BAC Information

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BAC

Clone NameB6Ng01-124K22
Chromosome13 (Build37)
Map Location 97,820,817 - 97,968,566
singlet/doubletdoublet
Overlap geneEG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb
Upstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik
Downstream geneEnc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124K22.bB6Ng01-124K22.g
ACCDH927526DH927527
length849993
definitionDH927526|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K22, 5' end.DH927527|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,820,817 - 97,821,667)(97,967,563 - 97,968,566)
sequence
gaattcattctgtagaccaggcgggcctcgaactcagaaatccgcctgcc
tctctgggattaaaggcgtgcgccaccatgcccgactatgcgggtatttt
aaaaaacaactttcaatgaggtccaaatagttgctttggcagagtggggg
acatattttcattaagatctttcagtcatgttttgagcaccgactatctg
ctaagtatacatccccagcccacaagctcccctctatcagggccagctct
ctcccaaagcaatgcaggcaggtgtgtgagacccctctcttgcttcccac
aggactctgctctgccctgctctgcccatcactgcttcctaacttccact
gtcagccaatctctccctctctgcaggcgtcttccctttgcctgatcacc
acgtgcaaggactcccaccttggcacactgaccggccaactttggctcct
ttccctggattctgagctcatcccttggcgcagagcatcactggggtgct
atccgctactaatgagccctctttaggcttggttccaggacctcgcatgt
gcacttgttggcttcctttgcatagcacagcttgggcacacagtgccagc
cctggtgcagaatagatggttaggggtcagaagtacaaatacagaattca
gtaacctgaatacaaaggagatagtcaaaaaggtgatgccaaagggaggc
aggaccattattgatacagggaaggaaatggtgatgtatttggtgtcaca
cgcgtgaagtttatagaaatagcagtaaagtactgtgggaagattaatca
cgatgcataaacatttcatataaggagaaaggatagctgggcagtggtg
gaattctgactcgggaggttttatcaatcagagtccaccaccgtcagatt
tagtgacaaaaacactacctgaagagtggaggaagagacaggtcttgcct
gtcagtgggctgcacaaacaagttcctcaggcgtgacaggcgtgagccac
accccagcatcccggctagagcgcgaccgcctctgcaccgagcctgcccc
caatttccgggccaatcccctctcggaggcggagcccgggcggggagctc
ggtcatctgacttggtgacccgggcacggatgctttcttcccagcgaccc
agactggaaggttggtccaaagactgcctagccagactcgcggagcagtc
atgccgcagtccccgcgtagcgcccccgggctgctgctgctgcaggcgct
ggtgtcgctagtgtcgctggccctagtggccccggcccgactgcaacctg
cgctatggcccttcccgcgctcggtgcagatgttcccgcggctgttgtac
atctccgcggaggacttcagcatcgaccacagtcccaattccacagcggg
cccttcctgctcgctgctacaggaggcgtttcggcggtgagcagccccac
ccagcggggaggggaccttgggcacagagaaggatcgccgggctacttgg
gtctcacaggactggaagacagcatgactagccagtctaacttaggtcca
actttgcagactgaagcccaagacttgacctgttcatgcttcttctttcg
cgccctaggtgctcagggaccctacttaggatgggttccgaataacaacg
ccgggcgtggtggcgcacgccttaatcccagcactcgggaggcagagcag
gtggatttctgagttccaggccacctggtctacagagtgagtccaagaca
gccgaggccatactgagaatccctgtctgtaaaaccaaaccaaacgaatt
accatgtaaccgtactctgttggagtcagtttgttgggcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_97820817_97821667
seq2: B6Ng01-124K22.b_49_897

seq1  GAATTCATTCTGTAGACCAGGCGGGCCTCGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTAGACCAGGCGGGCCTCGAACTCAGAAATCCGCCTGCC  50

seq1  TCTCTGGGATTAAAGGCGTGCGCCACCATGCCCGACTATGCGGGTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGATTAAAGGCGTGCGCCACCATGCCCGACTATGCGGGTATTTT  100

seq1  AAAAAACAACTTTCAATGAGGTCCAAATAGTTGCTTTGGCAGAGTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAACTTTCAATGAGGTCCAAATAGTTGCTTTGGCAGAGTGGGGG  150

