BAC Information

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BAC

Clone NameB6Ng01-120E24
Chromosome13 (Build37)
Map Location 63,662,314 - 63,770,526
singlet/doubletdoublet
Overlap genePtch1
Upstream geneLOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
Downstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120E24.bB6Ng01-120E24.g
ACCDH924287DH924288
length580703
definitionDH924287|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E24, 5' end.DH924288|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,662,314 - 63,662,899)(63,769,824 - 63,770,526)
sequence
aatgaccaccacaaccatcagacatgtattcctcaaagcagggactcgcg
gtgttctgactgctgaacactaaatttgataccatatcaaatgctctcct
cgatgcgcttaactacatttatgaaacatgcttcttgcgaaggcaagagt
tgaatgaatgaatgaatgaatgaatgaggccaaggcagtgtcagactaaa
tgacctaaatcaatggaaagcaaaatgaacatgaagggacctgcagacca
cactcctagttatcatatgattctcatttgaacagagagacacctattat
atgaaatattacattcatataccatcatgtcctaaaattaaagtcacgga
tattttattgacttgtaaggtaaagtgttaggcccaagaaccaatgagcc
atactaaaatggcaatgcagaaaggagctaaggcctctaagcctagccag
agttggggtgtagctcagagaaggaggatttgcctaacatggtggtgccc
taggttccatagctgtattagcagaaaacaaacaaactatcaagatacca
aaagcaggaggggggaagtgggtaggggtg
gaattccttcctggatgaggctttctggagagttagacctccctgcaggc
agcctcctctgctaaaggcaccctgctgatgggacaggctgtgcaggggc
agcagaaacaaaaacacccagtgccccagagtgacttggggttaggttac
aaggccaaagtcagcccgaaagggactctagctagacttgctatggcagt
aacttctaggttcagtccagtaaccccaaattcgggtcagaaacccatta
gctggaaggttttgtcacatggccagtttttatgagctgggagaaatgct
aggtttatctaaagctaaagcacagcttccctttcacatttatttcttca
atcaacaaatacttagccacagtctgttgctacagctcctgctccgggca
cggagattgctagggaatctgggaagctcgcactgtccccgtggaagcag
acagcagcaaggagacttttaagacacagagtagctcagcctgtgccagg
agaaagggggcagcagacagtgtagataaagggtttaagtcagggtctga
ggcaggactggtttcctggaattatgggccagtgaaagccatatactcca
aaggggcaagatcttggagactcatgctgagattgaaactgttgacaatt
tatgttttcattacattgtgtgtgtgtgtttgtgtgtgtgtggtgtgtgt
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63662314_63662899
seq2: B6Ng01-120E24.b_50_635

seq1  GAATTCAATGACCACCACAACCATCAGACATGTATTCCTCAAAGCAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGACCACCACAACCATCAGACATGTATTCCTCAAAGCAGGGA  50

seq1  CTCGCGGTGTTCTGACTGCTGAACACTAAATTTGATACCATATCAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCGGTGTTCTGACTGCTGAACACTAAATTTGATACCATATCAAATGC  100

seq1  TCTCCTCGATGCGCTTAACTACATTTATGAAACATGCTTCTTGCGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCGATGCGCTTAACTACATTTATGAAACATGCTTCTTGCGAAGGC  150

seq1  AAGAGTTGAATGAATGAATGAATGAATGAATGAGGCCAAGGCAGTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGAATGAATGAATGAATGAATGAATGAGGCCAAGGCAGTGTCAG  200

seq1  ACTAAATGACCTAAATCAATGGAAAGCAAAATGAACATGAAGGGACCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGACCTAAATCAATGGAAAGCAAAATGAACATGAAGGGACCTGC  250

seq1  AGACCACACTCCTAGTTATCATATGATTCTCATTTGAACAGAGAGACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACACTCCTAGTTATCATATGATTCTCATTTGAACAGAGAGACACC  300

seq1  TATTATATGAAATATTACATTCATATACCATCATGTCCTAAAATTAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGAAATATTACATTCATATACCATCATGTCCTAAAATTAAAGT  350

seq1  CACGGATATTTTATTGACTTGTAAGGTAAAGTGTTAGGCCCAAGAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATATTTTATTGACTTGTAAGGTAAAGTGTTAGGCCCAAGAACCAA  400

