BAC Information

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BAC

Clone NameB6Ng01-125O22
Chromosome13 (Build37)
Map Location 36,684,553 - 36,797,988
singlet/doubletdoublet
Overlap genenone
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758
Downstream geneNrn1, F13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125O22.bB6Ng01-125O22.g
ACCDH928430DH928431
length1,093301
definitionDH928430|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O22, 5' end.DH928431|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,684,553 - 36,685,645)(36,797,688 - 36,797,988)
sequence
gaattcttgttttgagtgaattcactctgtttaatctaatagttggatta
taggaatgtatatgaggcagggaagaacaggaaaaagcttgccttaggct
accctagaattgggctcttgagctttgagaagataaacatctcccagaca
ctaaacttactgaagactgttggtactgacggagacagtctgtactgtgt
taggaagaaggacaatgcttgggagaatactccagtcagaaccccactcc
cctcctggtgggatgggcatagtggtgaggctaccatggaaacagcatca
aggcccttacaaaagtaaagagagaagcacagcatggtccagcaatctac
tctggagtatacaccctaaggaactgacatcactgtgtcgaagcctctgt
gctgtctccaacctcatagtaacactcttgacaacagctcagattcagaa
agaaacagcagaagaatgggttaagaaaatgtgttatgcttttcacagat
agctcatttgtaaaatgattccatttcattcaacctttgaaaaggaggaa
accaggggctggaaagatgccccagtggttaagagcacctacttgctctt
gcagagaatctacatttggtacccagcatcaatattgggttggcgaggct
cacaaccacctgtaactccagttccagggggacttcacagaagtgaacat
tgggacgagcaggcacacatacatgcacataaataagtaatgattaaaat
gaataaaaaataaaaaaggaagaaatagcacattgagacaagatggatga
acccgagcagagtaggctgagtgagaaaagctggacaaagaagaacaagt
atggtgagcactgcaagatcccaggttcacggggttctgagaacagccac
agaagagacagtggaatggtggtttctaggggctgggggaaggtagcaga
agctgttgtgcagttaatgtgagcttgcagttatgctggaagactgggta
ataaacatctattcccacagcattgagctcataagtcatgctgtatatta
tcacactttaacatggtgtaataaaagatcatttcacagtaat
acccttgcaataacccaggaagagaagatggagagatggttcagcagtta
agagcactcgttgctcttattgaggagctcatgcttggttcccagcaccc
acacagtggctcagaaccatctgtgcctgtggatctgggagatgtgacga
cttcttctgacctagaaggcaccaagcacaaatatggtgcacatatatgc
atgtagtcacagcactcataggcataaaataaaataatatgttttgaaaa
gaagaaagaagaaggagaagagagaggaaggaggaggaggaggagggagg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36684553_36685645
seq2: B6Ng01-125O22.b_48_1140

seq1  GAATTCTTGTTTTGAGTGAATTCACTCTGTTTAATCTAATAGTTGGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTTGAGTGAATTCACTCTGTTTAATCTAATAGTTGGATTA  50

seq1  TAGGAATGTATATGAGGCAGGGAAGAACAGGAAAAAGCTTGCCTTAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGTATATGAGGCAGGGAAGAACAGGAAAAAGCTTGCCTTAGGCT  100

seq1  ACCCTAGAATTGGGCTCTTGAGCTTTGAGAAGATAAACATCTCCCAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGAATTGGGCTCTTGAGCTTTGAGAAGATAAACATCTCCCAGACA  150

seq1  CTAAACTTACTGAAGACTGTTGGTACTGACGGAGACAGTCTGTACTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTACTGAAGACTGTTGGTACTGACGGAGACAGTCTGTACTGTGT  200

seq1  TAGGAAGAAGGACAATGCTTGGGAGAATACTCCAGTCAGAACCCCACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAAGGACAATGCTTGGGAGAATACTCCAGTCAGAACCCCACTCC  250

seq1  CCTCCTGGTGGGATGGGCATAGTGGTGAGGCTACCATGGAAACAGCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGTGGGATGGGCATAGTGGTGAGGCTACCATGGAAACAGCATCA  300

seq1  AGGCCCTTACAAAAGTAAAGAGAGAAGCACAGCATGGTCCAGCAATCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTACAAAAGTAAAGAGAGAAGCACAGCATGGTCCAGCAATCTAC  350

seq1  TCTGGAGTATACACCCTAAGGAACTGACATCACTGTGTCGAAGCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTATACACCCTAAGGAACTGACATCACTGTGTCGAAGCCTCTGT  400

seq1  GCTGTCTCCAACCTCATAGTAACACTCTTGACAACAGCTCAGATTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCAACCTCATAGTAACACTCTTGACAACAGCTCAGATTCAGAA  450

