BAC Information

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BAC

Clone NameB6Ng01-122D03
Chromosome13 (Build37)
Map Location 98,651,830 - 98,750,511
singlet/doubletdoublet
Overlap geneRgnef
Upstream geneLOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream geneLOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122D03.bB6Ng01-122D03.g
ACCDH925686DH925687
length9611,025
definitionDH925686|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D03, 5' end.DH925687|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,749,562 - 98,750,511)(98,651,830 - 98,652,863)
sequence
gaattctgcctttctaacaattgtagtaatagtggactgattattaagaa
ttttttttattacaaatatttttttgctaggaggttgtaagagaagaaga
gccagtgtaacacttggtcaagccacatacagtaatgtcacctgcatggg
gtgtgtgggaaatcttactcatggtcacatctgcttctctctctctctct
ctctctctctctctctctctctctctctctctcctttcacctgtgctctt
agaggacctaggagggcagagggcagattttttttctccttgacactatt
actggtgtcttatcagatgctccaagaaactccttagccacattgatgct
ttaccttggccatggtgtaggtaattattaaaggagctgctttctttggg
attctcttatttagactaatcagtttttgaaaaaaaaaaaaaaaaaaaaa
aaaaaaaggacccatgaaagggacttatcccagaccttgtaggctcactg
caacagacaagccactttcccagtttcctgatgcttatatagtacaaatc
accattataacagctggccattttaaattaataccttctaattaaattat
ctttaaatcatctaaacatctaagcattaaagaaaggggctactaaattg
ggccctccctttgcatagtggggaattgcttttaatactagaaatcaatt
ccactgaaaataaatatgtttatcatccaaaatttgattaagttaaagat
ctaaagatccttatttccttaacacattgaaaaacgtgtgtaccctagtg
aaatacagtgtccaggagagtttctttaagaatagggtttattcccattt
ttgtgtgagcattttttccaacctcctgccaaaaaatggaaattttttgt
cgggggatgttaaaagaaccttttccgacttttattaatttaaagatact
tagctcagttc
gaattctttgtcccacggagatgggaccaaatgctcagtaggaccggcaa
ggggacatgctccataaggaaagagggggcaggacagctgttcatcacct
gtcccatctatacgtactatatatacggaaaaggaagacccagtgcactg
tctgtcctcttcagtcaaacttcaggagtttgcttctttgtccctgtgcc
ttgctccttagaggccctgcccattcatttctttgccatcttggtggttt
ctgctatgttctaggctgttaggtgacttgtatacttagggagccaatta
tgcccaccctctatgcctcttcccttcctgacttaccaccacaccctttt
attacagttgccctttccttaaaaccacacacagccattagcttcttacg
gcctttcccagggttgtccctccatgctcgtgggaaccaaaccgagtagc
taactttcccacctcttccaaacttatcacccacaccttcaaagctttcc
ctcttccaacccacacaatgagttgagggaaagagagggaaattggttct
tccggagtctgggatagaaaagtggttggtgtggaatactgggagctaga
ggaacattaaggtcagccccgaggtgaagagtagagctgctcgggcgggg
ccgagcctgagagccatagccagaagccccagagggttgaacaggagtta
aaaaaaaaaaaaaaaaaacgctcaggccccgggtgaggaaaggggggaac
ctggagaaggatgagtcacacgggataacacactgcctggggagatgcaa
aggaggagtctctgcagagcaagtcaaggcaggagaagcaggagtaagag
atgagtcccggggcaggagtcgggaactcctgaacgacgatgaaagagga
aacttggaggaatacagagagactatatgtgaaacagagaaagggggatg
tatagtgatcgcagggctgagactacattcgactatgtagacagcattga
cagcattctccctcctccccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_98749562_98750511
seq2: B6Ng01-122D03.b_45_1005 (reverse)

seq1  GAACTGAGCTTAAGTAACTTTTAAATTTATAAAAGTCAGAAAAGGTTCTT  50
      ||||||||| |||||| | |||||||| ||||||||| ||||||||||||
seq2  GAACTGAGC-TAAGTATC-TTTAAATTAATAAAAGTCGGAAAAGGTTCTT  48

seq1  TTCAACATCCCCAAACAAAAAATGTCCAATTTCTGGCATGAGGTTGGTAA  100
      || |||||||||  ||||||||| |||| ||| ||||| |||||||| ||
seq2  TT-AACATCCCCCGACAAAAAATTTCCATTTTTTGGCAGGAGGTTGGAAA  97

