BAC Information

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BAC

Clone NameB6Ng01-126K22
Chromosome13 (Build37)
Map Location 105,979,012 - 106,083,379
singlet/doubletdoublet
Overlap geneRnf180
Upstream geneTrim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656
Downstream geneHtr1a, EG668025, Olfr717-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126K22.bB6Ng01-126K22.g
ACCDH928986DH928987
length1,1641,044
definitionDH928986|Mus musculus domesticus DNA, BAC clone: B6Ng01-126K22, 5' end.DH928987|Mus musculus domesticus DNA, BAC clone: B6Ng01-126K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,979,012 - 105,980,184)(106,082,309 - 106,083,379)
sequence
gaattctttcatgcacaggggagtaaggaacaatggaggatggtgctgag
gcatcatgagtagacagtaagggttgcttagtcagcacaaggaagatact
acacggaattgggaggccgaatactcaacaggcatcagtcaggccaacta
ctcatctcttctaccaacatcctgacacttagaaagcactagaaacgtga
aaacataggctgagggggatggcgtgttgactctacatagactaagattc
ctttttttaacccacataacatgtgtgatcagacaagttatttgaccaaa
cgaatatataatatgcactatttttatatcttgcatggaagataatatga
aaatgatgaaaatcacagttcttaatatccaactctatagaatacactta
gtactaagaataaattattttcttttcattatattatttaacatcttcac
aaaactactttattttttataagactgacatagcattcacactatgtcat
agaaagaccttagatattaagcttattagataatagtaatgattaagaaa
acagcatatggaagtcatcttaaatatagctctttcagaatccttgaaat
gtatgattcttaaagaaatgtaaacttttacaaatgtcattgttgtgtca
taagaatttatatttctgtctcagagtatgactttaaatttgcataaata
catattccaaatttgacggtttgggagttctaacatatgccagtttccat
aagagccatcaaaaattacatattttaagaaataactagaagagcttttt
atatcactgcaaacccctacttttaatgaatatagagaaccagtcaatgc
aggaagtctcacttcagggatggttgagtaaacactaggtgaaagggtct
ctctctctctctctctctctctctctcactcactcacacacacacacaca
cacacacacacacacacacacacatacactgtagacataaataagctctc
atttctgtgtgtaaacagtgagagtgcttggtgtgacaatgtgatcaaag
gcctcctggcctttgataaagagttccagaaagtcatctgcacctctagt
gttccattattggggcgtgggcctaaatagtcctctaatttgggagccct
gactgaaaagaaaa
gaattctgagaaagacaactaaccaccctgaccttgtgagaatccccctg
acgttaatagctgtgatgttaatagctgatccgtaagttcaaaatgtact
attactttgctggccaaatcataataacccaccatgggggcaagcaaagt
gagtcactaggccaaagagttacttagtcgctatccaaactaaccaatgc
ctgaaagggttacttgctacaccaatgagaaccctgttgctcaaatctgc
cccttacaaaggtatcgaaagtgtgttctttctttgttcttggtctctcc
tctggcctgagcgctgagaggagggtccccaacatgttggatccataaaa
atcctcatggggttggcagcgatggtggtggtctctgaggttcttgtgaa
tgagggtcttttgacgaactctaacatttggtgtgttggccaggaaggcc
ctcctcaggaggacacagacgctgtgcatcaaaggtaaaatgggatctcg
ttgtctgtctgtcttgttcacttgtgtgtcctctactagaccaccttctg
attttgttttgcttttggtttgtctggtttcaggtctggttttggtccca
aggggacaattagttatcttggtttggttttaggccggtctcaggttctg
ggggccttctcatggagaggggcctgtttggggtggtcgcagcgataggc
agacatgccaaaactttgcaggccacaacgctggaggatgtgcccggtgt
gtaaggcgccctgtattggtcttgcttgtgtttgtcatcttctgtggtac
tgtaattctatagtggtcgcctggagaacggtttctgtgtgtgtctgtgt
gtctcttgtgtcggacttggactaagactgatgactgttttgagttctgc
cctcaaaaaagcttaagattctgtcagacacatgctgactctctttcaga
tctcagctgccctgctcccactctcagctcagggatcagcagcaagttgc
aggtctgcccatagacctgagcctaggaattgagcttagaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_105979012_105980184
seq2: B6Ng01-126K22.b_49_1212

seq1  GAATTCTTTCATGCACAGGGGAGTAAGGAACAATGGAGGATGGTGCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGCACAGGGGAGTAAGGAACAATGGAGGATGGTGCTGAG  50

seq1  GCATCATGAGTAGACAGTAAGGGTTGCTTAGTCAGCACAAGGAAGATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGAGTAGACAGTAAGGGTTGCTTAGTCAGCACAAGGAAGATACT  100

seq1  ACACGGAATTGGGAGGCCGAATACTCAACAGGCATCAGTCAGGCCAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGAATTGGGAGGCCGAATACTCAACAGGCATCAGTCAGGCCAACTA  150