seq1  ACATATTTTCATTAAGATCTTTCAGTCATGTTTTGAGCACCGACTATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTCATTAAGATCTTTCAGTCATGTTTTGAGCACCGACTATCTG  200

seq1  CTAAGTATACATCCCCAGCCCACAAGCTCCCCTCTATCAGGGCCAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTATACATCCCCAGCCCACAAGCTCCCCTCTATCAGGGCCAGCTCT  250

seq1  CTCCCAAAGCAATGCAGGCAGGTGTGTGAGACCCCTCTCTTGCTTCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAAGCAATGCAGGCAGGTGTGTGAGACCCCTCTCTTGCTTCCCAC  300

seq1  AGGACTCTGCTCTGCCCTGCTCTGCCCATCACTGCTTCCTAACTTCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTGCTCTGCCCTGCTCTGCCCATCACTGCTTCCTAACTTCCACT  350

seq1  GTCAGCCAATCTCTCCCTCTCTGCAGGCGTCTTCCCTTTGCCTGATCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCAATCTCTCCCTCTCTGCAGGCGTCTTCCCTTTGCCTGATCACC  400

seq1  ACGTGCAAGGACTCCCACCTTGGCACACTGACCGGCCAACTTTGGCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCAAGGACTCCCACCTTGGCACACTGACCGGCCAACTTTGGCTCCT  450

seq1  TTCCCTGGATTCTGAGCTCATCCCTTGGCGCAGAGCATCACTGGGGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGATTCTGAGCTCATCCCTTGGCGCAGAGCATCACTGGGGTGCT  500

seq1  ATCCGCTACTAATGAGCCCTCTTTAGGCTTGGTTCCAGGACCTCGCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCTACTAATGAGCCCTCTTTAGGCTTGGTTCCAGGACCTCGCATGT  550

seq1  GCACTTGTTGGCTTCCTTTGCATAGCACAGCTTGGGCACACAGTGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGTTGGCTTCCTTTGCATAGCACAGCTTGGGCACACAGTGCCAGC  600

seq1  CCTGGTGCAGAATAGATGGTTAGGGGTCAGAAGTACAAATACAGAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCAGAATAGATGGTTAGGGGTCAGAAGTACAAATACAGAATTCA  650

seq1  GTAACCTGAATACAAAGGAGATAGTCAAAAAGGTGATGCCAAAGGGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGAATACAAAGGAGATAGTCAAAAAGGTGATGCCAAAGGGAGGC  700

seq1  AGGACCATTATTGATACAGGGAAGGAAATGGTGATGTATTTGGTGTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATTATTGATACAGGGAAGGAAATGGTGATGTATTTGGTGTCACA  750

seq1  CGCGTGAAGTTTATAGAAATAGCAGTAAAGTACTGTGGGAAGATTAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTGAAGTTTATAGAAATAGCAGTAAAGTACTGTGGGAAGATTAATCA  800

seq1  CGATGCATAAACATTTCAATATAAGGAGAAAGGATTAGCTGGGCAGTGGT  850
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  CGATGCATAAACATTTC-ATATAAGGAGAAAGGA-TAGCTGGGCAGTGGT  848

seq1  G  851
      |
seq2  G  849

seq1: chr13_97967563_97968566
seq2: B6Ng01-124K22.g_69_1061 (reverse)

seq1  TGAGGCCCAACAAACTGACTCCAGCAGAGTCACGGGTTCCATTGTTATTC  50
      ||||||||||||||||||||||| |||||| || |||| ||| || ||||
seq2  TGAGGCCCAACAAACTGACTCCAACAGAGT-AC-GGTTACATGGTAATTC  48

seq1  TGTTTTGTTTTGGTTTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  100
       |||| ||||  | ||||  |||||||| ||||| |||| |||  |||||
seq2  -GTTTGGTTT--GGTTTTACAGACAGGGATTCTCAGTATGGCCTCGGCTG  95

