BAC Information

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BAC

Clone NameB6Ng01-129J08
Chromosome13 (Build37)
Map Location 12,997,141 - 12,998,079
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999
Downstream geneLOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129J08.bB6Ng01-129J08.g
ACCDH931128DH931129
length1,2471,095
definitionDH931128|Mus musculus domesticus DNA, BAC clone: B6Ng01-129J08, 5' end.DH931129|Mus musculus domesticus DNA, BAC clone: B6Ng01-129J08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacaccaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactctaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaatttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaacagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtgggagaaagacagcattttcaacaattggtgctgg
cacaactggttgttatcgtgtagagatgcgaatcgatccatacttatctc
ctgtactaggtcaatctagtggatcaggatcttcaaataaaccagagaac
tgaaataagaagagaaagtgggaaaagctgaagaatggcacaggggaaaa
tctgaacagaaccgcatgcttggctgtagatcgagaattgacaatggact
tatgagaccaagttctgcaggccaaagatcggtcatagacaaggcccacg
actgggaggatcttactatctaacacggatggggacgtaatatctac
gaattcatttgtgcaactacccttccatatctggaaatcaatatttcttg
agagttctaaacttcctctgactcttacattttgtcaccacctcatccat
gaatactaaatttgagtgtgatatacactttcctttagagtggagcacta
atagccttttattctctgcactctgaccatttctaagcctttgtattaat
catcactactgcaaaaagaaactttaatgatgtgagttgagaatttcact
gatctatgtttataaagataagctattatgggggcagttaaatctctgtc
tacttagtagaaataagcctcatttatggcctttattatatctagctata
ggtttaaagctcagttcacagtactagtgatgcatttcatcttgaggggg
gagcccttatctctaatcatataaaggttggtcagtcccatagcattcat
gcctctataacaacagagttaatatattgccagactagtccttttcatat
tccacacggttcatttttgtataagactattgattattttcctccatcaa
cagaatacaagagcaacttttggctccatgaatgatagctaatacaagtt
tgatttccagtcaatacatgattgaattcttcatggtttatgagtccagc
atgtggtgtcttcagcaattggttttattattattctctgcaggaaaact
gctataccaagagcttctattgctgtgattaagatatgaacaaaagcaac
ttggagaggaaagtgtttacatgcttccatataacaaacaggtaacaact
gaaagcagttagagtgggaacttaaacagagatggaatctcaaggcaagg
gctgatgtagactaagtgtttctagtggtttctttatcttgcttataaca
tccatgaccattagcacagagtatcttctcaaaatggtctggacctttca
acataaatcaaaatagaaaatgtcccacagtttgcacatagctgtattat
aaaaacattctagttgaggtctgtctcctcgatagtctagctgatcactt
gacataaaaaaactagacaagctacccacaacacatagccagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12997141_12998079
seq2: B6Ng01-129J08.g_253_1164

seq1  TAAGCCTTTGTATTAATCATCACTACTGCAAAAAGAAACTTTAATGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTTGTATTAATCATCACTACTGCAAAAAGAAACTTTAATGATGT  50

seq1  GAGTTGAGAATTTCACTGATCTATGTTTATAAAGATAAGCTATTATGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGAATTTCACTGATCTATGTTTATAAAGATAAGCTATTATGGGG  100

seq1  GCAGTTAAATCTCTGTCTACTTAGTAGAAATAAGCCTCATTTATGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAATCTCTGTCTACTTAGTAGAAATAAGCCTCATTTATGGCCTT  150

seq1  TATTATATCTAGCTATAGGTTTAAAGCTCAGTTCACAGTACTAGTGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATCTAGCTATAGGTTTAAAGCTCAGTTCACAGTACTAGTGATGC  200

seq1  ATTTCATCTTGAGGGGGGAGCCCTTATCTCTAATCATATAAAGGTTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCTTGAGGGGGGAGCCCTTATCTCTAATCATATAAAGGTTGGTC  250

seq1  AGTCCCATAGCATTCATGCCTCTATAACAACAGAGTTAATATATTGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATAGCATTCATGCCTCTATAACAACAGAGTTAATATATTGCCAG  300

seq1  ACTAGTCCTTTTCATATTCCACACGGTTCATTTTTGTATAAGACTATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCCTTTTCATATTCCACACGGTTCATTTTTGTATAAGACTATTGA  350

seq1  TTATTTTCCTCCATCAACAGAATACAAGAGCAACTTTTGGCTCCATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCTCCATCAACAGAATACAAGAGCAACTTTTGGCTCCATGAAT  400

seq1  GATAGCTAATACAAGTTTGATTTCCAGTCAATACATGATTGAATTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTAATACAAGTTTGATTTCCAGTCAATACATGATTGAATTCTTCA  450

seq1  TGGTTTATGAGTCCAGCATGTGGTGTCTTCAGCAATTGGTTTTATTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATGAGTCCAGCATGTGGTGTCTTCAGCAATTGGTTTTATTATTA  500

seq1  TTCTCTGCAGGAAAACTGCTATACCAAGAGCTTCTATTGCTGTGATTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCAGGAAAACTGCTATACCAAGAGCTTCTATTGCTGTGATTAAG  550

seq1  ATATGAACAAAAGCAACTTGGAGAGGAAAGTGTTTACATGCTTCCATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACAAAAGCAACTTGGAGAGGAAAGTGTTTACATGCTTCCATATA  600

seq1  ACAAACAGGTAACAACTGAAAGCAGTTAGAGTGGGAACTTAAACAGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGGTAACAACTGAAAGCAGTTAGAGTGGGAACTTAAACAGAGAT  650

seq1  GGAATCTCAAGGCAAGGGCTGATGTAGACTAAGTGTTTTCTAGTGGTTTC  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAATCTCAAGGCAAGGGCTGATGTAGACTAAGTG-TTTCTAGTGGTTTC  699

seq1  TTTATCTTGCTTATAACATCCATGACCATTAGCACAGAGGTATCTCCTCC  750
      |||||||||||||||||||||||||||||||||||||| |||||| ||| 
seq2  TTTATCTTGCTTATAACATCCATGACCATTAGCACAGA-GTATCTTCTC-  747

seq1  AAAAATGGTCTGGACCTTTCAACATAAATCAAAAATTAAGAAAATGTCCC  800
       |||||||||||||||||||||||||||||||||    ||||||||||||
seq2  -AAAATGGTCTGGACCTTTCAACATAAATCAAAA---TAGAAAATGTCCC  793

seq1  ACAGGTTTGCACATAGCCTGGTATTATAAAAACATCTAAGTTTGAGGGTC  850
      ||| |||||||||||||   |||||||||||||||   || |||| ||||
seq2  ACA-GTTTGCACATAGC--TGTATTATAAAAACATTCTAG-TTGA-GGTC  838

seq1  TGTCCTCCTCGATTAGTCTAGCTTGTATCAACTTGACATAAAAAAAAACT  900
      ||| |||||||| ||||||||||   ||| |||||||||  |||||||||
seq2  TGT-CTCCTCGA-TAGTCTAGCT--GATC-ACTTGACAT--AAAAAAACT  881

seq1  AAGACAAAGCTACCCCAACAACAACAAATTAGCCAGCAC  939
       |||| |||||||||     |||||| | ||||||||||
seq2  -AGAC-AAGCTACCC-----ACAACACA-TAGCCAGCAC  912