BAC Information

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BAC

Clone NameB6Ng01-123E07
Chromosome6 (Build37)13 (Build37)
Map Location 18,835,448 - 18,835,96825,765,191 - 25,766,301
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E07.bB6Ng01-123E07.g
ACCDH926480DH926481
length9941,099
definitionDH926480|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E07, 5' end.DH926481|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,448 - 18,835,968)(25,765,191 - 25,766,301)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgacgatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
tctgagatcttctttaatttctttcttcagagatttgaagtttttatcat
acagatctttcacctccttagttagagtcacgcccagatatttatattat
ttgtgactattgagaaggtgtgtttccctatttctttctcagcc
gaattctaatgttttgacaatctgacatgattaatttagatacacaaact
gtgtgtatactgaggaggtcccaaacaccacagtaaaagctactgagcag
cagtgcttgacagaagcctgaccaagtccttagataaagcttgcctctgt
agaggaaggggatgctagtagacaggataagagaacaaaagtatcattga
gaacacccatacccagctacagaaactgaaaaatgtggatagaaacacaa
tataaacaaaaattcaaactgtataactgaagactgatttataaaacaat
gaagtcttttaattataccatctgataggatttttatgtcaggaaataga
tcataccaatcacattgtaaggtcctttaaagatgccttgtgggaaatcc
ataaactccacttgtatataagcaatacaaagcgtttcatggctacagat
cacttactttccctagaccctcaaatatatggtaagtaatacatattcat
atttaacatgctttatacacacatcagttcatatacatattattcaacat
gcacacataatctatataaaacactccatctattctctccaggcctttca
ctgttctatgtcttattgctgagtaatatacaatgtctgaatccccaaat
ttgttttcttaatcagttgtgggtcattttagtcatttctcgttgggaat
tatataggtaaagaatctgtcaatattcaaatatcaatcttgttttgttg
ttctttcttggataaatatctaggaagagaattactgttgcctggtttta
aaaaaatgtctttcagattctttgtgggcccagtatctgcacctgcttga
acaagttagcctctcccctgacctagagatgatcaatactgcatctctct
tcactgtcaccttgccagtgactgtgtgttgatgctcatggtgttacatg
atactgaactctttcacctgtttcttgagcagtcctcattctaagagttt
ccttttcctatgaatcctttgctttttctactggactggtgaacgttcct
gtcaaaaataaatgtcaagaaaggtctctcccgatctgtggctcatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835448_18835968
seq2: B6Ng01-123E07.b_48_569 (reverse)

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGAACCCACACACCTATGGTCACTTGATCGTCGACAAGGGAGCTAAAAC  50

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100

seq1  GGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGT  150
      |||||||||| |||||||||||| |||||||||||||||||||||| |||
seq2  GGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGT  150

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250

seq1  GAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAG  299
       ||||||||| ||||||||||||||||||||||| |||||||| || | |
seq2  CAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCG  300

seq1  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  350

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  400

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  450

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGG  499
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGG  500

seq1  CTCAGAACTGAACAAAGAATTC  521
      ||||||||||||||||||||||
seq2  CTCAGAACTGAACAAAGAATTC  522

seq1: chr13_25765191_25766301
seq2: B6Ng01-123E07.g_66_1164 (reverse)

seq1  AAAATGAGCAACAGATCTGGAGAGAACTTTCCTGACATATATTTCTGACA  50
      ||||||||| ||||||| ||||||| ||||| |||||| ||||| |||| 
seq2  AAAATGAGCCACAGATCGGGAGAGACCTTTCTTGACATTTATTTTTGAC-  49

seq1  AGGAACGTTCA-CAGTCCAGTAAGAAAAAAGCAAAGGATCCAATAAGAAA  99
      ||||||||||| ||||||||||   |||||||||||||| ||   || ||
seq2  AGGAACGTTCACCAGTCCAGTA--GAAAAAGCAAAGGATTCA--TAGGAA  95

seq1  AAGGAAACTCTTTAGAAATGAAGGAACTGCTCAAGAAACAGGTGACAAGA  149
      |||||||||| |||| |||||  | |||||||||||||||||||| ||||
seq2  AAGGAAACTC-TTAG-AATGA--GGACTGCTCAAGAAACAGGTGA-AAGA  140

