BAC Information

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BAC

Clone NameB6Ng01-123F22
Chromosome13 (Build37)
Map Location 66,004,471 - 66,076,241
singlet/doubletdoublet
Overlap geneEG665897, LOC100041855
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794
Downstream geneEG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123F22.bB6Ng01-123F22.g
ACCDH926550DH926551
length965980
definitionDH926550|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F22, 5' end.DH926551|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,004,471 - 66,005,316)(66,075,262 - 66,076,241)
sequence
gaattctgggtatatgatgatctgcctaactcttctgtttgttctttgtt
ttttgagtaaatgtaattatttttctgtgtgcatgaatatgaatatcatg
cgtgcctcatttttactgttgtcagtacgtggtatcaaaactcctgatct
tgaagtaatgggttgttgttggtccccataaatgctaaatattgaccaca
attatgtggaagaccagcaagagctttccacagctgaactaactttcctg
ccctatgttgcatatttgttatcaatatttatactactagtattttaatt
ggtccatttgtaactctttaaaaattcattcttttttagcaaaattttat
taatgttgcaatttaaactgatgtacttcatgtttcttcaagatggatac
agaactgcagttaatgtataattctttgtaggaacttcagtgcagaacta
tgggttctttctatcatttctgtttccttgggtgctatatgcagggggag
tgagagtcttaatgtgtaacttttgctgtcctggaattggttgcatagat
gatgcaggcctccagcttgaggaaatacaccttcctgtgcctctgattaa
agtcatgagcaaatacctccatcttgtccaatatttttgtagttagtaat
tgttcatacagtttctcagatgtgggcttggtactgttgatctgtatccc
cttgcaatctccctctcaattggcatttcccttgcaaggctatatcctag
gcaaaaggttcaacagcaacagaggtgaacattataattcaatttctttc
taaaaagacatggtgattagaatacacttctgtgtcaggtaataagtagt
gatgttagtatcatgctttgtattgcacatgtttctgggatatttaggat
gcagtgacttttgacgatgtgcatgtgaacttcactaaagaagatggaat
ttgctggatccttcc
gaattctgagacacggagaagagaggtgacctacaggatgctatgggcac
gggtgtgtgtgtgggggggcacggttgggagggacagctccccagaaaat
gacctgctggggacagcatgtcatgacagagactgcctgcagaagaccag
gatggaaacatctcaggggcctgcagaagctccgtgtaaaaatcagttgt
tcagatgtctcccaaccttagccctggacagtgcctgtatagatttcatt
cgtgtgtgactgtttttcagttgcccctgatgtgcataatcattttatta
taccgacgtgagttctgtgaaactagatgttccctgatgtcacaattctt
aaaagattaaaaactgaggcctggggcccagtgcagagcaattctactgg
cccaggtgcttgattgcactctcatcttggagacaatgcaataactgcac
aatggcaattccggattcatgcttgatttgcacagaatgtttgacagaaa
tgattagaaaatgaactacagccaacatcgagactccaggaaaggaaata
actcatgaaatgagttttgtatagcagttgagagtgtttccctggatgaa
caagtatagaatatttaaaaatcttatactcgctgggcatggtggcgcat
gcctttaatcccagcacttgggaggcagaggcaaggcagatttctgagtt
cgaggccagcctggtctacaaagtgagttccaggacagccagggacacac
agagaaaccctggtctcgaaaaaaattaataaataataaataaattaaaa
atcttatactcgtaaaacttaagtcagagcacaggaactctcagaaagtc
actgtgtgcagtgtctgagtggaaagccagtggaaccatctgagtaaggg
tgacttgatcccctggctgatgcttgggcggatttgctgcgtccttatca
ttaaaggcttaacaggaaaatgcaggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66004471_66005316
seq2: B6Ng01-123F22.b_47_891

seq1  GAATTCTGGGTATATGATGATCTGCCTAACTCTTCTGTTTGTTCTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTATATGATGATCTGCCTAACTCTTCTGTTTGTTCTTTGTT  50

