BAC Information

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BAC

Clone NameB6Ng01-130B04
Chromosome13 (Build37)
Map Location 25,898,036 - 26,064,649
singlet/doubletdoublet
Overlap genenone
Upstream geneBC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130B04.bB6Ng01-130B04.g
ACCDH931481DH931482
length1,095949
definitionDH931481|Mus musculus domesticus DNA, BAC clone: B6Ng01-130B04, 5' end.DH931482|Mus musculus domesticus DNA, BAC clone: B6Ng01-130B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,898,036 - 25,899,134)(26,063,698 - 26,064,649)
sequence
gaattctatgtttactctctagttatttgatgaggacttttaagcagtaa
gaggtcaaaagtgaatacagacaaaggagtttatttttacgtgagaattt
gaagctggaggcctgatgttcagattcaggcctagttttcctactgcaaa
gactcaagtctgcaacagtgtctgtgcctccgccccttcttcacgtggaa
agcagagtgcttagtgtcctctagcccactcgtggctgtgaagactgagg
agaatgctgtctattgatgctgccagagaaggcttctgagcacattgggt
gtgtccaaaatgagtgtctccttttgttgtaatccttttgagacagcatc
tcacggagagcaggctggccttcaattctctttgaagtggaaaccagcct
tgtactcttgatctttctgccttcacctcccaagaacttggattagagac
gtgcaccaggacacgcagcggatgttacagtcatactgttgagacaatgt
ctgtttaaatcatggatggaagggaaaagggcgaaaggtaacttttgctt
caaaacagaaatagactgtaatgcttattactggatcttgcaaatatatc
taactataaatgacatgaaagtttcaaagtaaaacagagttatggccatg
gtaggaaaaggcgtggaatttgaaaaatcagactctaaccagaacacgtc
taagtacctttgcatgcttaagtttcctcaggttcttttgttcaatacct
ttgttcagtttgtttcccaagcaagagatgttggatagactatggaaaag
aacttaaaaccttttggttttagctcatggtttctatgacacataacagc
ataaaggaagtaaagattacttaaaataatcagggagaatgtgtggctta
tctgcagcacatggtccttgaatccagacaggctcagacagatcagttac
aaataaccagttcctcttgctatgactattatgccatgagccgtatggat
taggagacactacatggatgtttcactctagcattaatattttctgctgc
catatctgtcagaaataatgtttatgcaagaatgcattaaatgag
gaattcaagaagtagtcatcccaggaagaataattgtttatctaatctct
agtagtcagctgtgaaatcatacatgcacacacacacacatatatacatg
tatgtatgtatatatatatatatatatatatatatatatatatatatata
tatatacacacacacacacacaacaataattggaactggctaggtgtttt
atatatctatgcacctttacacgtatataacaataacaaagaaaatagga
ccatgaatttaagagcaaacaagggagtaaggtatatgcaagcacttgga
gtaatgaaagagaagaggaaatgatgtaattttacattttaatgtaaaaa
tatattttaaaataaagtataatcttggagcatgaaactgataatttttg
tgataagcttccctagaaacaaaacattgtttgatagtgaatgttgacta
catcaaaacgcctcaggcagagaagtgttagtcctctgcatgaaatggag
acaaccaaataaaaccatctgtcaacagcacggctttgtcacaatgacaa
atttgtgattgaatttactcagcagactatccaaggcttcatgttcatca
aggtatttcatttaaagtatcattaaagtgaaattaagttgctattaaac
cttgtctattcaaatgatgccactgaacgaataaacacacttattctgct
acgcagggagatgacatgatgaattgatatgtgtagcactggggtgggat
gaactctctctatgagtgttacctgtgcataagtatatcgattgtgttgt
acatgacaatggagctggcaaggataaacttcaagaaatcaatcttggaa
cttgccaggacaacagcccctcacttttgcagacataaattcatatattt
atctttctaaggaaagctgggaaagtttggaaggccctacctctgagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25898036_25899134
seq2: B6Ng01-130B04.b_47_1141

seq1  GAATTCTATGTTTACTCTCTAGTTATTTGATGAGGACTTTTAAGCAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTTACTCTCTAGTTATTTGATGAGGACTTTTAAGCAGTAA  50

seq1  GAGGTCAAAAGTGAATACAGACAAAGGAGTTTATTTTTACGTGAGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAAAAGTGAATACAGACAAAGGAGTTTATTTTTACGTGAGAATTT  100

seq1  GAAGCTGGAGGCCTGATGTTCAGATTCAGGCCTAGTTTTCCTACTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGAGGCCTGATGTTCAGATTCAGGCCTAGTTTTCCTACTGCAAA  150

