BAC Information

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BAC

Clone NameB6Ng01-128B18
Chromosome13 (Build37)
Map Location 21,461,466 - 21,589,768
singlet/doubletdoublet
Overlap geneZfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367
Downstream geneLOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128B18.bB6Ng01-128B18.g
ACCDH930049DH930050
length1,1501,165
definitionDH930049|Mus musculus domesticus DNA, BAC clone: B6Ng01-128B18, 5' end.DH930050|Mus musculus domesticus DNA, BAC clone: B6Ng01-128B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,461,466 - 21,462,620)(21,588,619 - 21,589,768)
sequence
gaattcattatagaagtggtccctaaaagtgtaatgggcgtggggaattg
ttcacgtagaactcagctcttactcatcatcagactagtcacaaaagagc
aagtactctgtgtgatgactacagggaagctacctcacggtgtcggctga
tgaagagtattgtatttgtaatgctttgtggtgacatttcagcctttgct
gttacgagaccataaatatttgatgagctccctctgtatactgtcctttg
tgtgtggctgtggaggaagtctaactccagatttcttagaacatttacaa
ctaagccagagatgtggaagtctaccatagttaaagagaagggcagtgga
attgatgctcagcgtgctttagaattaaagtagtagaaaatatttttgaa
ggaccaactccttgtacacctgctcaggaaagatttctgaaattattttt
attgaaaataagtgtttggtgggtagatctggaagagaaaagggagaaca
cttttggtgaaataggtgagcagaagcaagagtgcaggtagtttggaagc
cagcctactagagagttgttttaagtgttgagctgatgggcattaaatgg
aaatagcttgaggacagagtaggaggatggtctaggaatgctagccaatc
aatgcttgtggtgcactgacagagcactcttctcctttgtctctaaaata
tctctaagtatacatgtattgtagaagcgatatggtcattcatacttgtt
tatcacagcatatctcaagatgctgaagcagaggattaggagttcaaggc
ctgcctgagctacatgaaacctaaagaaaaagaaagcaggatgcaggagg
ctggagagatggctcagcagttaagagcacttgttgctcttgtagataac
ccgggtttggtttctatcacccacatggtgatggctcaaagccatctata
actgggttctagggcatctgattcttcttctgatttgtaggcatgaggga
caagttgtgaatgttacatgcaggcaaccacttcctacataatagtgcag
atgacagctgtttatactcagcgaggaagaacagaaacaaggttctgtaa
atcggcttcaatcagctggtgacatccactatacccaacaggggcaaaca

gaattccacacccctaagccccttaccccataaaaaaccctagctttcga
gcctcgtggccgacatccgttatctcctgtgtgggatgcatgtcggtcca
gagctctgtaattaaactacctcgtgtagttacatcaaaatggtccttcg
tgatttttttgggtgctcaggaatcgagtggggggggtttctccactagg
ttctatcagattcagtaagaatgatgactgagcagccaaagacagagctt
gttaaaaaaaaacaaacaaaccaaaactccagttcctgtgaccttgagca
agtagaaaacaaaacaaaacaaaacaaaataacaagaaaaaaaacccttc
atctcaaagttgtggctctggaattccatgaattgaaaaaggtgcagtgg
tgtagaagggaattcagcaccgtccaagctagaaggtgatattcctcagg
ccttaagcttcagattcggaattatgagagcctcatggaagggccctgcc
cctgcacccaccttggtatcaccaagactgatatctctaggtttagagag
atttacactctaggtttagccacacacagggtggcttctgcccctgttct
cctagcagagctgggcttggcttatgagtgtgtcccctgcttctacaacc
acatgagaccgatttcagttctgtagttccttctggttacttgacgttga
agttgaggaattctcaaaaataatgatagtgatctacttcaaattctact
ttcttttttttttttcataaagatgaatgttttaaatcaacaactcaatc
tcttcatacaataattgcacaaattaaaggatgtatcaacaattcttatt
ttatgatacagactcatcaacatttcatattaaactacgagttgggtaat
atttttggtggtaggtatttttagtaaatagccacaaatattaaacttca
gctgcatgaagacttcagccttccacaaaagaattcacaggttacttaga
tgtccaaacctaagttcatcaagaccactttaaggaaaaacttgggaatc
caggcatgaatgcacatgcctctaaagggttgaagcaggaggaattgctg
tccaaggcttgctggtagtatcaagcaaacactagcttcaaaaactagtg
ataaaatatttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21461466_21462620
seq2: B6Ng01-128B18.b_47_1196

