BAC Information

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BAC

Clone NameB6Ng01-122L24
Chromosome13 (Build37)
Map Location 50,606,607 - 50,761,538
singlet/doubletdoublet
Overlap geneGm904
Upstream geneCenpp, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044
Downstream geneLOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122L24.bB6Ng01-122L24.g
ACCDH926094DH926095
length1,0701,118
definitionDH926094|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L24, 5' end.DH926095|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,760,464 - 50,761,538)(50,606,607 - 50,607,455)
sequence
gaattcaactaccaaactcaaggcactctgaagaatcaggagcccctcct
cctgccaccactgtgctgtgtgtcaggtcctactggacatacccaataca
caaagtgtggagggacaggacctagggagtcatgctcccctttacccagt
catttccatctgcacacattgcacattgtcaagccatggtggacactgcc
ctgctgttatcccataggaactcctaggtatccagcctttcccccagtgc
ccagcttgtcccatgtatactagtatatcagagcctattggattcccttg
atccctgtagctaacgcacatcttctgccagttctcataacatactggga
attctgatgcacacttccaccctctgttactttactgttgtgtttcagga
tttgttatgcatcttctgacaatccttccctccttctttcatagttcctt
tcctagcagtgtagggggaggggcagcagcagcatggtatcatagctagc
agcatgtgtgtttgtttgtgtgtgtgtatgtgtgtgtgttggcagattta
ccctgctggtcctccatttgtacaattattaggctgaaaggtcatgtctt
atcttttccagctgaagctgcaacaaaattcctgaacaggatgcgaaagt
gtttcagctgagccttgagaggtgaacgtaccttggcacctgtcccctgg
atgggacaacttgaggaagggccatcaatattcctgttccctacccagga
cactgctaatgtgcatatgaggagtaagtccaccactaactctctatccc
tgaagggttttcactgtcctgaagtaggcacaactgtgtaggcccagcag
tcatgtcactgatgcagaagaaatgtagagagcagcatggcagatgcctg
ctgtgtgtgctacactgattgtctaaatgcaagacaaacactaaggttct
tcctggcagtgagtgaagagaaaccagcatggatgatacaaacgagagga
ggacgttattactggaagggatgaggagagcatggcatcttatttgggat
agccacatcttgtctccagc
gaattcagtgagaatggtacctattcagtaacattcaaatctatttctag
taaagatcatgaaattaattaggcattacaatgatcagagctacaatagc
tcaggactagtctgcagagtgattacttaggacagtagcagagtctcacc
caaacaagggaacacacaatggcctagcgaataggtagctgttaaccatt
aaccatgaaagagttagggaacccccctgagacagagttcttcactaggc
ccaaaggaacagcataatcaggcatttactaagaacccctggtggtgggc
ttaacaatagactagcattacacctggctcccttcttagtggtaaacagc
agctggtccctgccatcttttgttgtatacattccttttgttttgtgtca
ctgtaactctggggatgtgtcctgcctggcttttcttgattttcttctgc
atataaaagtctggtgttcatttggacaatacactcagaatcaacacact
ctctcgtgtcatgtctgtcattcgactccttcacccacctgcaaccagag
acccattcctccaagatcagagacccagaaaatggattagtgtgtggcag
ttggtgcccaaacaggtactaggacaggaaattccctaaagaactattta
tgaacagttccacttccccatatccaaatgcccttcatttcccactacct
cttgtggggtggtaggccagagaggaggttgaactatattaaagtaggtt
gtgaaaaatatatgactacaaagagaaatactggggctcagaaaagaagg
aacaaaatatggagaaggatctatttctgactgattcataagcagtattt
ggaaggagggagcagggaaagggacacaggaagtgctgcttgtttggagg
ctggaaagtggctgtgcagcctctctactgccaggatccctttggtgatg
agtaggcacagcagtgtgatgtgcccagagccctcttgaacatctcaact
ggaccttaaggacctcaatgtcttaagagctgcactggtttcagaaagag
ggatttctcttcgtaagagtagctttatggacctggggatagaccagctc
catgaacacagaaatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50760464_50761538
seq2: B6Ng01-122L24.b_51_1120 (reverse)

seq1  GCTGGAG-CAGGATGTGGCT-TCCCAAATAGGATGCCAATGCTCTCCTCA  48
      ||||||| || ||||||||| ||||||||| |||||| ||||||||||||
seq2  GCTGGAGACAAGATGTGGCTATCCCAAATAAGATGCC-ATGCTCTCCTCA  49