seq1  GACTCAAGTCTGCAACAGTGTCTGTGCCTCCGCCCCTTCTTCACGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGTCTGCAACAGTGTCTGTGCCTCCGCCCCTTCTTCACGTGGAA  200

seq1  AGCAGAGTGCTTAGTGTCCTCTAGCCCACTCGTGGCTGTGAAGACTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTGCTTAGTGTCCTCTAGCCCACTCGTGGCTGTGAAGACTGAGG  250

seq1  AGAATGCTGTCTATTGATGCTGCCAGAGAAGGCTTCTGAGCACATTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTGTCTATTGATGCTGCCAGAGAAGGCTTCTGAGCACATTGGGT  300

seq1  GTGTCCAAAATGAGTGTCTCCTTTTGTTGTAATCCTTTTGAGACAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAAAATGAGTGTCTCCTTTTGTTGTAATCCTTTTGAGACAGCATC  350

seq1  TCACGGAGAGCAGGCTGGCCTTCAATTCTCTTTGAAGTGGAAACCAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGAGAGCAGGCTGGCCTTCAATTCTCTTTGAAGTGGAAACCAGCCT  400

seq1  TGTACTCTTGATCTTTCTGCCTTCACCTCCCAAGAACTTGGATTAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTTGATCTTTCTGCCTTCACCTCCCAAGAACTTGGATTAGAGAC  450

seq1  GTGCACCAGGACACGCAGCGGATGTTACAGTCATACTGTTGAGACAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCAGGACACGCAGCGGATGTTACAGTCATACTGTTGAGACAATGT  500

seq1  CTGTTTAAATCATGGATGGAAGGGAAAAGGGCGAAAGGTAACTTTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAATCATGGATGGAAGGGAAAAGGGCGAAAGGTAACTTTTGCTT  550

seq1  CAAAACAGAAATAGACTGTAATGCTTATTACTGGATCTTGCAAATATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGAAATAGACTGTAATGCTTATTACTGGATCTTGCAAATATATC  600

seq1  TAACTATAAATGACATGAAAGTTTCAAAGTAAAACAGAGTTATGGCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATAAATGACATGAAAGTTTCAAAGTAAAACAGAGTTATGGCCATG  650

seq1  GTAGGAAAAGGCGTGGAATTTGAAAAATCAGACTCTAACCAGAACACGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAAGGCGTGGAATTTGAAAAATCAGACTCTAACCAGAACACGTC  700

seq1  TAAGTACCTTTGCATGCTTAAGTTTCCTCAGGTTCTTTTGTTCAATACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACCTTTGCATGCTTAAGTTTCCTCAGGTTCTTTTGTTCAATACCT  750

seq1  TTGTTCAGTTTGTTTCCCAAGCAAGAGATGTTGGATAGACTATGGAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTTTGTTTCCCAAGCAAGAGATGTTGGATAGACTATGGAAAAG  800

seq1  AACTTAAAACCTTTTGGTTTTAGCTCATGGTTTCTATGACACATAACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAACCTTTTGGTTTTAGCTCATGGTTTCTATGACACATAACAGC  850

seq1  ATAAAGGAAGTAAAGATTACTTAAAATAATCAGGGAGAATGTGTGGCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAAGTAAAGATTACTTAAAATAATCAGGGAGAATGTGTGGCTTA  900

seq1  TCTGCAGCACATGGTCCTTGAATCCAGACAGGCTCAGACAAGATCAGTTA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTGCAGCACATGGTCCTTGAATCCAGACAGGCTCAGAC-AGATCAGTTA  949

seq1  CAAATAACCAGTTCCTCTTGCTATGACTTATTATGCCATGAGCCGTATGG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAATAACCAGTTCCTCTTGCTATGAC-TATTATGCCATGAGCCGTATGG  998

seq1  ATTAGGAGACACTACAATGGATGTTTCACTCTAGCATTAATA-TTTCTGC  1049
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  ATTAGGAGACACTAC-ATGGATGTTTCACTCTAGCATTAATATTTTCTGC  1047

seq1  TGCCATTATCTGTCAGGAAAATTAATG-TTATGCAAG-ATGCATTAATTG  1097
      ||||| ||||||||||   || ||||| ||||||||| ||||||||| ||
seq2  TGCCA-TATCTGTCAG---AAATAATGTTTATGCAAGAATGCATTAAATG  1093

seq1  AG  1099
      ||
seq2  AG  1095

seq1: chr13_26063698_26064649
seq2: B6Ng01-130B04.g_67_1015 (reverse)

