BAC Information

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BAC

Clone NameB6Ng01-129H13
Chromosome13 (Build37)
Map Location 9,840,860 - 9,992,905
singlet/doubletdoublet
Overlap geneChrm3, LOC100039604
Upstream geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129H13.bB6Ng01-129H13.g
ACCDH931046DH931047
length1,139942
definitionDH931046|Mus musculus domesticus DNA, BAC clone: B6Ng01-129H13, 5' end.DH931047|Mus musculus domesticus DNA, BAC clone: B6Ng01-129H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,840,860 - 9,842,014)(9,991,965 - 9,992,905)
sequence
gaattctcggtttaatgggttttctattttgtaatggtgtataaaatgat
ttgtttcactagctggcactctgcactgtatggattttattgtgtcaagc
tttggcatatgccatagagtatcaagagtggggtctttcattttgcacat
tgtggggagccgccctcacattcgccgttgcaagatggcgctgacatgct
gtgttctaagtggtaaacaaataatctgcgcatgtgccaagggtagtttt
ccactacatgtgctctgccttccccgtgacgacaactcggccgatgggct
gcagcaaatcagggagtaatacgtcctaggcggagaataattctccttaa
aaagggacggggtttcgccattctctctcttgctctggctcttgcttctt
gctcctaaagatgtaagcaataaagcttttgcactcttgctcttgccctc
ttgcactcttgctttctttctcttgctttcttgttcttgttctttttctt
gctttctttctctctcttgctcttgctttcttgctcttgttctttctctc
tctctcttgctctcttgcactctggctcctgaagatgtaagcaataaagc
tttgctgcagaagattccggtttgttgcgtctttcctggccggttgcgag
aacgcgtgtaagagcacattttaaacaaaactagatttttctaaaggtaa
tttcacttcctgctttgagttcatatgttcctgagtccccgtgtgcttgt
ggaggtcagaagaagactgccttgctcccttgaggcagggcctctctctg
agcctgtgtctagactggcccggtatcccgtgatctgtgtctctttgtat
ttcctccctacaacactgatgtaacaggaacatacttgaaaaatgagccc
tggtattagactacactcacaggccagccattctagatgctcagctgtac
aaagcatcatacagagtagtcatagatcacgtgatgtcagatgtttaccg
tctctgtgttggtttgacgctctgacatctacctactatgtacctaagaa
aagattaatattgatttaatgcatatgactgtttggctgctgtgattagg
gtacttgtaacacgatgtgagactcgctggtgttggccc

gaattcagtactggagtttatatttctgaaaggccactctggatttgggg
taaaagtggtcggcaggggatacatgggagaatagatgagtaatgagtgg
gagttagtaagataagagcatgacaaggtgatcaaagctgtgatccaccc
acaggtgtgactttcatacatgtaactgtttgaatctaaaatgtccccca
cagagggttttcatgtgtcaaatgcttagtccttagctaatgctaccatt
ttggaatttttttggaccctttgaagtggaaaccctaactagcagatgca
ggttagtggcaggcagccttgacacccatctctggttcctgccagacccc
tttgttgcctagcaaactgagatatgggaagccatatccagaagctctta
ccacccccagacaaagctgttcccccatattctccccgtcactgtggacc
agattacatgaaaccaggagccaacataaatatttcttctcttaagtcat
ttttgtctggcattttatcatagccacaaacaaacaagcataatataact
atcataaaacaaaggtaaatagtagcaactcagagaattcatatagacag
tctagaaaggaaagatatatgatgagtttgattttggatttctggatctg
aaatgccagttataaaatcatgggacccacccagttgaagaaccctatct
ggaattctgggagcaatctcgttttcagagagaattttttcctcaaagtt
ggctggtagtggtatgaattcaggcagtttggataaagctatccccatat
ggcacaagggctctatgaattgcagatggaggctttgccattcagactaa
tcagaagctgtgtagaagattgaaagaagctggcaaaggctgagaaagca
aaaagttatcaaatcctcatagccaggaaaaaaagaagtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_9840860_9842014
seq2: B6Ng01-129H13.b_44_1182

seq1  GAATTCTCGGTTTAATGGGTTTTCTATTTTGTAATGGTGTATAAAATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGTTTAATGGGTTTTCTATTTTGTAATGGTGTATAAAATGAT  50

seq1  TTGTTTCACTAGCTGGCACTCTGCACTGTATGGATTTTATTGTGTCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCACTAGCTGGCACTCTGCACTGTATGGATTTTATTGTGTCAAGC  100

seq1  TTTGGCATATGCCATAGAGTATCAAGAGTGGGGTCTTTCATTTTGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATATGCCATAGAGTATCAAGAGTGGGGTCTTTCATTTTGCACAT  150