seq1  TCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCCAC  150
      || ||| ||||||||||||||||||| |||||| ||||||||||||||||
seq2  TCTTGG-ACTCACTCTGTAGACCAGG-TGGCCTGGAACTCAGAAATCCAC  143

seq1  CTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCC  200
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTG-CTCTGCCTCCCGAGTGCTGGGATT-AAGGCGTGCGCCACCACGCCC  191

seq1  GGCCGTTGTTATTCGGAACCCATCCTAAGTAGGGTCCCTGAGCACCTAGG  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-CGTTGTTATTCGGAACCCATCCTAAGTAGGGTCCCTGAGCACCTAGG  240

seq1  GCGCGAAAGAAGAAGCATGAACAGGTCAAGTCTTGGGCTTCAGTCTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGAAAGAAGAAGCATGAACAGGTCAAGTCTTGGGCTTCAGTCTGCAA  290

seq1  AGTTTGGACCTAAGTTAGACTGGCTAGTCATGCTGTCTTCCAGTCCTGTG  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TTGGACCTAAGTTAGACTGGCTAGTCATGCTGTCTTCCAGTCCTGTG  339

seq1  AGACCCAAGTAGCCCGGCGATCCTTCTCTGTGCCCAAGGTCCCCTCCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAAGTAGCCCGGCGATCCTTCTCTGTGCCCAAGGTCCCCTCCCCG  389

seq1  CTGGGTGGGGCTGCTCACCGCCGAAACGCCTCCTGTAGCAGCGAGCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGGGCTGCTCACCGCCGAAACGCCTCCTGTAGCAGCGAGCAGGA  439

seq1  AGGGCCCGCTGTGGAATTGGGACTGTGGTCGATGCTGAAGTCCTCCGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCGCTGTGGAATTGGGACTGTGGTCGATGCTGAAGTCCTCCGCGG  489

seq1  AGATGTACAACAGCCGCGGGAACATCTGCACCGAGCGCGGGAAGGGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTACAACAGCCGCGGGAACATCTGCACCGAGCGCGGGAAGGGCCAT  539

seq1  AGCGCAGGTTGCAGTCGGGCCGGGGCCACTAGGGCCAGCGACACTAGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGGTTGCAGTCGGGCCGGGGCCACTAGGGCCAGCGACACTAGCGA  589

seq1  CACCAGCGCCTGCAGCAGCAGCAGCCCGGGGGCGCTACGCGGGGACTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCGCCTGCAGCAGCAGCAGCCCGGGGGCGCTACGCGGGGACTGCG  639

seq1  GCATGACTGCTCCGCGAGTCTGGCTAGGCAGTCTTTGGACCAACCTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACTGCTCCGCGAGTCTGGCTAGGCAGTCTTTGGACCAACCTTCCA  689

seq1  GTCTGGGTCGCTGGGAAGAAAGCATCCGTGCCCGGGTCACCAAGTCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGTCGCTGGGAAGAAAGCATCCGTGCCCGGGTCACCAAGTCAGAT  739

seq1  GACCGAGCTCCCCGCCCGGGCTCCGCCTCCGAGAGGGGATTGGCCCGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAGCTCCCCGCCCGGGCTCCGCCTCCGAGAGGGGATTGGCCCGGAA  789

seq1  ATTGGGGGCAGGCTCGGTGCAGAGGCGGTCGCGCTCTAGCCGGGATGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGCAGGCTCGGTGCAGAGGCGGTCGCGCTCTAGCCGGGATGCTG  839

seq1  GGGTGTGGCTCACGCCTGTCACGCCTGAGGAACTTGTTTGTGCAGCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGCTCACGCCTGTCACGCCTGAGGAACTTGTTTGTGCAGCCCAC  889

seq1  TGACAGGCAAGACCTGTCTCTTCCTCCACTCTTCAGGTAGTGTTTTTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGCAAGACCTGTCTCTTCCTCCACTCTTCAGGTAGTGTTTTTGTC  939

seq1  ACTAAATCTGACGGTGGTGGACTCTGATTGATAAAACCTCCCGAGTCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATCTGACGGTGGTGGACTCTGATTGATAAAACCTCCCGAGTCAGA  989

seq1  ATTC  1004
      ||||
seq2  ATTC  993