seq1  GAATTCATTATAGAAGTGGTCCCTAAAAGTGTAATGGGCGTGGGGAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATAGAAGTGGTCCCTAAAAGTGTAATGGGCGTGGGGAATTG  50

seq1  TTCACGTAGAACTCAGCTCTTACTCATCATCAGACTAGTCACAAAAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTAGAACTCAGCTCTTACTCATCATCAGACTAGTCACAAAAGAGC  100

seq1  AAGTACTCTGTGTGATGACTACAGGGAAGCTACCTCACGGTGTCGGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCTGTGTGATGACTACAGGGAAGCTACCTCACGGTGTCGGCTGA  150

seq1  TGAAGAGTATTGTATTTGTAATGCTTTGTGGTGACATTTCAGCCTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTATTGTATTTGTAATGCTTTGTGGTGACATTTCAGCCTTTGCT  200

seq1  GTTACGAGACCATAAATATTTGATGAGCTCCCTCTGTATACTGTCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGAGACCATAAATATTTGATGAGCTCCCTCTGTATACTGTCCTTTG  250

seq1  TGTGTGGCTGTGGAGGAAGTCTAACTCCAGATTTCTTAGAACATTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTGTGGAGGAAGTCTAACTCCAGATTTCTTAGAACATTTACAA  300

seq1  CTAAGCCAGAGATGTGGAAGTCTACCATAGTTAAAGAGAAGGGCAGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCAGAGATGTGGAAGTCTACCATAGTTAAAGAGAAGGGCAGTGGA  350

seq1  ATTGATGCTCAGCGTGCTTTAGAATTAAAGTAGTAGAAAATATTTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCTCAGCGTGCTTTAGAATTAAAGTAGTAGAAAATATTTTTGAA  400

seq1  GGACCAACTCCTTGTACACCTGCTCAGGAAAGATTTCTGAAATTATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAACTCCTTGTACACCTGCTCAGGAAAGATTTCTGAAATTATTTTT  450

seq1  ATTGAAAATAAGTGTTTGGTGGGTAGATCTGGAAGAGAAAAGGGAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATAAGTGTTTGGTGGGTAGATCTGGAAGAGAAAAGGGAGAACA  500

seq1  CTTTTGGTGAAATAGGTGAGCAGAAGCAAGAGTGCAGGTAGTTTGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTGAAATAGGTGAGCAGAAGCAAGAGTGCAGGTAGTTTGGAAGC  550

seq1  CAGCCTACTAGAGAGTTGTTTTAAGTGTTGAGCTGATGGGCATTAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACTAGAGAGTTGTTTTAAGTGTTGAGCTGATGGGCATTAAATGG  600

seq1  AAATAGCTTGAGGACAGAGTAGGAGGATGGTCTAGGAATGCTAGCCAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTTGAGGACAGAGTAGGAGGATGGTCTAGGAATGCTAGCCAATC  650

seq1  AATGCTTGTGGTGCACTGACAGAGCACTCTTCTCCTTTGTCTCTAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGTGGTGCACTGACAGAGCACTCTTCTCCTTTGTCTCTAAAATA  700

seq1  TCTCTAAGTATACATGTATTGTAGAAGCGATATGGTCATTCATACTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGTATACATGTATTGTAGAAGCGATATGGTCATTCATACTTGTT  750

seq1  TATCACAGCATATCTCAAGATGCTGAAGCAGGAGGATTAGGAGTTCAAGG  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATCACAGCATATCTCAAGATGCTGAAGCA-GAGGATTAGGAGTTCAAGG  799

seq1  CCTGCCTGAGCTACATGAAACCTAAAGAAAAAGAAAGCAGGATGCAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGAGCTACATGAAACCTAAAGAAAAAGAAAGCAGGATGCAGGAG  849