seq1  TGTGGGGAGCCGCCCTCACATTCGCCGTTGCAAGATGGCGCTGACATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAGCCGCCCTCACATTCGCCGTTGCAAGATGGCGCTGACATGCT  200

seq1  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTT  250

seq1  CCACTACATGTGCTCTGCCTTCCCCGTGACGACAACTCGGCCGATGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACATGTGCTCTGCCTTCCCCGTGACGACAACTCGGCCGATGGGCT  300

seq1  GCAGCAAATCAGGGAGTAATACGTCCTAGGCGGAGAATAATTCTCCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAATCAGGGAGTAATACGTCCTAGGCGGAGAATAATTCTCCTTAA  350

seq1  AAAGGGACGGGGTTTCGCCATTCTCTCTCTTGCTCTGGCTCTTGCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACGGGGTTTCGCCATTCTCTCTCTTGCTCTGGCTCTTGCTTCTT  400

seq1  GCTCCTAAAGATGTAAGCAATAAAGCTTTTGCACTCTTGCTCTTGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAAAGATGTAAGCAATAAAGCTTTTGCACTCTTGCTCTTGCCCTC  450

seq1  TTGCACTCTTGCTTTCTTTCTCTTGCTTTCTTGTTCTTGTTCTTTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTCTTGCTTTCTTTCTCTTGCTTTCTTGTTCTTGTTCTTTTTCTT  500

seq1  GCTTTCTTTCTCTCTCTTGCTCTTGCTTTCTTGCTCTTGTTCTTTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTCTCTCTCTTGCTCTTGCTTTCTTGCTCTTGTTCTTTCTCTC  550

seq1  TCTCTCTTGCTCTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTGCTCTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGC  600

seq1  TTTGCTGCAGAAGATTCCGGTTTGTTGCGTCTTTCCTGGCCGGTTGCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCAGAAGATTCCGGTTTGTTGCGTCTTTCCTGGCCGGTTGCGAG  650

seq1  AACGCGTGTAAGAGCACATTTTAAACAAAACTAGATTTTTCTAAAGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGTGTAAGAGCACATTTTAAACAAAACTAGATTTTTCTAAAGGTAA  700

seq1  TTTCACTTCCTGCTTTGAGTTCATATGTTCCTGAGTCCCCGTGTGCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTCCTGCTTTGAGTTCATATGTTCCTGAGTCCCCGTGTGCTTGT  750

seq1  GGAGGTCAGAAGAAGACTGCCTTGCTCCCTTGAGGCAGGGCCTCTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAGAAGAAGACTGCCTTGCTCCCTTGAGGCAGGGCCTCTCTCTG  800

seq1  AGCCTGTGTCTAGACTGGCCCGGTATCCCGTGATCTGTGTCTCTTTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGTCTAGACTGGCCCGGTATCCCGTGATCTGTGTCTCTTTGTAT  850

seq1  TTCCTCCCTACAACACTGATGTAACAGGAACATACTTGAAAAATGAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTACAACACTGATGTAACAGGAACATACTTGAAAAATGAGCCC  900

seq1  TGGTATTAGACTACACTCACAGGCCAGGCCATTCTAGATGCTCAGCTGTA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGTATTAGACTACACTCACAGGCCA-GCCATTCTAGATGCTCAGCTGTA  949

seq1  CAAAGCATCATACAGAGTAGTCATAGATCACAGTGATGTCAGATGTTTAC  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAAGCATCATACAGAGTAGTCATAGATCAC-GTGATGTCAGATGTTTAC  998

seq1  CGTCTCTGTGTTGGTTTTGACGGCTCTGACATCTACCTACTATGTAACTA  1050
      |||||||||||||| |||||| |||||||||||||||||||||||| || 
seq2  CGTCTCTGTGTTGG-TTTGAC-GCTCTGACATCTACCTACTATGTACCT-  1045

seq1  AAAGAAAAGATCTATTATTGTATTTTATGCATATGACTGTTTGCCTGCCT  1100
       |||||||||| || ||||| |||| ||||||||||||||||| ||| ||
seq2  -AAGAAAAGAT-TAATATTG-ATTTAATGCATATGACTGTTTGGCTG-CT  1091

seq1  GTGAGTAAGGGTACCATGTACACACAGATGTGAAGACTCTGCTGGTTGTT  1150
      |||| | |||||| | |||| |||| |||||| |||||| ||||| ||||
seq2  GTGA-TTAGGGTA-CTTGTA-ACAC-GATGTG-AGACTC-GCTGG-TGTT  1134