seq1  AGAAACAGCAGAAGAATGGGTTAAGAAAATGTGTTATGCTTTTCACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCAGAAGAATGGGTTAAGAAAATGTGTTATGCTTTTCACAGAT  500

seq1  AGCTCATTTGTAAAATGATTCCATTTCATTCAACCTTTGAAAAGGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTTGTAAAATGATTCCATTTCATTCAACCTTTGAAAAGGAGGAA  550

seq1  ACCAGGGGCTGGAAAGATGCCCCAGTGGTTAAGAGCACCTACTTGCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGCTGGAAAGATGCCCCAGTGGTTAAGAGCACCTACTTGCTCTT  600

seq1  GCAGAGAATCTACATTTGGTACCCAGCATCAATATTGGGTTGGCGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAATCTACATTTGGTACCCAGCATCAATATTGGGTTGGCGAGGCT  650

seq1  CACAACCACCTGTAACTCCAGTTCCAGGGGGACTTCACAGAAGTGAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCACCTGTAACTCCAGTTCCAGGGGGACTTCACAGAAGTGAACAT  700

seq1  TGGGACGAGCAGGCACACATACATGCACATAAATAAGTAATGATTAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACGAGCAGGCACACATACATGCACATAAATAAGTAATGATTAAAAT  750

seq1  GAATAAAAAATAAAAAAGGAAGAAATAGCACATTGAGACAAGATGGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAAATAAAAAAGGAAGAAATAGCACATTGAGACAAGATGGATGA  800

seq1  ACCCGAGCAGAGTAGGCTGAGTGAGAAAAGCTGGACAAAGAAGAACAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGCAGAGTAGGCTGAGTGAGAAAAGCTGGACAAAGAAGAACAAGT  850

seq1  ATGGTGAGCACTGCAAGATCCCAGGTTCACGGGGTTCTGAGAACAGCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGCACTGCAAGATCCCAGGTTCACGGGGTTCTGAGAACAGCCAC  900

seq1  AGAAGAGACAGTGGAATGGTGGTTTCTAGGGGCTGGGGGAAGGTAGCAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAAGAGACAGTGGAATGGTGGTTTCTAGGGGCTGGGGGAAGGTAGCA-G  949

seq1  AAGCTGTTGTGCAGTTAATGTGAGCTTGCAGTTATGCTGGGAAGACT-GG  999
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  AAGCTGTTGTGCAGTTAATGTGAGCTTGCAGTTATGCT-GGAAGACTGGG  998

seq1  TAATAAACATCTA-TCCCACAGCATTGAGCCTGGAATAAGTCATGCTGTA  1048
      ||||||||||||| ||||||||||||||||     |||||||||||||||
seq2  TAATAAACATCTATTCCCACAGCATTGAGC---TCATAAGTCATGCTGTA  1045

seq1  TA-TATCACACTTT-ACAT-GTGTAAT-AAAGATCAATTTCACAGTAAT  1093
      || ||||||||||| |||| ||||||| ||||||| |||||||||||||
seq2  TATTATCACACTTTAACATGGTGTAATAAAAGATC-ATTTCACAGTAAT  1093

seq1: chr13_36797688_36797988
seq2: B6Ng01-125O22.g_73_373 (reverse)

seq1  TCCTCCCTCCTCCTCCTCCTCCTTCCTCTCTCTTCTCCTTCTTCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCCTCCTCCTCCTCCTTCCTCTCTCTTCTCCTTCTTCTTTCTT  50

seq1  CTTTTCAAAACATATTATTTTATTTTATGCCTATGAGTGCTGTGACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAACATATTATTTTATTTTATGCCTATGAGTGCTGTGACTACA  100

seq1  TGCATATATGTGCACCATATTTGTGCTTGGTGCCTTCTAGGTCAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATGTGCACCATATTTGTGCTTGGTGCCTTCTAGGTCAGAAGAA  150

seq1  GTCGTCACATCTCCCAGATCCACAGGCACAGATGGTTCTGAGCCACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCACATCTCCCAGATCCACAGGCACAGATGGTTCTGAGCCACTGTG  200

seq1  TGGGTGCTGGGAACCAAGCATGAGCTCCTCAATAAGAGCAACGAGTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGGGAACCAAGCATGAGCTCCTCAATAAGAGCAACGAGTGCTC  250

seq1  TTAACTGCTGAACCATCTCTCCATCTTCTCTTCCTGGGTTATTGCAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCTGAACCATCTCTCCATCTTCTCTTCCTGGGTTATTGCAAGGG  300

seq1  T  301
      |
seq2  T  301