BAC Information

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BAC

Clone NameB6Ng01-129E15
Chromosome13 (Build37)14 (Build37)
Map Location 80,498,820 - 80,498,97637,359,675 - 37,360,853
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129E15.bB6Ng01-129E15.g
ACCDH930914DH930915
length8451,154
definitionDH930914|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E15, 5' end.DH930915|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,498,820 - 80,498,976)(37,359,675 - 37,360,853)
sequence
gaattcctgatctttcaaagacttttaacattaagacatgttgaattttg
tcaaatgctttttcagcatctaatgaggtgatcatgtggtttttctcctt
tgagtttgcttatatagtggatttctatatattgaaccatcccttcatca
ctgggatgaagcctacttgatcatggtgaatgataatttcgatgttttct
tggattaagtttgtgaacattttgttgagtaattttgcatagatattcat
aaggtctgaagttctccttctttgttgcatctttgtgtggttttggtatc
agcataactgtggctttatagaatgaataatgttccttttgtttttattt
tctggaatagtgtgagaggtattggtattgggtcttctttgaagttctag
tagaattctgcccgtaaatccatctggtcctgggttctttttggttggga
gacttttaatgactgtttctatttctttaggggttataggactgtttaga
cagtttatctgatcctgatttaacttgggcatttggtatctgtttagaaa
attttccatttcatctagtttttccagttttgttgactataggcttctgt
agtaggatctgttgatttttagaatttccatggtttctgttgttatgtct
cccttttcattgttgattttgttaatttggatactgtctctgtgccctct
ggttagtctgaatgagtgtttatctatcttgttgattttctcaaagaacc
agttgctggttttgttgattccttgtatacttctcttcttcttctttttc
ttcttcttcttctcttcttcttcttcttcttcttcttcttcttct
gaattcttctgtaatcggagacaaggaaaaactttcccaataaagcatat
attctaatttgctaaagaaagaggttcatgtatctgaccctattaaaatg
aaagaaaattactagagagcaaattaaaaacaatggattccaaaagctaa
atgataagaaactttgcaactaataccaaagagtaactgtccttaatgta
tacaaacttcttaaaatagggaataaaacttcttagtaaaattaaagaca
caaccaaccaattaagaggaaatgtatactccttaaattaggaaataatc
agccccactcatattgagacatgaagataaaagtacatatataacatttc
taaatctgataaagtttcaaagttcatggttaagatacctatatggaaat
aggtttttttacaaattgctataggaatgccatattggtgggggacctaa
agtgtatcccataaagtaattgaaaagttctggtcacttttatccttttg
attgtcaacacatcagtaaacacactggtaaaaatgcaagacaattcctt
ttattatctacttatgtatttgaccaagataaaagaagaaatcacccaaa
tatataagagaagaagatggatgaataagcttctatagatccatagaaca
gggtgggcctatggttattttaactttaaagtaatattttctatctttgt
ttattaaaaatatgaatcttataaattagaggtcagacatgtagaaatga
ccaccattacagcctacaccatgggtctctcaataacagttctcatggaa
aagaaccagatctcctggactacaacaagaaatgaaaaagcaagtgagca
tcccttcctaactgaaaagggcgaatgctaaaaccaagttggcgactgtg
aaggtgaagggaccacagccttcatatcaggagaagtcatggattagaca
ctgaaatctttttctttctttttttttccttataaaaacaacattactgg
gctgccttacaggttcagaggtcagtccattatcatcaagtagaagcatg
gcagcatccagcagcatgcgcagcagagctgaaagttctacatcttcatc
aaagctctagtggtgactgactctcagcactaggtgagaattagcccacc
ccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80498820_80498976
seq2: B6Ng01-129E15.b_825_890 (reverse)

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGG  50
      ||||||||||||||||||||||||||||||||| || || || || ||  
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA-GAAGAAGAAGAAGAAA  49

seq1  AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGGGGAGGAGGAG  100
      | || || || ||| ||                                 
seq2  AAGAAGAAGAAGAGAAG---------------------------------  66

seq1  GAGGAGGAGGAGGACAGGGAGGGGAAGCAGGAGGGAGACGGAGAAGAAGA  150
                                                        
seq2  --------------------------------------------------  66

seq1  AGAGAAG  157
             
seq2  -------  66

seq1: chr14_37359675_37360853
seq2: B6Ng01-129E15.g_69_1222

seq1  GAATTCTTCTGTAATCGGAGACAAGGAAAAACTTTCCCAATAAAGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTAATCGGAGACAAGGAAAAACTTTCCCAATAAAGCATAT  50

seq1  ATTCTAATTTGCTAAAGAAAGAGGTTCATGTATCTGACCCTATTAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATTTGCTAAAGAAAGAGGTTCATGTATCTGACCCTATTAAAATG  100

seq1  AAAGAAAATTACTAGAGAGCAAATTAAAAACAATGGATTCCAAAAGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATTACTAGAGAGCAAATTAAAAACAATGGATTCCAAAAGCTAA  150