seq1  ATCTGCAGAGGTTAGTGCC-TCCAAACTTTCACAGCTTTCCTTAGAAAGA  49
      |||| |||||| ||| ||| ||||||||||| ||||||||||||||||||
seq2  ATCT-CAGAGG-TAGGGCCTTCCAAACTTTCCCAGCTTTCCTTAGAAAGA  48

seq1  TTAAATTTATGATTTAGTGTCTGCAAAAGTGAGGGGCTGTTGTCCTGGCA  99
       ||||| ||||| ||  |||||||||||||||||||||||||||||||||
seq2  -TAAATATATGAATTTATGTCTGCAAAAGTGAGGGGCTGTTGTCCTGGCA  97

seq1  AGTTCCAAGATTGATTTCTTGAAGTCTATCCTTGCCAGCTCCATTTGACA  149
      ||||||||||||||||||||||||| ||||||||||||||||| ||| ||
seq2  AGTTCCAAGATTGATTTCTTGAAGTTTATCCTTGCCAGCTCCA-TTGTCA  146

seq1  TGTACAAACACAATCGATATACTTATGCCACAGGTAATCACTCATTAGAG  199
      ||||| ||||||||||||||||||||| ||||||||| |||||| |||||
seq2  TGTAC-AACACAATCGATATACTTATG-CACAGGTAA-CACTCA-TAGAG  192

seq1  AGACTTCAT-CCACCCCAGTGCTACACATATCAATTCATCATGTCATCTC  248
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCATCCCACCCCAGTGCTACACATATCAATTCATCATGTCATCTC  242

seq1  CCTGCGTAGCAGAAT-AGTGTGTTTACTCGTTCAGTGGCATCATTTGAAT  297
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  CCTGCGTAGCAGAATAAGTGTGTTTATTCGTTCAGTGGCATCATTTGAAT  292

seq1  AGACAAGG-TTAATAGCAACTTAATTTCACTTTAATGATACTTTAAATGA  346
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGTTTAATAGCAACTTAATTTCACTTTAATGATACTTTAAATGA  342

seq1  AATACCTTGATGAACATGAAGCCTTGGATAGTCTGCTGAGTAAATTCAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTGATGAACATGAAGCCTTGGATAGTCTGCTGAGTAAATTCAAT  392

seq1  CACAAA-TTGTCATTGTGACAAAGCCGTGCTGTTGACAGATGGTTTTATT  445
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTTGTCATTGTGACAAAGCCGTGCTGTTGACAGATGGTTTTATT  442

seq1  TGGTTGTCTCCATTTCATGCAGAGGACTAACACTTCTCTGCCTGAGGCGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCTCCATTTCATGCAGAGGACTAACACTTCTCTGCCTGAGGCGT  492

seq1  TTTGATGTAGTCAACATTCACTATCAAACAATGTTTTGTTTCTAGGGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTAGTCAACATTCACTATCAAACAATGTTTTGTTTCTAGGGAAG  542

seq1  CTTATCACAAAAATTATCAGTTTCATGCTCCAAGATTATACTTTATTTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACAAAAATTATCAGTTTCATGCTCCAAGATTATACTTTATTTTA  592

seq1  AAATATATTTTTACATTAAAATGTAAAATTACATCATTTCCTCTTCTCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTTTACATTAAAATGTAAAATTACATCATTTCCTCTTCTCTT  642

seq1  TCATTACTCCAAGTGCTTGCATATACCTTACTCCCTTGTTTGCTCTTAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTCCAAGTGCTTGCATATACCTTACTCCCTTGTTTGCTCTTAAA  692

seq1  TTCATGGTCCTATTTTCTTTGTTATTGTTATATACGTGTAAAGGTGCATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTCCTATTTTCTTTGTTATTGTTATATACGTGTAAAGGTGCATA  742

seq1  GATATATAAAACACCTAGCCAGTTCCAATTACTGTTGTGTGTGTGTGTGT  795
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATATATAAAACACCTAGCCAGTTCCAATTATTGTTGTGTGTGTGTGTGT  792

seq1  GTATATATATATATATATATATATATATATATATATATATATATATATAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATATATATATATATATATATATATATATATATATATATATATAC  842

seq1  ATACATACATGTATATATGTGTGTGTGTGTGCATGTATGATTTCACAGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATGTATATATGTGTGTGTGTGTGCATGTATGATTTCACAGCT  892

seq1  GACTACTAGAGATTAGATAAACAATTATTCTTCCTGGGATGACTACTTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTAGAGATTAGATAAACAATTATTCTTCCTGGGATGACTACTTCT  942

seq1  TGAATTC  952
      |||||||
seq2  TGAATTC  949