
aggaagtcttctttatctataagcactgtaatttatgatgactcgtgtga
aatataaatgaaaaatgtgaccctctgaggcagaggtcaacaaattttat
tcccacttagatccagttttctctgccaaaccactggctttccctggata
ggcattcaactgacccagacactaagggctgagtccatgggtgacaaaca
caggaaggactttccacagtgggaaatgctcagctgtggcttggctttgt
gggtaagcctgggctccgtgcacttcctacctcagaggcgtgatgaggag
cctgaccccagtactggggatacccgattcctaaaaaggagggaacaatg
tatcctggagctatggcatctcaaagccctctactcagtctcgtggaccc
aacgtgggaaaacactgggatgcttcagaacagaagagctttgttccttg
cccattgtcctctggaaacaggacttcaaagataaacattacttccattc
ttctttatgtctttcgggaccccctgctcctacaaactttttttttgcaa
ttatgcccagatgtgaacccaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_102709171_102710300
seq2: B6Ng01-119M07.b_50_1172 (reverse)

seq1  GATGCAATTTCTACTGAGACCACAAGGCGCTTTGATAACCTACAGCTCTG  50
      ||||| ||| ||||||||||||||||||||||    ||| ||||||||||
seq2  GATGC-ATTCCTACTGAGACCACAAGGCGCTT---GAACTTACAGCTCTG  46

seq1  AATGAACTATCTAGGACCTTTTCTTAATCCCCCAACTATGGCTTTGCTTT  100
       |||||||||||||   |||||| |||||||||||||||||| |||||||
seq2  -ATGAACTATCTAG--ACTTTTC-TAATCCCCCAACTATGGC-TTGCTTT  91

seq1  CTTCAGGGTAGGAGCATGGCTTTCTAGATGAAGTAATTTTCCACTACGTG  150
      ||||||||||| |||||| |||||||||||||||||||||| ||||||||
seq2  CTTCAGGGTAGAAGCATGACTTTCTAGATGAAGTAATTTTCAACTACGTG  141

seq1  AACTATGTGACATTATTTCTATTA-TATATGAAATGTGATGATCAATTTC  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACTATGTGACATTATTTCTATTATTATATGAAATGTGATGATCAATTTC  191

seq1  AATGATTTCCGTGGTTTG-AAAAGAAGAAAGCTGTGTTCAGCGTCACTTA  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATGATTTCCGTGGTTTGAAAAAGAAGAAAGCTGTGTTCAGCGTCACTTA  241

seq1  ATCTTGGACTTCAGACCAATGTAAATGTAACTGTAGACTTTCCATATCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGACTTCAGACCAATGTAAATGTAACTGTAGACTTTCCATATCCA  291

seq1  GGAATACTAAAAAAGGAAGTAGAAAACTGTTGCTTCTAAGATGTTTGAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACTAAAAAAGGAAGTAGAAAACTGTTGCTTCTAAGATGTTTGAAC  341

seq1  ATTTTTTATTTCTGTCGGCACATAGTAAGACCTAACTTGTTAAATGTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTTCTGTCGGCACATAGTAAGACCTAACTTGTTAAATGTTGG  391

seq1  TTCCTCTAAGTTCAGGAGGCTATCCTAAGTCTTTCTAGCTCGTTCTTCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTAAGTTCAGGAGGCTATCCTAAGTCTTTCTAGCTCGTTCTTCAC  441

seq1  CTCTGTGTACTTAAGAAAACCACTTACTCGAATTGTTTGGGTTCTGATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTACTTAAGAAAACCACTTACTCGAATTGTTTGGGTTCTGATGT  491

seq1  GAACTAAATTGTGTGCTTACCAATTTCATATGTTGAAACCCCAATGTCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAATTGTGTGCTTACCAATTTCATATGTTGAAACCCCAATGTCCA  541

seq1  TTGTGTATTGGAGCCATGGTTTTGCAGGAGTGGAAGAAATATGAATGAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTGGAGCCATGGTTTTGCAGGAGTGGAAGAAATATGAATGAGG  591

seq1  CCATATAGGCTCCAGTGCAATAAGACTGTGTATATCTAAGAGGAGGAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGGCTCCAGTGCAATAAGACTGTGTATATCTAAGAGGAGGAAGA  641

seq1  CATATACTCTAGTCTTTTATTTATGGGATAAATACTAGAACCAGAAGCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTCTAGTCTTTTATTTATGGGATAAATACTAGAACCAGAAGCAA  691

seq1  TGTGAAGAGGACGGAGTTTGTGTCAATCCATAGCTAACACTTGTACATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGAGGACGGAGTTTGTGTCAATCCATAGCTAACACTTGTACATGA  741

seq1  AGAGAAGTCAGGGAAAGAGTTTAAAGGAAGAACTTGGAGACAAAACTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTCAGGGAAAGAGTTTAAAGGAAGAACTTGGAGACAAAACTGAA  791

