BAC Information

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BAC

Clone NameB6Ng01-125C16
Chromosome13 (Build37)
Map Location 36,407,905 - 36,409,097
singlet/doubletsinglet
Overlap geneFars2
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125C16.bB6Ng01-125C16.g
ACCDH927880DH927881
length1,1711,219
definitionDH927880|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C16, 5' end.DH927881|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctaagcccagaatttccatatttaaaattcctactttaacaca
ttcacagcaaatttccatatatgtttagagtttcagtctctcttgacaag
gctctcttgacaactgataaaactgtgctatccccagttactgttccagc
atcggactcagctacccacatctgagaggagcaagatgcatgttactctg
gcgtgaatttccttccactaaacacttcacttggttgagaagaatctcat
tgtaagccatgcgatgtgactgggtggttagcagattacttgtgcttcgt
tatgagtttggctgaatagtttgtgaatctgcaagacacagaattacttt
aaagtcacagtacacgtggagcattcctagattccctttatcttttatta
tttttcctgtcccaatttgcactttaatttcctgttttctacgatgtatt
tgatgtttttctataatcactcttcaacctcgtgtgttccacgagagcat
gcaggtgagcacatgaggggaagcagcagtgcgttaccctgactactaaa
catgctttaaagtgttattttatgtccatggctgcatgtatgtacgtatg
tgtaccatatgtatttctggtacctgtggaggttagaagagcctgtcaga
ctccctggagcatgggaggttgtgagccatgtgggaagtgagatccagac
ttgggccctctgtaagagtggcaagtgctcctaaccactgagtcatctct
ccagacagtaaacatttttttaatctaaaaaaaaaattagttttgaatat
taagaatgtgtaatagcacattacacattcttataaggttgccatactca
gaaaccccagcagatctctgtcaagtacctaagtactgactaagacaaca
acttacccaaggacttagtgttcattttctgggcctgagggctgcaaaag
agactagtgacacaactgggtaataaacagtagttaccatgacaatctca
gcccactgcctccctagatgcagaagagttctggaacagaagcctaaagg
aaagccaggaaggggtggggagcagcaccagaaacaagatgcaagaaact
acgtgcactttatcataattaacgctaaatttcttcgctatccaagtcta
tctcaacccagctaagtgaac
gaattcaatgcccatacctaaacatgaaaaaagcaatctacagcaaacca
gtaggcaacatcaaagtaaatggagagaaactggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctcctaccttttcaacatagt
acttgaagtattagccagagcaattcgacaacaaaaggagatcaaggtga
tacaaattggaaaagaggaagtcaaaatcactttttgcagatgatatgat
agtatatataagtgaccctaaaaattctaccagagaactcctaaacctga
taaacagcttcggtgaagtagctggatataaaataaactcaaacaagtca
atggcctttctctatacaaagaataaacaggctgagaaagaaattaggga
aacaacacccttcacaatagtcacaaataatataaaataccttggcgtga
ctctaactaaggaggtgaaagatctgtatgataaaaacttcaaatctctg
aagaaagaaattaaagaagatctcagaagatggaaggatctcccacgctc
atggattggcaggataaacattgtaaaaatggctatcttgccaaaagcaa
tctacagattcaatgcaatccccatcaaaattccaactcaattcttctac
gaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctag
gattgcaaaaagtcttctcaaggataaaagaacctcttggtggaatcacc
atgcctgacctaaagctttactacagagcaattgtgataaaaactgcatg
gtactggtatagagacagacaagtagaccaatggaatagaattgaagacc
cagaaatgaacccacacacctatggtcacttgatcctcgacaagggagct
aaaccatccagtggaagaaaaacagtattttcaacaattggtgctggcac
aactggttgtatcatgtagaagaatgcgatcaatccatacttatctctgt
actaaggtgaaatctagtggatcagacttcacataaaatcgagaacactg
aaacttaatagaaggagaagtgggaaggcttgagatttgggcacagggga
aaattctgaacgaaagcaatgccttgtgctgtagatcgaatgacaatgac
ctattgaactctgttcgcagcagacgtcatagacaaagactcacattggg
agagaacttactaactcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36407905_36409097
seq2: B6Ng01-125C16.b_49_1219 (reverse)

seq1  GTTCACTTAGCCTTGGGTTGAAGAATGACTTGGGATGAGCGAAGGAACAT  50
      |||||||||||  ||||||| |||  ||||| |||| |||||||  | ||
seq2  GTTCACTTAGC--TGGGTTG-AGATAGACTT-GGAT-AGCGAAG--AAAT  43

seq1  CTAAGGCGTTCATTTATGATTAAAGTGCAACCGTAGTGTTCTTGCATTCT  100
       ||  ||||| | |||||| |||||||||  |||||| |||||||| |||
seq2  TTA--GCGTT-AATTATGA-TAAAGTGCA--CGTAGT-TTCTTGCA-TCT  85