seq1  TTTTGAGTAAATGTAATTATTTTTCTGTGTGCATGAATATGAATATCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAAATGTAATTATTTTTCTGTGTGCATGAATATGAATATCATG  100

seq1  CGTGCCTCATTTTTACTGTTGTCAGTACGTGGTATCAAAACTCCTGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTCATTTTTACTGTTGTCAGTACGTGGTATCAAAACTCCTGATCT  150

seq1  TGAAGTAATGGGTTGTTGTTGGTCCCCATAAATGCTAAATATTGACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAATGGGTTGTTGTTGGTCCCCATAAATGCTAAATATTGACCACA  200

seq1  ATTATGTGGAAGACCAGCAAGAGCTTTCCACAGCTGAACTAACTTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGGAAGACCAGCAAGAGCTTTCCACAGCTGAACTAACTTTCCTG  250

seq1  CCCTATGTTGCATATTTGTTATCAATATTTATACTACTAGTATTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGTTGCATATTTGTTATCAATATTTATACTACTAGTATTTTAATT  300

seq1  GGTCCATTTGTAACTCTTTAAAAATTCATTCTTTTTTAGCAAAATTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTTGTAACTCTTTAAAAATTCATTCTTTTTTAGCAAAATTTTAT  350

seq1  TAATGTTGCAATTTAAACTGATGTACTTCATGTTTCTTCAAGATGGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGCAATTTAAACTGATGTACTTCATGTTTCTTCAAGATGGATAC  400

seq1  AGAACTGCAGTTAATGTATAATTCTTTGTAGGAACTTCAGTGCAGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCAGTTAATGTATAATTCTTTGTAGGAACTTCAGTGCAGAACTA  450

seq1  TGGGTTCTTTCTATCATTTCTGTTTCCTTGGGTGCTATATGCAGGGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTTTCTATCATTTCTGTTTCCTTGGGTGCTATATGCAGGGGGAG  500

seq1  TGAGAGTCTTAATGTGTAACTTTTGCTGTCCTGGAATTGGTTGCATAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCTTAATGTGTAACTTTTGCTGTCCTGGAATTGGTTGCATAGAT  550

seq1  GATGCAGGCCTCCAGCTTGAGGAAATACACCTTCCTGTGCCTCTGATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGCCTCCAGCTTGAGGAAATACACCTTCCTGTGCCTCTGATTAA  600

seq1  AGTCATGAGCAAATACCTCCATCTTGTCCAATATTTTTGTAGTTAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGAGCAAATACCTCCATCTTGTCCAATATTTTTGTAGTTAGTAAT  650

seq1  TGTTCATACAGTTTCTCAGATGTGGGCTTGGTACTGTTGATCTGTATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATACAGTTTCTCAGATGTGGGCTTGGTACTGTTGATCTGTATCCC  700

seq1  CTTGCAATCTCCCTCTCAATTGGCATTTCCCTTGCAAGGCTATATCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATCTCCCTCTCAATTGGCATTTCCCTTGCAAGGCTATATCCTAG  750

seq1  GCAAAAGGTTCAACAGCAACAGAGGTGAACATTATAATTCAATTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGTTCAACAGCAACAGAGGTGAACATTATAATTCAATTTCTTTC  800

seq1  TAAAAAGACATGGTGATTAGAATACAACTTCTGTGTCAGGTAATAA  846
      ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAAAAGACATGGTGATTAGAATAC-ACTTCTGTGTCAGGTAATAA  845

seq1: chr13_66075262_66076241
seq2: B6Ng01-123F22.g_69_1048 (reverse)

seq1  TCAGCTTGCATTTTCCTGTTAAG-CTCTAATGATAAAGGACGCAGCAAAT  49
      ||||| ||||||||||||||||| || ||||||| |||||||||||||||
seq2  TCAGCCTGCATTTTCCTGTTAAGCCTTTAATGAT-AAGGACGCAGCAAAT  49