seq1  GCTGGAGAGATGGCTCAGCAGTTAAGAGCACTTGTTGCTCTTGTAGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATGGCTCAGCAGTTAAGAGCACTTGTTGCTCTTGTAGATAA  899

seq1  CCCGGGTTTGGTTTCTATCACCCACATGGTGATGGCTCAAAGCCATCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGTTTGGTTTCTATCACCCACATGGTGATGGCTCAAAGCCATCTAT  949

seq1  AACT-GGTTCTAGGGCATCTGATTCCTTCTTCTGATCTGTAGGCATGAGG  999
      |||| ||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AACTGGGTTCTAGGGCATCTGATT-CTTCTTCTGATTTGTAGGCATGAGG  998

seq1  GACAAG-TGTGTATG-TACATGCAGGCAAACCAC-TCCTACACATAAATA  1046
      |||||| |||| ||| ||||||||||| |||||| |||||||    ||||
seq2  GACAAGTTGTGAATGTTACATGCAGGC-AACCACTTCCTACA---TAATA  1044

seq1  GTGCAGATGACAGCTG-TTATACCACAGCGAGGAAGACCAGAAACCAAGT  1095
      |||||||||||||||| ||||| | |||||||||||| ||||||| | ||
seq2  GTGCAGATGACAGCTGTTTATA-CTCAGCGAGGAAGAACAGAAACAAGGT  1093

seq1  TCTTGTATCT-GGCTTCCAATCCAGTCTGTGACATCCACTATACCCCAAC  1144
      || ||||  | ||||| |||| |||   ||||||||||||||| ||||||
seq2  TC-TGTAAATCGGCTT-CAAT-CAGCTGGTGACATCCACTATA-CCCAAC  1139

seq1  ATGGGCAAACA  1155
      | |||||||||
seq2  AGGGGCAAACA  1150

seq1: chr13_21588619_21589768
seq2: B6Ng01-128B18.g_68_1232 (reverse)

seq1  TTTTAAATATTTTTATCACTAGTTTTTTGAGCCATGGTTTTGCTGTATAC  50
      ||||||||| |||||||||||||||||  ||| | |  ||||||  ||||
seq2  TTTTAAATA-TTTTATCACTAGTTTTTGAAGCTA-GTGTTTGCTTGATAC  48

seq1  TACAGGCCAGCCTTGAAC-GCACAATCCTCCTGCTTCAA-CCTTCTGAGG  98
      |||  || ||||||| || ||| | |||||||||||||| ||||  ||||
seq2  TACCAGCAAGCCTTGGACAGCA-ATTCCTCCTGCTTCAACCCTTTAGAGG  97

seq1  CATGTGCTACCATGCCTGGA-TCCCAAGTTTTTCCTT-AAGTGGTCTTGA  146
      |||||||   |||||||||| |||||||||||||||| ||||||||||||
seq2  CATGTGCATTCATGCCTGGATTCCCAAGTTTTTCCTTAAAGTGGTCTTGA  147

seq1  TTGACTT-GGGTTGGACATCTTAAGTAACCTGTGAATTCTTTTGTGGAAG  195
      |  |||| || ||||||||| |||||||||||||||||||||||||||||
seq2  TGAACTTAGGTTTGGACATC-TAAGTAACCTGTGAATTCTTTTGTGGAAG  196

seq1  GCTG-AGTC-TCATGCAGCTG-AGTTTAATATTTGT-GCTATTTACT-AA  240
      |||| |||| ||||||||||| |||||||||||||| |||||||||| ||
seq2  GCTGAAGTCTTCATGCAGCTGAAGTTTAATATTTGTGGCTATTTACTAAA  246

seq1  AATACCTACCACC-AAAATAT--ACCAACTCGTAGTTTTATATG-AATGT  286
      ||||||||||||| |||||||   |||||||||||||| ||||| |||||
seq2  AATACCTACCACCAAAAATATTACCCAACTCGTAGTTTAATATGAAATGT  296