seq1  ATGATAAGAAACTTTGCAACTAATACCAAAGAGTAACTGTCCTTAATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAGAAACTTTGCAACTAATACCAAAGAGTAACTGTCCTTAATGTA  200

seq1  TACAAACTTCTTAAAATAGGGAATAAAACTTCTTAGTAAAATTAAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTTCTTAAAATAGGGAATAAAACTTCTTAGTAAAATTAAAGACA  250

seq1  CAACCAACCAATTAAGAGGAAATGTATACTCCTTAAATTAGGAAATAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAATTAAGAGGAAATGTATACTCCTTAAATTAGGAAATAATC  300

seq1  AGCCCCACTCATATTGAGACATGAAGATAAAAGTACATATATAACATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACTCATATTGAGACATGAAGATAAAAGTACATATATAACATTTC  350

seq1  TAAATCTGATAAAGTTTCAAAGTTCATGGTTAAGATACCTATATGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGATAAAGTTTCAAAGTTCATGGTTAAGATACCTATATGGAAAT  400

seq1  AGGTTTTTTTACAAATTGCTATAGGAATGCCATATTGGTGGGGGACCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTTTACAAATTGCTATAGGAATGCCATATTGGTGGGGGACCTAA  450

seq1  AGTGTATCCCATAAAGTAATTGAAAAGTTCTGGTCACTTTTATCCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATCCCATAAAGTAATTGAAAAGTTCTGGTCACTTTTATCCTTTTG  500

seq1  ATTGTCAACACATCAGTAAACACACTGGTAAAAATGCAAGACAATTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAACACATCAGTAAACACACTGGTAAAAATGCAAGACAATTCCTT  550

seq1  TTATTATCTACTTATGTATTTGACCAAGATAAAAGAAGAAATCACCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCTACTTATGTATTTGACCAAGATAAAAGAAGAAATCACCCAAA  600

seq1  TATATAAGAGAAGAAGATGGATGAATAAGCTTCTATAGATCCATAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGAGAAGAAGATGGATGAATAAGCTTCTATAGATCCATAGAACA  650

seq1  GGGTGGGCCTATGGTTATTTTAACTTTAAAGTAATATTTTCTATCTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCCTATGGTTATTTTAACTTTAAAGTAATATTTTCTATCTTTGT  700

seq1  TTATTAAAAATATGAATCTTATAAATTAGAGGTCAGACATGTAGAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAATATGAATCTTATAAATTAGAGGTCAGACATGTAGAAATGA  750

seq1  CCACCATTACAGCCTACACCAT-GGTCTCTCAATAACAGTTCTCATGGAA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCACCATTACAGCCTACACCATGGGTCTCTCAATAACAGTTCTCATGGAA  800

seq1  AAGAACCAGATCTCCTGGACTACAACAAGAAATGAAAAAGCAAGTGAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAGATCTCCTGGACTACAACAAGAAATGAAAAAGCAAGTGAGCA  850

seq1  TCCCTTCCTAACTGAAAAGGGCGAATGCTAAAACCAAGTTGGCGACTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTAACTGAAAAGGGCGAATGCTAAAACCAAGTTGGCGACTGTG  900

seq1  AAGGGTGAAGGGACCACAGCCTTCAATATCAGGAGAAGTCAATGGATTAA  949
      || ||||||||||||||||||||| ||||||||||||||| ||||||| |
seq2  AA-GGTGAAGGGACCACAGCCTTC-ATATCAGGAGAAGTC-ATGGATT-A  946

seq1  GACACTGAAAATCTTTTTCTTTCTTTTTTTTTTCCTTATAAAAAACAACA  999
      ||||||| ||||||||||||||| ||||||||||||||| ||||||||||
seq2  GACACTG-AAATCTTTTTCTTTC-TTTTTTTTTCCTTAT-AAAAACAACA  993

seq1  TTTACTTGGGGCTGCCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAA  1049
       |||||  ||||||||||||||||||||||| ||||||||||||||||||
seq2  -TTACT--GGGCTGCCTTACAGGTTCAGAGG-TCAGTCCATTATCATCAA  1039

seq1  GGTAGAAGCATGGCAGCATCCAGGCAGGCATGGCGCAGGCAGAGCTGAGA  1099
       ||||||||||||||||||||| ||| |||| ||||| |||||||||| |
seq2  -GTAGAAGCATGGCAGCATCCA-GCA-GCAT-GCGCA-GCAGAGCTGAAA  1084

seq1  GTTCTACATCTTCATCCAAAGGCTCCTAGTGGAAGACTGACTTCCAGGCA  1149
      ||||||||||||||||  || ||| |||||||  ||||||||  |||   
seq2  GTTCTACATCTTCATC--AAAGCT-CTAGTGG-TGACTGACTCTCAG--C  1128

seq1  ACTAGGGTGAGGATATTAAGCCCACACCCA  1179
      |||| ||||||   | | ||||||| ||||
seq2  ACTA-GGTGAG---AATTAGCCCACCCCCA  1154