seq1  AACTGCTCAC-CATAAAATCGTATAAACCCTATTCTT-TAGAAACTCTCC  148
      || ||||||| || |||   | |||||||||||||||  |||||||||||
seq2  AAATGCTCACACAAAAATGGGAATAAACCCTATTCTTAAAGAAACTCTCC  147

seq1  T-GACACTGT-TTTCAATA-GGTACACACGTATTTCAAATGTGTTA--GG  193
      | |||||||| ||||| || ||||||||||| |||| |||||||||  | 
seq2  TGGACACTGTATTTCACTAGGGTACACACGTTTTTC-AATGTGTTAAGGA  196

seq1  AATATGGATCTTTAGATCTTAACTTTAATCAA--TTTTGCTGAT-AACCT  240
      |||| ||||||||||||||| |  ||||||||  ||| | |||| ||| |
seq2  AATAAGGATCTTTAGATCTTTAACTTAATCAAATTTTGGATGATAAACAT  246

seq1  A-TTATTTTCAGT-GAATTGATTTCTAGTATTAAAGTCAATT-CCCACTA  287
      | ||||||||||| |||||||||||||||||||||  ||||| |||||||
seq2  ATTTATTTTCAGTGGAATTGATTTCTAGTATTAAAAGCAATTCCCCACTA  296

seq1  TGCAAAGGGA-GGACCAATTTAGTAG-CACTTTCTTTAATGCTTAGATGT  335
      |||||||||| || |||||||||||| | |||||||||||||||||||||
seq2  TGCAAAGGGAGGGCCCAATTTAGTAGCCCCTTTCTTTAATGCTTAGATGT  346

seq1  TTAGATGATTTAAAGATAATTTAATTAGAATGTATTAATTTAAAATGGAC  385
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TTAGATGATTTAAAGATAATTTAATTAGAAGGTATTAATTTAAAATGGCC  396

seq1  AGTTGTTATAATGGTGATTTGTACTATATAAGCATCAGGAAACTGGGAAA  435
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTATAATGGTGATTTGTACTATATAAGCATCAGGAAACTGGGAAA  446

seq1  GTGGCTTGTCTGTTGCAGTGAGCCTACAAGGTCTGGGATAAGTCCCTTTC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGTCTGTTGCAGTGAGCCTACAAGGTCTGGGATAAGTCCCTTTC  496

seq1  ATGTGTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAACTGATTAG  535
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAACTGATTAG  546

seq1  TCTAAATAAGAGAATCCCAAAGAAAGCAGCTCCTTTAATAATTACCTACA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAAGAGAATCCCAAAGAAAGCAGCTCCTTTAATAATTACCTACA  596

seq1  CCATGGCCAAGGTAAAGCATCAATGTGGCTAAGGAGTTTCTTGGAGCATC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCAAGGTAAAGCATCAATGTGGCTAAGGAGTTTCTTGGAGCATC  646

seq1  TGATAAGACACCAGTAATAGTGTCAAGGAGAAAAAAAATCTGCCCTCTGC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGACACCAGTAATAGTGTCAAGGAGAAAAAAAATCTGCCCTCTGC  696

seq1  CCTCCTAGGTCCTCTAAGAGCACAGGTGAAAGGAGAGAGAGAGAGAGAGA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGTCCTCTAAGAGCACAGGTGAAAGGAGAGAGAGAGAGAGAGA  746

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAGATGTGACCATGAGTA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAGATGTGACCATGAGTA  796

seq1  AGATTTCCCACACACCCCATGCAGGTGACATTACTGTATGTGGCTTGACC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCCACACACCCCATGCAGGTGACATTACTGTATGTGGCTTGACC  846

seq1  AAGTGTTACACTGGCTCTTCTTCTCTTACAACCTCCTAGCAAAAAAATAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTACACTGGCTCTTCTTCTCTTACAACCTCCTAGCAAAAAAATAT  896

seq1  TTGTAATAAAAAAAATTCTTAATAATCAGTCCACTATTACTACAATTGTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAAAAAAAATTCTTAATAATCAGTCCACTATTACTACAATTGTT  946

seq1  AGAAAGGCAGAATTC  950
      |||||||||||||||
seq2  AGAAAGGCAGAATTC  961

seq1: chr13_98651830_98652863
seq2: B6Ng01-122D03.g_68_1092

seq1  GAATTCTTTGTCCCACGGAGATGGGACCAAATGCTCAGTAGGACCGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCCCACGGAGATGGGACCAAATGCTCAGTAGGACCGGCAA  50

seq1  GGGGACATGCTCCATAAGGAAAGAGGGGGCAGGACAGCTGTTCATCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATGCTCCATAAGGAAAGAGGGGGCAGGACAGCTGTTCATCACCT  100