seq1  TCCCCTTCAGGTAATAAACCTTCCTCCTCTCTTTTGTCTCATCTCTGCTT  98
      | ||||||  |||||||  | |||||||||| ||||| |||||  ||| |
seq2  T-CCCTTCCAGTAATAA--CGTCCTCCTCTCGTTTGTATCATCCATGC-T  95

seq1  GGTTTCTCTTTCACTCACTGCCAGGAGGACCCTTGGTGTTTGTCTTGCAT  148
      |||||||| ||||||||||||||||| || |||| |||||||||||||||
seq2  GGTTTCTC-TTCACTCACTGCCAGGAAGAACCTTAGTGTTTGTCTTGCAT  144

seq1  TTAGACAATCAGTGTAGCCCACACAGCAGGCATCTGCCATGCTGCTCTCT  198
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAGACAATCAGTGTAGCACACACAGCAGGCATCTGCCATGCTGCTCTCT  194

seq1  ACATTTCTTCTGCATCAGTGACATGACCTGCTGGGCCTACACAGTTGTGC  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACATTTCTTCTGCATCAGTGACATGA-CTGCTGGGCCTACACAGTTGTGC  243

seq1  CTACTTCAGGACAGTGAAAACCCTTCAGGGATAGAGAGTTAGTGGTGGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCAGGACAGTGAAAACCCTTCAGGGATAGAGAGTTAGTGGTGGAC  293

seq1  TTACTCCTCATATGCACATTAGCAGTGTCCTGGGTAGGGAACAGGAATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTCATATGCACATTAGCAGTGTCCTGGGTAGGGAACAGGAATAT  343

seq1  TGATGGCCCTTCCTCAAGTTGTCCCATCCAGGGGACAGGTGCCAAGGTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCCCTTCCTCAAGTTGTCCCATCCAGGGGACAGGTGCCAAGGTAC  393

seq1  GTTCACCTCTCAAGGCTCAGCTGAAACACTTTCGCATCCTGTTCAGGAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCTCTCAAGGCTCAGCTGAAACACTTTCGCATCCTGTTCAGGAAT  443

seq1  TTTGTTGCAGCTTCAGCTGGAAAAGATAAGACATGACCTTTCAGCCTAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCAGCTTCAGCTGGAAAAGATAAGACATGACCTTTCAGCCTAAT  493

seq1  AATTGTACAAATGGAGGACCAGCAGGGTAAATCTGCCAACACACACACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACAAATGGAGGACCAGCAGGGTAAATCTGCCAACACACACACAT  543

seq1  ACACACACACAAACAAACACACATGCTGCTAGCTATGATACCATGCTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAACAAACACACATGCTGCTAGCTATGATACCATGCTGCT  593

seq1  GCTGCCCCTCCCCCTACACTGCTAGGAAAGGAACTATGAAAGAAGGAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCCTCCCCCTACACTGCTAGGAAAGGAACTATGAAAGAAGGAGGG  643

seq1  AAGGATTGTCAGAAGATGCATAACAAATCCTGAAACACAACAGTAAAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGTCAGAAGATGCATAACAAATCCTGAAACACAACAGTAAAGTA  693

seq1  ACAGAGGGTGGAAGTGTGCATCAGAATTCCCAGTATGTTATGAGAACTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGTGGAAGTGTGCATCAGAATTCCCAGTATGTTATGAGAACTGG  743

seq1  CAGAAGATGTGCGTTAGCTACAGGGATCAAGGGAATCCAATAGGCTCTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGTGCGTTAGCTACAGGGATCAAGGGAATCCAATAGGCTCTGA  793

seq1  TATACTAGTATACATGGGACAAGCTGGGCACTGGGGGAAAGGCTGGATAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAGTATACATGGGACAAGCTGGGCACTGGGGGAAAGGCTGGATAC  843

seq1  CTAGGAGTTCCTATGGGATAACAGCAGGGCAGTGTCCACCATGGCTTGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTTCCTATGGGATAACAGCAGGGCAGTGTCCACCATGGCTTGAC  893

seq1  AATGTGCAATGTGTGCAGATGGAAATGACTGGGTAAAGGGGAGCATGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCAATGTGTGCAGATGGAAATGACTGGGTAAAGGGGAGCATGACT  943

seq1  CCCTAGGTCCTGTCCCTCCACACTTTGTGTATTGGGTATGTCCAGTAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGTCCTGTCCCTCCACACTTTGTGTATTGGGTATGTCCAGTAGGA  993

seq1  CCTGACACACAGCACAGTGGTGGCAGGAGGAGGGGCTCCTGATTCTTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACACAGCACAGTGGTGGCAGGAGGAGGGGCTCCTGATTCTTCAG  1043

