BAC Information

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BAC

Clone NameB6Ng01-125F21
Chromosome13 (Build37)
Map Location 24,301,175 - 24,301,984
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneV1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125F21.bB6Ng01-125F21.g
ACCDH928023DH928024
length1,113811
definitionDH928023|Mus musculus domesticus DNA, BAC clone: B6Ng01-125F21, 5' end.DH928024|Mus musculus domesticus DNA, BAC clone: B6Ng01-125F21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcccttcccaatctgttggtggact
ttttgtcttattgacggtgtcttttgccttacagaagctttgtaatttta
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggttttttcccca
ctttctcctctgtaagtttcactgtctctggttttatgtggagttccttg
atccacttagatttgaccttagtacaaggagataggaatggatcaatttg
caatcttctacatgataaccgccagttgtgtcagcaccatttgttgaaaa
tgctgtcttttttccactggatggtttttgatcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtcgctataccagtaccacacagtttttaccacaattg
ctctgtagtacagctttaggtcagggatggtgattccaccagaggtcctt
ttatctttaaggagagtttttgctatcctaggttttttgttattccagat
gaatttgcagattgcccttttctaatttgtttaagaattgagttggaatt
ttgatggggattgcattgaatcctgtagattgcttttggcaaggttagcc
atttttactatattgatcctgccaatccatgagcatggggagatctttcc
atcttctgagatcttcttttaatttttttcttcagagacttgaagttcta
tcatacagatctttcacttccttaattagagtcatgccaaggtatttaat
attattgtgactatgaaaagggtgttgttctcctaatttctctctcagcc
tgtttatccttgtgttaaagaaaggtcattggactgggtttagattattt
tatatccagcctacttaactgggaggctggttatcaaggttaaggaagtt
cgcctggagaaat
gaattcctgggctgaagaagcctgataggctgcagaccccttgagataag
aacatggatgtcaggatgtgatcaggactagggaactgtcttagaggaat
acgggggtaagagggaaagataggtgctaggaaaggtgcctttgcatgcg
gctccagactgagtcctgggtaagacggagagaacatggtcagttaacgc
ctagcgaagttgacccccagcaaccaagactccttagtcgtccctccccc
cccccccgatactcattaaaattcacctctactctgaagcccacttagta
accttgcatggtccacattctgctggagcaaactcccttgccagctgccc
cacagtaacaggggaaggagaaaaggtccactaaggaaatctggtccttg
tactaagtgggaaaatccttcgtggaagggacacaagaagcagacaagaa
tattacaaagacatgggtcacccaacccagccataaatggattccacaga
caagatggcccaggaatgggaacacaaaattctgctgagttgtgagtatt
aaagatgttaaaggagcaatagctcagttggtaacgtgcctgctgtgcaa
atatgaggatcttggttctcatacccacattcccatgtcagacatagcgg
tgtaatggtaatcccagctctgggaagttgggggtgggggttctctgaag
ccagcctatccttggcaagtgagaggagctgtatccatgaacaaggaagc
cagctgctgaagaaggacactggaggttgtcctcttgattccacatgggc
atgcaccccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24301175_24301984
seq2: B6Ng01-125F21.g_69_879

seq1  GAATTCCTGGGCTGAAGAAGCCTGATAGGCTGCAGACCCCTTGAGATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGCTGAAGAAGCCTGATAGGCTGCAGACCCCTTGAGATAAG  50

seq1  AACATGGATGTCAGGATGTGATCAGGACTAGGGAACTGTCTTAGAGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGATGTCAGGATGTGATCAGGACTAGGGAACTGTCTTAGAGGAAT  100

seq1  ACGGGGGTAAGAGGGAAAGATAGGTGCTAGGAAAGGTGCCTTTGCATGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGGTAAGAGGGAAAGATAGGTGCTAGGAAAGGTGCCTTTGCATGCG  150

seq1  GCTCCAGACTGAGTCCTGGGTAAGACGGAGAGAACATGGTCAGTTAACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGACTGAGTCCTGGGTAAGACGGAGAGAACATGGTCAGTTAACGC  200

seq1  CTAGCGAAGTTGACCCCCAGCAACCAAGACTCCTTAGTCGTCCCTCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGAAGTTGACCCCCAGCAACCAAGACTCCTTAGTCGTCCCTCCCCC  250

seq1  CCCCCCCGATACTCATTAAAATTCACCTCTACTCTGAAGCCCACTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCGATACTCATTAAAATTCACCTCTACTCTGAAGCCCACTTAGTA  300

seq1  ACCTTGCATGGTCCACATTCTGCTGGAGCAAACTCCCTTGCCAGCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCATGGTCCACATTCTGCTGGAGCAAACTCCCTTGCCAGCTGCCC  350

seq1  CACAGTAACAGGGGAAGGAGAAAAGGTCCACTAAGGAAATCTGGTCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAACAGGGGAAGGAGAAAAGGTCCACTAAGGAAATCTGGTCCTTG  400

seq1  TACTAAGTGGGAAAATCCTTCGTGGAAGGGACACAAGAAGCAGACAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGTGGGAAAATCCTTCGTGGAAGGGACACAAGAAGCAGACAAGAA  450

seq1  TATTACAAAGACATGGGTCACCCAACCCAGCCATAAATGGATTCCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAGACATGGGTCACCCAACCCAGCCATAAATGGATTCCACAGA  500

seq1  CAAGATGGCCCAGGAATGGGAACACAAAATTCTGCTGAGTTGTGAGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCCCAGGAATGGGAACACAAAATTCTGCTGAGTTGTGAGTATT  550

seq1  AAAGATGTTAAAGGAGCAATAGCTCAGTTGGTAACGTGCCTGCTGTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTAAAGGAGCAATAGCTCAGTTGGTAACGTGCCTGCTGTGCAA  600

seq1  ATATGAGGATCTTGGTTCTCATACCCACATTCCCATGTCAGACATAGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGGATCTTGGTTCTCATACCCACATTCCCATGTCAGACATAGCGG  650

seq1  TGTAATGGTAATCCCAGCTCTGGGAAGTTGGGGGTGGGGGTTCTCTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGTAATCCCAGCTCTGGGAAGTTGGGGGTGGGGGTTCTCTGAAG  700

seq1  CCAGCCTATCCTTGGCAAGTGAGAGGAGCTGTAT-CAGGAACAAGGTAGC  749
      |||||||||||||||||||||||||||||||||| || |||||||| |||
seq2  CCAGCCTATCCTTGGCAAGTGAGAGGAGCTGTATCCATGAACAAGGAAGC  750

seq1  CAGCTGCTGAGGAAGGACATCTGAGGTTGTCCTCTAGATTCCACATGGGC  799
      |||||||||| ||||||||   ||||||||||||| ||||||||||||||
seq2  CAGCTGCTGAAGAAGGACACTGGAGGTTGTCCTCTTGATTCCACATGGGC  800

seq1  ATGCACCCATA  810
      |||||||| ||
seq2  ATGCACCCCTA  811