seq1  GTCCCATCTATACGTACTATATATACGGAAAAGGAAGACCCAGTGCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCTATACGTACTATATATACGGAAAAGGAAGACCCAGTGCACTG  150

seq1  TCTGTCCTCTTCAGTCAAACTTCAGGAGTTTGCTTCTTTGTCCCTGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCTTCAGTCAAACTTCAGGAGTTTGCTTCTTTGTCCCTGTGCC  200

seq1  TTGCTCCTTAGAGGCCCTGCCCATTCATTTCTTTGCCATCTTGGTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTTAGAGGCCCTGCCCATTCATTTCTTTGCCATCTTGGTGGTTT  250

seq1  CTGCTATGTTCTAGGCTGTTAGGTGACTTGTATACTTAGGGAGCCAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATGTTCTAGGCTGTTAGGTGACTTGTATACTTAGGGAGCCAATTA  300

seq1  TGCCCACCCTCTATGCCTCTTCCCTTCCTGACTTACCACCACACCCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCCTCTATGCCTCTTCCCTTCCTGACTTACCACCACACCCTTTT  350

seq1  ATTACAGTTGCCCTTTCCTTAAAACCACACACAGCCATTAGCTTCTTACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTGCCCTTTCCTTAAAACCACACACAGCCATTAGCTTCTTACG  400

seq1  GCCTTTCCCAGGGTTGTCCCTCCATGCTCGTGGGAACCAAACCGAGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCCAGGGTTGTCCCTCCATGCTCGTGGGAACCAAACCGAGTAGC  450

seq1  TAACTTTCCCACCTCTTCCAAACTTATCACCCACACCTTCAAAGCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCCCACCTCTTCCAAACTTATCACCCACACCTTCAAAGCTTTCC  500

seq1  CTCTTCCAACCCACACAATGAGTTGAGGGAAAGAGAGGGAAATTGGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAACCCACACAATGAGTTGAGGGAAAGAGAGGGAAATTGGTTCT  550

seq1  TCCGGAGTCTGGGATAGAAAAGTGGTTGGTGTGGAATACTGGGAGCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGTCTGGGATAGAAAAGTGGTTGGTGTGGAATACTGGGAGCTAGA  600

seq1  GGAACATTAAGGTCAGCCCCGAGGTGAAGAGTAGAGCTGCTCGGGCGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTAAGGTCAGCCCCGAGGTGAAGAGTAGAGCTGCTCGGGCGGGG  650

seq1  CCGAGCCTGAGAGCCATAGCCAGAAGCCCCAGAGGGTTGAACAGGAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCGAGCCTGAGAGCCATAGCCAGAAGCCCCAGAGGGTTGAACAGGAGTT-  699

seq1  AAAAAAAAAAAAAAAAAAAAACGCTCAGGCCCCGGGTGAGGAAAGGTGGG  750
        |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  --AAAAAAAAAAAAAAAAAAACGCTCAGGCCCCGGGTGAGGAAAGGGGGG  747

seq1  AACCTGGAGAAGGAATGAGTCACACGGGATAACACACTGCCTGGGGAGAT  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACCTGGAGAAGG-ATGAGTCACACGGGATAACACACTGCCTGGGGAGAT  796

seq1  GCAAAGGAGGAGTCTCTGCAGAGCAAGTCAAGGCAGGAGAAGCAGGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAGGAGTCTCTGCAGAGCAAGTCAAGGCAGGAGAAGCAGGAGTA  846

seq1  AGAGATGAGTCCCGGGGCAGGAGTCGGGAACTCCTGAACGACGATGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAGTCCCGGGGCAGGAGTCGGGAACTCCTGAACGACGATGAAAG  896

seq1  AGGAGACTTGGAGGAATACAGAGAGACTTATATGTGAAACAAGAGGACAG  950
      |||| |||||||||||||||||||||| |||||||||||| ||| || ||
seq2  AGGAAACTTGGAGGAATACAGAGAGAC-TATATGTGAAAC-AGA-GAAAG  943

seq1  GTGGGATGTATAGTGATCTGCAAGGGCTGAGACTACATTCGACTATGTAG  1000
      | |||||||||||||||| || ||||||||||||||||||||||||||||
seq2  G-GGGATGTATAGTGATC-GC-AGGGCTGAGACTACATTCGACTATGTAG  990

seq1  ACAGCATTGACAGCATTCTCCCT-CTCCCCCTCCC  1034
      ||||||||||||||||||||||| |||||||||||
seq2  ACAGCATTGACAGCATTCTCCCTCCTCCCCCTCCC  1025