seq1  AGTGCCTTGAGTTTGGTAGTTGAATTC  1075
      |||||||||||||||||||||||||||
seq2  AGTGCCTTGAGTTTGGTAGTTGAATTC  1070

seq1: chr13_50606607_50607455
seq2: B6Ng01-122L24.g_339_1183

seq1  ATTTACTAAGAACCCCTGGTGGTGGGCTTAACAATAGACTAGCATTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAAGAACCCCTGGTGGTGGGCTTAACAATAGACTAGCATTACAC  50

seq1  CTGGCTCCCTTCTTAGTGGTAAACAGCAGCTGGTCCCTGCCATCTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCCTTCTTAGTGGTAAACAGCAGCTGGTCCCTGCCATCTTTTGT  100

seq1  TGTATACATTCCTTTTGTTTTGTGTCACTGTAACTCTGGGGATGTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACATTCCTTTTGTTTTGTGTCACTGTAACTCTGGGGATGTGTCCT  150

seq1  GCCTGGCTTTTCTTGATTTTCTTCTGCATATAAAAGTCTGGTGTTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTTTTCTTGATTTTCTTCTGCATATAAAAGTCTGGTGTTCATTT  200

seq1  GGACAATACACTCAGAATCAACACACTCTCTCGTGTCATGTCTGTCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATACACTCAGAATCAACACACTCTCTCGTGTCATGTCTGTCATTC  250

seq1  GACTCCTTCACCCACCTGCAACCAGAGACCCATTCCTCCAAGATCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTCACCCACCTGCAACCAGAGACCCATTCCTCCAAGATCAGAGA  300

seq1  CCCAGAAAATGGATTAGTGTGTGGCAGTTGGTGCCCAAACAGGTACTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAATGGATTAGTGTGTGGCAGTTGGTGCCCAAACAGGTACTAGG  350

seq1  ACAGGAAATTCCCTAAAGAACTATTTATGAACAGTTCCACTTCCCCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAATTCCCTAAAGAACTATTTATGAACAGTTCCACTTCCCCATAT  400

seq1  CCAAATGCCCTTCATTTCCCACTACCTCTTGT-GGGTGGTAGGCCAGAGA  449
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCAAATGCCCTTCATTTCCCACTACCTCTTGTGGGGTGGTAGGCCAGAGA  450

seq1  GGAGGTTGAACTATATTAAAGTAGGTTGTGAAAAATATATGACTACAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTGAACTATATTAAAGTAGGTTGTGAAAAATATATGACTACAAAG  500

seq1  AGAAATACTGGGGCTCAG-AAAGAAGGAACAAAATATGGAG-AGGATCTA  547
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  AGAAATACTGGGGCTCAGAAAAGAAGGAACAAAATATGGAGAAGGATCTA  550

seq1  TTTCTGACTGATTCATAAGCAGTATTTGGAAGGAGGGAGCAGGG-AAGGG  596
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCTGACTGATTCATAAGCAGTATTTGGAAGGAGGGAGCAGGGAAAGGG  600

seq1  ACACAGGAAGTGCTGCTTGGTTGGAGGCTGGAAAGTGGCTGTGGCAGCCT  646
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  ACACAGGAAGTGCTGCTTGTTTGGAGGCTGGAAAGTGGCTGT-GCAGCCT  649

seq1  CTCTACTGCCAGGATCCCTTT-GTGATGAGTAGGCCACAGCAGTGTGATG  695
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  CTCTACTGCCAGGATCCCTTTGGTGATGAGTAGG-CACAGCAGTGTGATG  698

seq1  TGCCCAGAGCCCTCCTGACACATCTCAAACTGAGCTTTAGGA-CTCAGTG  744
      |||||||||||||| ||| |||||||||   || ||| |||| |||| ||
seq2  TGCCCAGAGCCCTCTTGA-ACATCTCAACTGGACCTTAAGGACCTCAATG  747

seq1  TCCTGAGAGCTGCACTGGGTTTCAGAAGAAGGGGAATTTTCTCCTTCTGA  794
      || | ||||||||||| ||||||||||  ||||    ||||| ||||  |
seq2  TCTTAAGAGCTGCACT-GGTTTCAGAAAGAGGG---ATTTCT-CTTCGTA  792

seq1  AGAGTAGCTTTATGGACTTGTGGATGAGCACCAGCTCCATGGACACAGCA  844
      ||||||||||||||||| || |||| || |||||||||||| |||||| |
seq2  AGAGTAGCTTTATGGACCTGGGGAT-AG-ACCAGCTCCATGAACACAGAA  840

seq1  ATGGA  849
      ||| |
seq2  ATGTA  845