seq1  GCAGAAACTTAGAAGGAACACTGCCTACCATCTTATTCCTCATGGTTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACTTAGAAGGAACACTGCCTACCATCTTATTCCTCATGGTTCTC  841

seq1  TCAGCTTGCACTTTTCATACCACCTAGGACTACCTAACTAGGAATGGCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGCACTTTTCATACCACCTAGGACTACCTAACTAGGAATGGCAC  891

seq1  TACTCCTAGTAGGTTGGTTCCTCCTACATCAATTGTTAATCAAGAAAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTAGTAGGTTGGTTCCTCCTACATCAATTGTTAATCAAGAAAATG  941

seq1  GCGCACAGAGTTGCCTACAGACAACCTGATGTGGTGGTATTTTTCTTAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACAGAGTTGCCTACAGACAACCTGATGTGGTGGTATTTTTCTTAAT  991

seq1  TGAACTTCCCACTTCTCAGATGACTTTAGCTTGTATCAAGAAAAAACAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCCCACTTCTCAGATGACTTTAGCTTGTATCAAGAAAAAACAAA  1041

seq1  CCAAAGCAACACATGAAGGAAAAGCATAATCATAAGAAGAACATTGGTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAACACATGAAGGAAAAGCATAATCATAAGAAGAACATTGGTAG  1091

seq1  AAATATGGACATTAATTGTCACTCTGGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  AAATATGGACATTAATTGTCACTCTGGAATTC  1123

seq1: chr13_102509821_102510602
seq2: B6Ng01-119M07.g_69_844

seq1  GAATTCTGGCAGGAAGCAAGTCTCATCAGAGACTGACATTTTGTTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCAGGAAGCAAGTCTCATCAGAGACTGACATTTTGTTTAGTT  50

seq1  TACAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGGGGGAGAAAGAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGGGGGAGAAAGAGGAGG  100

seq1  AGGAAGAGGAAGAGGAGGAAGAAGAGGAGGAGGCAGCAGTATCGGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGAAGAGGAGGAAGAAGAGGAGGAGGCAGCAGTATCGGCCTTT  150

seq1  CTGTAGAAACTTGCAATTTCCATTATGTGGTGTCTGGAGAGGGAGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAACTTGCAATTTCCATTATGTGGTGTCTGGAGAGGGAGGAAGG  200

seq1  AGGAAGTCTTCTTTATCTATAAGCACTGTAATTTATGATGACTCGTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCTTCTTTATCTATAAGCACTGTAATTTATGATGACTCGTGTGA  250

seq1  AATATAAATGAAAAATGTGACCCTCTGAGGCAGAGGTCAACAAATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATGAAAAATGTGACCCTCTGAGGCAGAGGTCAACAAATTTTAT  300

seq1  TCCCACTTAGATCCAGTTTTCTCTGCCAAACCACTGGCTTTCCCTGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTAGATCCAGTTTTCTCTGCCAAACCACTGGCTTTCCCTGGATA  350

seq1  GGCATTCAACTGACCCAGACACTAAGGGCTGAGTCCATGGGTGACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCAACTGACCCAGACACTAAGGGCTGAGTCCATGGGTGACAAACA  400

seq1  CAGGAAGGACTTTCCACAGTGGGAAATGCTCAGCTGTGGCTTGGCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGACTTTCCACAGTGGGAAATGCTCAGCTGTGGCTTGGCTTTGT  450

seq1  GGGTAAGCCTGGGCTCCGTGCACTTCCTACCTCAGAGGCGTGATGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGCCTGGGCTCCGTGCACTTCCTACCTCAGAGGCGTGATGAGGAG  500

seq1  CCTGACCCCAGTACTGGGGATACCCGATTCCTAAAAAGGAGGGAACAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCCAGTACTGGGGATACCCGATTCCTAAAAAGGAGGGAACAATG  550

seq1  TATCCTGGAGCTATGGCATCTCAAAGCCCTCTACTCAGTCTCGTGGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGAGCTATGGCATCTCAAAGCCCTCTACTCAGTCTCGTGGACCC  600

seq1  AACGTGGGAAAACACTGGGATGCTTCAGAACAGAAGAGCGTTTGTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACGTGGGAAAACACTGGGATGCTTCAGAACAGAAGAGC-TTTGTTCCTT  649

seq1  GCCCCAGTGTCCTCTGGAAACAGGACTTCAAAGATAAACATTACGTCCAT  700
      | |||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  G-CCCATTGTCCTCTGGAAACAGGACTTCAAAGATAAACATTACTTCCAT  698

seq1  TCATCTTCATGTCTTCACGGAACCACCCTGCACCTACAAACTTCACTTTT  750
      || |||| |||||||  ||| ||| |||||| |||||||||||   ||||
seq2  TCTTCTTTATGTCTT-TCGGGACC-CCCTGCTCCTACAAACTTTTTTTTT  746

seq1  GCAAATTATGCCCAAGATGTGAACCCAACTTT  782
      || |||||||||| |||||||||||||| |||
seq2  GC-AATTATGCCC-AGATGTGAACCCAATTTT  776