seq1  CTG-CCAAGCATCAGCCAGAGGGAATCAAGTCAACCCTTAACTCAG-TGG  97
      | | |||||||||||||  |||| |||||||| |||||| |||||| |||
seq2  CCGCCCAAGCATCAGCC--AGGGGATCAAGTC-ACCCTT-ACTCAGATGG  95

seq1  TTCCACTGGCTTTCCACCTCAGCACACTGCACACAGTGACTTTCCTGAGA  147
      |||||||||||||||| ||||| |||||||||||||||||||| ||||||
seq2  TTCCACTGGCTTTCCA-CTCAG-ACACTGCACACAGTGACTTT-CTGAGA  142

seq1  GTCCCTGTGCTCTGACTT-AGTTTTACGAGTATAAGATTTTT-ATTTATT  195
      || ||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  GTTCCTGTGCTCTGACTTAAGTTTTACGAGTATAAGATTTTTAATTTATT  192

seq1  TATTTATTTATTAATTTTTTTCGAGA-CAGGGTTTCTCTGTGTGTCCCTG  244
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TA-TTATTTATTAATTTTTTTCGAGACCAGGGTTTCTCTGTGTGTCCCTG  241

seq1  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  291

seq1  CTGCC-TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCA  343
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCA  341

seq1  TGCCCAGCGAGTATAAGA-TTTTAAATATTCTATACTTGTTCATCCA-GG  391
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  TGCCCAGCGAGTATAAGATTTTTAAATATTCTATACTTGTTCATCCAGGG  391

seq1  AAACACTCTCAACTGCTATACAAAACTCATTTCATGAGTTATTTCCTTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCTCAACTGCTATACAAAACTCATTTCATGAGTTATTTCCTTTC  441

seq1  CTGGAGTCTCGATGTTGGCTGTAGTTCATTTTCTAATCATTTCTGTCAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCTCGATGTTGGCTGTAGTTCATTTTCTAATCATTTCTGTCAAA  491

seq1  CATTCTGTGCAAATCAAGCATGAATCCGGAATTGCCATTGTGCAGTTATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTGCAAATCAAGCATGAATCCGGAATTGCCATTGTGCAGTTATT  541

seq1  GCATTGTCTCCAAGATGAGAGTGCAATCAAGCACCTGGGCCAGTAGAATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTCTCCAAGATGAGAGTGCAATCAAGCACCTGGGCCAGTAGAATT  591

seq1  GCTCTGCACTGGGCCCCAGGCCTCAGTTTTTAATCTTTTAAGAATTGTGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCACTGGGCCCCAGGCCTCAGTTTTTAATCTTTTAAGAATTGTGA  641

seq1  CATCAGGGAACATCTAGTTTCACAGAACTCACGTCGGTATAATAAAATGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGAACATCTAGTTTCACAGAACTCACGTCGGTATAATAAAATGA  691

seq1  TTATGCACATCAGGGGCAACTGAAAAACAGTCACACACGAATGAAATCTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACATCAGGGGCAACTGAAAAACAGTCACACACGAATGAAATCTA  741

seq1  TACAGGCACTGTCCAGGGCTAAGGTTGGGAGACATCTGAACAACTGATTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCACTGTCCAGGGCTAAGGTTGGGAGACATCTGAACAACTGATTT  791

seq1  TTACACGGAGCTTCTGCAGGCCCCTGAGATGTTTCCATCCTGGTCTTCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACGGAGCTTCTGCAGGCCCCTGAGATGTTTCCATCCTGGTCTTCTG  841

seq1  CAGGCAGTCTCTGTCATGACATGCTGTCCCCAGCAGGTCATTTTCTGGGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTCTCTGTCATGACATGCTGTCCCCAGCAGGTCATTTTCTGGGG  891

seq1  AGCTGTCCCTCCCAACCGTGCCCCCCCACACACACACCCGTGCCCATAGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCCTCCCAACCGTGCCCCCCCACACACACACCCGTGCCCATAGC  941

seq1  ATCCTGTAGGTCACCTCTCTTCTCCGTGTCTCAGAATTC  980
      |||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTAGGTCACCTCTCTTCTCCGTGTCTCAGAATTC  980