seq1  TGAGCCATACTAAAATGGCAATGCAGAAAGGAGCTAAGGCCTCTAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATACTAAAATGGCAATGCAGAAAGGAGCTAAGGCCTCTAAGCCT  450

seq1  AGCCAGAGTTGGGGTGTAGCTCAGAGAAGGAGGATTTGCCTAACATGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGTTGGGGTGTAGCTCAGAGAAGGAGGATTTGCCTAACATGGTG  500

seq1  GTGCCCTAGGTTCCATAGCTGTATTAGCAGAAAACAAACAAACTATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTAGGTTCCATAGCTGTATTAGCAGAAAACAAACAAACTATCAAG  550

seq1  ATACCAAAAGCAGGAGGGGGGAAGTGGGTAGGGGTG  586
      ||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAAGCAGGAGGGGGGAAGTGGGTAGGGGTG  586

seq1: chr13_63769824_63770526
seq2: B6Ng01-120E24.g_69_771 (reverse)

seq1  CACACACACACACACACACACACAAACACACACACACAATGTAATGAAAA  50
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACAC-CACACACACACAAACACACACACACAATGTAATGAAAA  49

seq1  CATAAATTGTCAACAGTTTCAATCTCAGCATGAGTCTCCAAGATCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTGTCAACAGTTTCAATCTCAGCATGAGTCTCCAAGATCTTGCC  99

seq1  CCTTTGGAGTATATGGCTTTCACTGG-CCATAATTCCAGGAAACCAGTCC  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTTTGGAGTATATGGCTTTCACTGGCCCATAATTCCAGGAAACCAGTCC  149

seq1  TGCCTCAGACCCTGACTTAAACCCTTTATCTACACTGTCTGCTGCCCCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGACCCTGACTTAAACCCTTTATCTACACTGTCTGCTGCCCCCT  199

seq1  TTCTCCTGGCACAGGCTGAGCTACTCTGTGTCTTAAAAGTCTCCTTGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGGCACAGGCTGAGCTACTCTGTGTCTTAAAAGTCTCCTTGCTG  249

seq1  CTGTCTGCTTCCACGGGGACAGTGCGAGCTTCCCAGATTCCCTAGCAATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCTTCCACGGGGACAGTGCGAGCTTCCCAGATTCCCTAGCAATC  299

seq1  TCCGTGCCCGGAGCAGGAGCTGTAGCAACAGACTGTGGCTAAGTATTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGCCCGGAGCAGGAGCTGTAGCAACAGACTGTGGCTAAGTATTTGT  349

seq1  TGATTGAAGAAATAAATGTGAAAGGGAAGCTGTGCTTTAGCTTTAGATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAGAAATAAATGTGAAAGGGAAGCTGTGCTTTAGCTTTAGATAA  399

seq1  ACCTAGCATTTCTCCCAGCTCATAAAAACTGGCCATGTGACAAAACCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCATTTCTCCCAGCTCATAAAAACTGGCCATGTGACAAAACCTTC  449

seq1  CAGCTAATGGGTTTCTGACCCGAATTTGGGGTTACTGGACTGAACCTAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATGGGTTTCTGACCCGAATTTGGGGTTACTGGACTGAACCTAGA  499

seq1  AGTTACTGCCATAGCAAGTCTAGCTAGAGTCCCTTTCGGGCTGACTTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGCCATAGCAAGTCTAGCTAGAGTCCCTTTCGGGCTGACTTTGG  549

seq1  CCTTGTAACCTAACCCCAAGTCACTCTGGGGCACTGGGTGTTTTTGTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAACCTAACCCCAAGTCACTCTGGGGCACTGGGTGTTTTTGTTTC  599

seq1  TGCTGCCCCTGCACAGCCTGTCCCATCAGCAGGGTGCCTTTAGCAGAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCCTGCACAGCCTGTCCCATCAGCAGGGTGCCTTTAGCAGAGGA  649

seq1  GGCTGCCTGCAGGGAGGTCTAACTCTCCAGAAAGCCTCATCCAGGAAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTGCAGGGAGGTCTAACTCTCCAGAAAGCCTCATCCAGGAAGGA  699

seq1  ATTC  703
      ||||
seq2  ATTC  703