seq1  GTTCAGTATCATGTGACCACCATGAGCATCAACACACAGTCACTGGCAAG  199
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  GTTCAGTATCATGT-AACACCATGAGCATCAACACACAGTCACTGGCAAG  189

seq1  GTGACAGTGAAGAGAGATGCAGTATTGATCATCTCTAGGTCAGGGGAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTGAAGAGAGATGCAGTATTGATCATCTCTAGGTCAGGGGAGAG  239

seq1  GCTAACTTGTTCAAGCAGGTGCAGATACTGGGCCCACAAAGAACTCTGAA  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTAACTTGTTCAAGCAGGTGCAGATACTGGGCCCACAAAGAA-TCTGAA  288

seq1  AGACATTTTTTTTAAAACCAGGCAACAGTAATTCTCTTCCTAGATATTTA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACA-TTTTTTTAAAACCAGGCAACAGTAATTCTCTTCCTAGATATTTA  337

seq1  TCCAAGAAAGAACAACAAAACAAGATTGATATTTGAATATTGACAGATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAAGAACAACAAAACAAGATTGATATTTGAATATTGACAGATTC  387

seq1  TTTACCTATATAATTCCCAACGAGAAATGACTAAAATGACCCACAACTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTATATAATTCCCAACGAGAAATGACTAAAATGACCCACAACTGA  437

seq1  TTAAGAAAACAAATTTGGGGATTCAGACATTGTATATTACTCAGCAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAACAAATTTGGGGATTCAGACATTGTATATTACTCAGCAATAA  487

seq1  GACATAGAACAGTGAAAGGCCTGGAGAGAATAGATGGAGTGTTTTATATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGAACAGTGAAAGGCCTGGAGAGAATAGATGGAGTGTTTTATATA  537

seq1  GATTATGTGTGCATGTTGAATAATATGTATATGAACTGATGTGTGTATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTGTGCATGTTGAATAATATGTATATGAACTGATGTGTGTATAA  587

seq1  AGCATGTTAAATATGAATATGTATTACTTACCATATATTTGAGGGTCTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTTAAATATGAATATGTATTACTTACCATATATTTGAGGGTCTAG  637

seq1  GGAAAGTAAGTGATCTGTAGCCATGAAACGCTTTGTATTGCTTATATACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAAGTGATCTGTAGCCATGAAACGCTTTGTATTGCTTATATACA  687

seq1  AGTGGAGTTTATGGATTTCCCACAAGGCATCTTTAAAGGACCTTACAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTTTATGGATTTCCCACAAGGCATCTTTAAAGGACCTTACAATG  737

seq1  TGATTGGTATGATCTATTTCCTGACATAAAAATCCTATCAGATGGTATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTATGATCTATTTCCTGACATAAAAATCCTATCAGATGGTATAA  787

seq1  TTAAAAGACTTCATTGTTTTATAAATCAGTCTTCAGTTATACAGTTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGACTTCATTGTTTTATAAATCAGTCTTCAGTTATACAGTTTGAA  837

seq1  TTTTTGTTTATATTGTGTTTCTATCCACATTTTTCAGTTTCTGTAGCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTATATTGTGTTTCTATCCACATTTTTCAGTTTCTGTAGCTGG  887

seq1  GTATGGGTGTTCTCAATGATACTTTTGTTCTCTTATCCTGTCTACTAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTGTTCTCAATGATACTTTTGTTCTCTTATCCTGTCTACTAGCA  937

seq1  TCCCCTTCCTCTACAGAGGCAAGCTTTATCTAAGGACTTGGTCAGGCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCCTCTACAGAGGCAAGCTTTATCTAAGGACTTGGTCAGGCTTC  987

seq1  TGTCAAGCACTGCTGCTCAGTAGCTTTTACTGTGGTGTTTGGGACCTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCACTGCTGCTCAGTAGCTTTTACTGTGGTGTTTGGGACCTCCT  1037

seq1  CAGTATACACACAGTTTGTGTATCTAAATTAATCATGTCAGATTGTCAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATACACACAGTTTGTGTATCTAAATTAATCATGTCAGATTGTCAAA  1087

seq1  ACATTAGAATTC  1111
      ||||||||||||
seq2  ACATTAGAATTC  1099