seq1  TGATGAGTCTGTATCATAAA--TAGAATTGTTGATACATCC-TTAATTTG  333
      ||||||||||||||||||||   |||||||||||||||||| ||||||||
seq2  TGATGAGTCTGTATCATAAAATAAGAATTGTTGATACATCCTTTAATTTG  346

seq1  TGCAA-TATTGTATGAAGAGATTGAGTTGTTGATTTAAAACATTCATCTT  382
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTATTGTATGAAGAGATTGAGTTGTTGATTTAAAACATTCATCTT  396

seq1  TATG-AAAAAAAAAAAGAAAGTAGAATTTGAAGTAGATCACTATCATTAT  431
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAAAAAAAAAGAAAGTAGAATTTGAAGTAGATCACTATCATTAT  446

seq1  TTTTGAGAATTCCTCAACTTCAACGTCAAGTAACCAGAAGGAACTACAGA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAATTCCTCAACTTCAACGTCAAGTAACCAGAAGGAACTACAGA  496

seq1  ACTGAAATCGGTCTCATGTGGTTGTAGAAGCAGGGGACACACTCATAAGC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATCGGTCTCATGTGGTTGTAGAAGCAGGGGACACACTCATAAGC  546

seq1  CAAGCCCAGCTCTGCTAGGAGAACAGGGGCAGAAGCCACCCTGTGTGTGG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCAGCTCTGCTAGGAGAACAGGGGCAGAAGCCACCCTGTGTGTGG  596

seq1  CTAAACCTAGAGTGTAAATCTCTCTAAACCTAGAGATATCAGTCTTGGTG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTAGAGTGTAAATCTCTCTAAACCTAGAGATATCAGTCTTGGTG  646

seq1  ATACCAAGGTGGGTGCAGGGGCAGGGCCCTTCCATGAGGCTCTCATAATT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGGTGGGTGCAGGGGCAGGGCCCTTCCATGAGGCTCTCATAATT  696

seq1  CCGAATCTGAAGCTTAAGGCCTGAGGAATATCACCTTCTAGCTTGGACGG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATCTGAAGCTTAAGGCCTGAGGAATATCACCTTCTAGCTTGGACGG  746

seq1  TGCTGAATTCCCTTCTACACCACTGCACCTTTTTCAATTCATGGAATTCC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATTCCCTTCTACACCACTGCACCTTTTTCAATTCATGGAATTCC  796

seq1  AGAGCCACAACTTTGAGATGAAGGGTTTTTTTTCTTGTTATTTTGTTTTG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACAACTTTGAGATGAAGGGTTTTTTTTCTTGTTATTTTGTTTTG  846

seq1  TTTTGTTTTGTTTTCTACTTGCTCAAGGTCACAGGAACTGGAGTTTTGGT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTCTACTTGCTCAAGGTCACAGGAACTGGAGTTTTGGT  896

seq1  TTGTTTGTTTTTTTTTAACAAGCTCTGTCTTTGGCTGCTCAGTCATCATT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTTTTAACAAGCTCTGTCTTTGGCTGCTCAGTCATCATT  946

seq1  CTTACTGAATCTGATAGAACCTAGTGGAGAAACCCCCCCCACTCGATTCC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGAATCTGATAGAACCTAGTGGAGAAACCCCCCCCACTCGATTCC  996

seq1  TGAGCACCCAAAAAAATCACGAAGGACCATTTTGATGTAACTACACGAGG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCCAAAAAAATCACGAAGGACCATTTTGATGTAACTACACGAGG  1046

seq1  TAGTTTAATTACAGAGCTCTGGACCGACATGCATCCCACACAGGAGATAA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAATTACAGAGCTCTGGACCGACATGCATCCCACACAGGAGATAA  1096

seq1  CGGATGTCGGCCACGAGGCTCGAAAGCTAGGGTTTTTTATGGGGTAAGGG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGTCGGCCACGAGGCTCGAAAGCTAGGGTTTTTTATGGGGTAAGGG  1146

seq1  GCTTAGGGGTGTGGAATTC  1150
      |||||||||||||||||||
seq2  GCTTAGGGGTGTGGAATTC  1165