seq1  CTCATCTCTTCTACCAACATCCTGACACTTAGAAAGCACTAGAAACGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCTTCTACCAACATCCTGACACTTAGAAAGCACTAGAAACGTGA  200

seq1  AAACATAGGCTGAGGGGGATGGCGTGTTGACTCTACATAGACTAAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGGCTGAGGGGGATGGCGTGTTGACTCTACATAGACTAAGATTC  250

seq1  CTTTTTTTAACCCACATAACATGTGTGATCAGACAAGTTATTTGACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTAACCCACATAACATGTGTGATCAGACAAGTTATTTGACCAAA  300

seq1  CGAATATATAATATGCACTATTTTTATATCTTGCATGGAAGATAATATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATATATAATATGCACTATTTTTATATCTTGCATGGAAGATAATATGA  350

seq1  AAATGATGAAAATCACAGTTCTTAATATCCAACTCTATAGAATACACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGAAAATCACAGTTCTTAATATCCAACTCTATAGAATACACTTA  400

seq1  GTACTAAGAATAAATTATTTTCTTTTCATTATATTATTTAACATCTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAGAATAAATTATTTTCTTTTCATTATATTATTTAACATCTTCAC  450

seq1  AAAACTACTTTATTTTTTATAAGACTGACATAGCATTCACACTATGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACTTTATTTTTTATAAGACTGACATAGCATTCACACTATGTCAT  500

seq1  AGAAAGACCTTAGATATTAAGCTTATTAGATAATAGTAATGATTAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACCTTAGATATTAAGCTTATTAGATAATAGTAATGATTAAGAAA  550

seq1  ACAGCATATGGAAGTCATCTTAAATATAGCTCTTTCAGAATCCTTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATATGGAAGTCATCTTAAATATAGCTCTTTCAGAATCCTTGAAAT  600

seq1  GTATGATTCTTAAAGAAATGTAAACTTTTACAAATGTCATTGTTGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTCTTAAAGAAATGTAAACTTTTACAAATGTCATTGTTGTGTCA  650

seq1  TAAGAATTTATATTTCTGTCTCAGAGTATGACTTTAAATTTGCATAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTTATATTTCTGTCTCAGAGTATGACTTTAAATTTGCATAAATA  700

seq1  CATATTCCAAATTTGACGGTTTGGGAGTTCTAACATATGCCAGTTTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCCAAATTTGACGGTTTGGGAGTTCTAACATATGCCAGTTTCCAT  750

seq1  AAGAGCCATCAAAAATTACATATTTTAAGAAATAACTAGAAGAGCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCATCAAAAATTACATATTTTAAGAAATAACTAGAAGAGCTTTTT  800

seq1  ATATCACTGCAAACCCCTACTTTTAATGAATATAGAGAACCAGTCAATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTGCAAACCCCTACTTTTAATGAATATAGAGAACCAGTCAATGC  850

seq1  AGGAAGTCTCACTTCAGGGATGGTTGAGTAAAACACTAGGTGAAGGGTTC  900
      ||||||||||||||||||||||||||||| |||||||||||||| || ||
seq2  AGGAAGTCTCACTTCAGGGATGGTTGAGT-AAACACTAGGTGAAAGGGTC  899

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACACACACACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACACACACACACAC  949

seq1  ACACACACACACACACACACACACATACACTGTAGACATAAATAAAGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACACACACACACACACACACACACATACACTGTAGACATAAAT-AAGCTC  998

seq1  TCATTTCTGTGTGTAAACAAGTGAGAGTGCTTGGTGTGACAAATGTGGAT  1050
      |||||||||||||||||| ||||||||||||||||||||| ||||| |||
seq2  TCATTTCTGTGTGTAAAC-AGTGAGAGTGCTTGGTGTGAC-AATGT-GAT  1045

seq1  CAAAGGCCTCCTTGGCTTTGATAAAGAGGTTCCAGAAAGTCATCTGCA-C  1099
      |||||||||||| | |||||||||||| |||||||||||||||||||| |
seq2  CAAAGGCCTCCTGGCCTTTGATAAAGA-GTTCCAGAAAGTCATCTGCACC  1094

seq1  TCTAGTG-TCCATTATTGGGGCTGTGGGCTAAATTAGTCCCTCTAATTTG  1148
      ||||||| |||||||||||||| ||||||  || |||| |||||||||||
seq2  TCTAGTGTTCCATTATTGGGGC-GTGGGCCTAAATAGT-CCTCTAATTTG  1142

seq1  GAAGCCTTGAACTGAAAAAAGAAAA  1173
      | |||| || ||||  |||||||||
seq2  GGAGCCCTG-ACTG--AAAAGAAAA  1164

seq1: chr13_106082309_106083379
seq2: B6Ng01-126K22.g_67_1110 (reverse)

seq1  GAGTTTCCTAAGCTCACTCTTCCCTAGGCTCCAGGTCTATGGGCAGGACC  50
      |||||  |||||||||    | |||||||| |||||||||||||| ||| 
seq2  GAGTT--CTAAGCTCA---ATTCCTAGGCT-CAGGTCTATGGGCA-GAC-  42