seq1  GGCCC  1155
      |||||
seq2  GGCCC  1139


seq1: chr13_9991965_9992905
seq2: B6Ng01-129H13.g_66_1007 (reverse)

seq1  GACACTCTTTTTTTTCTTGGCTTATGA-GATTTGATACTTTTTTGCTTTC  49
      ||||||  |||||||| |||| ||||| |||||||||  |||||||||||
seq2  GACACTTCTTTTTTTCCTGGC-TATGAGGATTTGATAACTTTTTGCTTTC  49

seq1  TCCAGCCTTTGCCAGCTTCTTTCAATCTTCTACACAGCTTCTGATTAGTA  99
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  T-CAGCCTTTGCCAGCTTCTTTCAATCTTCTACACAGCTTCTGATTAGT-  97

seq1  CTG-ATTGCCAAGCCTCCATCTGCACTTCATAGAGCCCTTGTGCCATATG  148
      ||| || || ||||||||||||||| ||||||||||||||||||||||||
seq2  CTGAATGGCAAAGCCTCCATCTGCAATTCATAGAGCCCTTGTGCCATATG  147

seq1  GGGATAGCTTTATCCAAACTGCCTGAATTCATACCACTACCAGCC-ACCT  197
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  GGGATAGCTTTATCCAAACTGCCTGAATTCATACCACTACCAGCCAACTT  197

seq1  TGAGG-AAAAATTCTCTCTGAAAACGAGATTGCTCCCAGAATTCCAGATA  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAAAATTCTCTCTGAAAACGAGATTGCTCCCAGAATTCCAGATA  247

seq1  GGGTTCTTCAACTGGGTGGGTCCCATGATTTTATAACTGGCATTTCAGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTCAACTGGGTGGGTCCCATGATTTTATAACTGGCATTTCAGAT  297

seq1  CCAGAAATCCAAAATCAAACTCATCATATATCTTTCCTTTCTAGACTGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCCAAAATCAAACTCATCATATATCTTTCCTTTCTAGACTGTC  347

seq1  TATATGAATTCTCTGAGTTGCTACTATTTACCTTTGTTTTATGATAGTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAATTCTCTGAGTTGCTACTATTTACCTTTGTTTTATGATAGTTA  397

seq1  TATTATGCTTGTTTGTTTGTGGCTATGATAAAATGCCAGACAAAAATGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGCTTGTTTGTTTGTGGCTATGATAAAATGCCAGACAAAAATGAC  447

seq1  TTAAGAGAAGAAATATTTATGTTGGCTCCTGGTTTCATGTAATCTGGTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAAGAAATATTTATGTTGGCTCCTGGTTTCATGTAATCTGGTCC  497

seq1  ACAGTGACGGGGAGAATATGGGGGAACAGCTTTGTCTGGGGGTGGTAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACGGGGAGAATATGGGGGAACAGCTTTGTCTGGGGGTGGTAAGA  547

seq1  GCTTCTGGATATGGCTTCCCATATCTCAGTTTGCTAGGCAACAAAGGGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGATATGGCTTCCCATATCTCAGTTTGCTAGGCAACAAAGGGGT  597

seq1  CTGGCAGGAACCAGAGATGGGTGTCAAGGCTGCCTGCCACTAACCTGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGAACCAGAGATGGGTGTCAAGGCTGCCTGCCACTAACCTGCAT  647

seq1  CTGCTAGTTAGGGTTTCCACTTCAAAGGGTCCAAAAAAATTCCAAAATGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTTAGGGTTTCCACTTCAAAGGGTCCAAAAAAATTCCAAAATGG  697

seq1  TAGCATTAGCTAAGGACTAAGCATTTGACACATGAAAACCCTCTGTGGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTAGCTAAGGACTAAGCATTTGACACATGAAAACCCTCTGTGGGG  747

seq1  GACATTTTAGATTCAAACAGTTACATGTATGAAAGTCACACCTGTGGGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTAGATTCAAACAGTTACATGTATGAAAGTCACACCTGTGGGTG  797

seq1  GATCACAGCTTTGATCACCTTGTCATGCTCTTATCTTACTAACTCCCACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGCTTTGATCACCTTGTCATGCTCTTATCTTACTAACTCCCACT  847

seq1  CATTACTCATCTATTCTCCCATGTATCCCCTGCCGACCACTTTTACCCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTCATCTATTCTCCCATGTATCCCCTGCCGACCACTTTTACCCCA  897

seq1  AATCCAGAGTGGCCTTTCAGAAATATAAACTCCAGTACTGAATTC  941
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGAGTGGCCTTTCAGAAATATAAACTCCAGTACTGAATTC  942


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