seq1  TGTTCTTGGTGCTGCTTCCCCCAACCCCTTCCTGGCTTTTCCTCTAGGCC  150
      ||||  ||||||||||   ||| ||||||||||||| |||||| |||| |
seq2  TGTTTCTGGTGCTGCT---CCCCACCCCTTCCTGGC-TTTCCTTTAGG-C  130

seq1  TTCTGTTCCAGAACTTCTTCTGCATCTAGGGAGGCAGTGGGCTGAGATTG  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCCAGAAC-TCTTCTGCATCTAGGGAGGCAGTGGGCTGAGATTG  179

seq1  TCATGGTAACTACTGTTTATTACCCAGTTGTGTTCACTAGTCTCTTTTGC  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATGGTAACTACTGTTTATTACCCAGTTGTG-TCACTAGTCTCTTTTGC  228

seq1  AGCCCTCAGGCCCAGAAAATGAACACTAAGTCCTTGGGTAAGTTGTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCAGGCCCAGAAAATGAACACTAAGTCCTTGGGTAAGTTGTTGTC  278

seq1  TTAGTCAGTACTTAGGTACTTGACAGAGATCTGCTGGGGTTTCTGAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGTACTTAGGTACTTGACAGAGATCTGCTGGGGTTTCTGAGTAT  328

seq1  GGCAACCTTATAAGAATGTGTAATGTGCTATTACACATTCTTAATATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCTTATAAGAATGTGTAATGTGCTATTACACATTCTTAATATTCA  378

seq1  AAACTAATTTTTTTTTTAGATTAAAAAAATGTTTACTGTCTGGAGAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATTTTTTTTTTAGATTAAAAAAATGTTTACTGTCTGGAGAGATG  428

seq1  ACTCAGTGGTTAGGAGCACTTGCCACTCTTACAGAGGGCCCAAGTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGGTTAGGAGCACTTGCCACTCTTACAGAGGGCCCAAGTCTGGA  478

seq1  TCTCACTTCCCACATGGCTCACAACCTCCCATGCTCCAGGGAGTCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTCCCACATGGCTCACAACCTCCCATGCTCCAGGGAGTCTGACA  528

seq1  GGCTCTTCTAACCTCCACAGGTACCAGAAATACATATGGTACACATACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCTAACCTCCACAGGTACCAGAAATACATATGGTACACATACGT  578

seq1  ACATACATGCAGCCATGGACATAAAATAACACTTTAAAGCATGTTTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCAGCCATGGACATAAAATAACACTTTAAAGCATGTTTAGTA  628

seq1  GTCAGGGTAACGCACTGCTGCTTCCCCTCATGTGCTCACCTGCATGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTAACGCACTGCTGCTTCCCCTCATGTGCTCACCTGCATGCTCT  678

seq1  CGTGGAACACACGAGGTTGAAGAGTGATTATAGAAAAACATCAAATACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAACACACGAGGTTGAAGAGTGATTATAGAAAAACATCAAATACAT  728

seq1  CGTAGAAAACAGGAAATTAAAGTGCAAATTGGGACAGGAAAAATAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAAAACAGGAAATTAAAGTGCAAATTGGGACAGGAAAAATAATAAA  778

seq1  AGATAAAGGGAATCTAGGAATGCTCCACGTGTACTGTGACTTTAAAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGGGAATCTAGGAATGCTCCACGTGTACTGTGACTTTAAAGTAA  828

seq1  TTCTGTGTCTTGCAGATTCACAAACTATTCAGCCAAACTCATAACGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCTTGCAGATTCACAAACTATTCAGCCAAACTCATAACGAAGC  878

seq1  ACAAGTAATCTGCTAACCACCCAGTCACATCGCATGGCTTACAATGAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAATCTGCTAACCACCCAGTCACATCGCATGGCTTACAATGAGAT  928

seq1  TCTTCTCAACCAAGTGAAGTGTTTAGTGGAAGGAAATTCACGCCAGAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAACCAAGTGAAGTGTTTAGTGGAAGGAAATTCACGCCAGAGTA  978

seq1  ACATGCATCTTGCTCCTCTCAGATGTGGGTAGCTGAGTCCGATGCTGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATCTTGCTCCTCTCAGATGTGGGTAGCTGAGTCCGATGCTGGAA  1028

seq1  CAGTAACTGGGGATAGCACAGTTTTATCAGTTGTCAAGAGAGCCTTGTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTGGGGATAGCACAGTTTTATCAGTTGTCAAGAGAGCCTTGTCA  1078

seq1  AGAGAGACTGAAACTCTAAACATATATGGAAATTTGCTGTGAATGTGTTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACTGAAACTCTAAACATATATGGAAATTTGCTGTGAATGTGTTA  1128

seq1  AAGTAGGAATTTTAAATATGGAAATTCTGGGCTTAGAGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGAATTTTAAATATGGAAATTCTGGGCTTAGAGAATTC  1171