seq1  ACTGCAACCTGCTGGCTGCTCCCTGGAGCTGGAGAGTGGGAGGCAGGGCA  100
       ||||||| |||| |||| ||||| ||||| |||||||||| ||||||||
seq2  -CTGCAACTTGCT-GCTGATCCCT-GAGCT-GAGAGTGGGA-GCAGGGCA  87

seq1  GCTGAGGATCTGAAAGGAAGAGGTCAGCATTGGTGTCTGACAGGATTCTT  150
      ||||| ||||||||||  ||| ||||||||  |||||||||| || ||||
seq2  GCTGA-GATCTGAAAG--AGA-GTCAGCAT--GTGTCTGACA-GAATCTT  130

seq1  AAGCTTTTTTTTGGAGGGCAGAACTCAAAAACAGTCATCAGTCCTTAGTC  200
      ||||||||||   ||||||||||||| ||||||||||||||| |||||||
seq2  AAGCTTTTTT---GAGGGCAGAACTC-AAAACAGTCATCAGT-CTTAGTC  175

seq1  CAAGTCCGAACACAAAGAGACACACAAGACACACACAGAAACCGTTCTCC  250
      |||||||| |||| ||||||||||| ||||||||||||||||||||||||
seq2  CAAGTCCG-ACAC-AAGAGACACAC-AGACACACACAGAAACCGTTCTCC  222

seq1  AGGCGACCACTATAGAATTACAGTACCACAGAAGATGACAAACACAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGACCACTATAGAATTACAGTACCACAGAAGATGACAAACACAAGCA  272

seq1  AGACCAATACAGGGCGCCTTACACACC-GGCACATCCTCCAGCGTTGTGG  349
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGACCAATACAGGGCGCCTTACACACCGGGCACATCCTCCAGCGTTGTGG  322

seq1  CCTGCAAAGTTTTGGCATGTCTGCCTATCGCTGCGACCACCCCAAACAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAGTTTTGGCATGTCTGCCTATCGCTGCGACCACCCCAAACAGG  372

seq1  CCCCTCTCCATGAGAAGGCCCCCAGAACCTGAGACCGGCCTAAAACCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCATGAGAAGGCCCCCAGAACCTGAGACCGGCCTAAAACCAAA  422

seq1  CCAAGATAACTAATTGTCCCCTTGGGACCAAAACCAGACCTGAAACCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAACTAATTGTCCCCTTGGGACCAAAACCAGACCTGAAACCAGA  472

seq1  CAAACCAAAAGCAAAACAAAATCAGAAGGTGGTCTAGTAGAGGACACACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAAGCAAAACAAAATCAGAAGGTGGTCTAGTAGAGGACACACA  522

seq1  AGTGAACAAGACAGACAGACAACGAGATCCCATTTTACCTTTGATGCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAAGACAGACAGACAACGAGATCCCATTTTACCTTTGATGCACA  572

seq1  GCGTCTGTGTCCTCCTGAGGAGGGCCTTCCTGGCCAACACACCAAATGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGTGTCCTCCTGAGGAGGGCCTTCCTGGCCAACACACCAAATGTT  622

seq1  AGAGTTCGTCAAAAGACCCTCATTCACAAGAACCTCAGAGACCACCACCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCGTCAAAAGACCCTCATTCACAAGAACCTCAGAGACCACCACCA  672

seq1  TCGCTGCCAACCCCATGAGGATTTTTATGGATCCAACATGTTGGGGACCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCCAACCCCATGAGGATTTTTATGGATCCAACATGTTGGGGACCC  722

seq1  TCCTCTCAGCGCTCAGGCCAGAGGAGAGACCAAGAACAAAGAAAGAACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAGCGCTCAGGCCAGAGGAGAGACCAAGAACAAAGAAAGAACAC  772

seq1  ACTTTCGATACCTTTGTAAGGGGCAGATTTGAGCAACAGGGTTCTCATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCGATACCTTTGTAAGGGGCAGATTTGAGCAACAGGGTTCTCATTG  822

seq1  GTGTAGCAAGTAACCCTTTCAGGCATTGGTTAGTTTGGATAGCGACTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCAAGTAACCCTTTCAGGCATTGGTTAGTTTGGATAGCGACTAAG  872

seq1  TAACTCTTTGGCCTAGTGACTCACTTTGCTTGCCCCCATGGTGGGTTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTGGCCTAGTGACTCACTTTGCTTGCCCCCATGGTGGGTTATT  922

seq1  ATGATTTGGCCAGCAAAGTAATAGTACATTTTGAACTTACGGATCAGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGGCCAGCAAAGTAATAGTACATTTTGAACTTACGGATCAGCTA  972

seq1  TTAACATCACAGCTATTAACGTCAGGGGGATTCTCACAAGGTCAGGGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCACAGCTATTAACGTCAGGGGGATTCTCACAAGGTCAGGGTGG  1022

seq1  TTAGTTGTCTTTCTCAGAATTC  1071
      ||||||||||||||||||||||
seq2  TTAGTTGTCTTTCTCAGAATTC  1044